lowQualScore : 333333 11 3333333 1
lowQualScore : 1 2 2 2 2 2 4 2 222222 2 2 2 5 3 5 5 00 2 4444444 33 2 0 777777
lowQualScore : . . . . . . . . ...... . . . . . . . .. . ....... .. . . ......
lowQualScore : 9 4 4 4 4 4 7 4 111111 4 4 5 0 5 0 0 99 5 8888888 44 5 4 222222
consensus : ATAGTATACACTT-A-TTCAC-TGG-CT-G-T-GATT----G-TG-GAAT-AGC-TCTTTNA-TTC-AA--C-CCTTGAGGCAG--G-AAC------TATTCCC
Reference ( gi|91216 ) : ATAGTATACACTT-A-TTCAC-TGG-CT-G-T-GA------G-TG-GAAT-AGC-TCTTTTA-TTC-AA--C-C---GAGGCAG--G-AGC------TATTCCC
gi|91215 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-T-GA------G-TG-GAAT-GGC-TCTCTTA-TTC-AAC-C-C---GAGGCAG--G-AAC------TATTCCC
gi|91217 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-T-GA------T-TG-TAAT-AGC-TCTTTTA-TTC-AAC-C-C---GAGACAG--G-ACC------TATTCCC
gi|91218 : ATATTATACTGTT-A-TTCAC-TGG-CT-G-T-GA------G-TG-GAAT-AGC-TCTTTTA-TTC-AAC-C-C---GAGGCAG--G-AAC------TATTCCC
gi|91221 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-T-GAGTGTGCG-TG-GAAT-AGC-TTCTTTATTTC-AA--C-C---GAGGCAG--G-AAC------TATTCCC
gi|91220 : ATATTATACACTT-A-TTCAC-TGG-CT-G-T-GA------G-TG-GAAT-AGC-TCTTTTA--TC-AA--C-C---GA-GCAT--G-AAC------TATTCCC
gi|91219 : ATATTATACACTT-A-TCCAC-TGG-CT-G-T-GA------G-TG-GAAT-AGT-TCTTTTA-TTC-AA--CAC---GAGACAG--G-ACA------TATTCCC
gi|91223 : ATAGAATACACTTTA-TTCAC-TGG-CT-G-TTGA------GGTG-GAAT-AGT-TCTTTTA-TT--AACCC-C---AAGGCAG--T-AAC------TATT
gi|91222 : ATAATA-ACACTT-A-TTCAC-TGGAAT-G-T-GATTG---G-TG-GACT-AGCTTCTTTGA-TTCGAA--C-CCTTGA--CAG--G-AAC-------ATTCCC
gi|91224 : ATAATATACACTT-A-TTCAC-TGG-CT-A-T-GA------G-TG-GA
gi|91225 : TATACACTT-A-TTCAC-TGG-CT-G-T-GA------G-TG-GAAT-AGCTTCTTTTA--TC-AA--C-C---GAGGCAGATG-A-C------AATTCCC
gi|91227 : ACACTT-A-TTCAC-TGG-CT-G-T-GATT----G-TG-GAAT-AGC-TCTTTAA-TCC-AA--C-CCTTGA--CAG--G-AAT------TATTCCC
gi|91232 : ACACTT-A-TTCAC-TGG-CT-GTT-GATT----G-TG-GAATAAGC-TCATTGA-TTC-AA--C-CCTTGA--CAG--G-AGC------TATTCCC
gi|91228 : ACACTT-A-TTCAC-TGA-CT-G-T-GATT----G-TG-GAAT-ATC-TCTTTAA-TCC-AA--C-CCTTGA--CAG--G-TAC------TATTCCC
gi|91230 : ACACTT-ACTTCACGTGG-CT-GGT-GA------T-TGTGAAT-AGC-TCTTTGA-TTC-AA--C-CCTTGA--CAG--G-AAC------TATTCCC
gi|91226 : ACACCT-A-TTCAC-TGG-CT-G-T-GATT----G-CG-GAAT-AGC-TCTTTAA-TCC-AA--C-CCTTGA--CAG--G-A-CTTGAAATATTCCC
gi|91229 : ACACTT-A-TTCAT-TGG-GT-G-T-GATT----G-TC-GAAT-AGC-TCTTTAA-TTCAAA--C-T---TTGACAA--G-AAC------TATTTCC
gi|91231 : ACACTT-A-T-CAC-TGG-CTTG-T-GATATT--G-TA-GAAT-AGC-TCTTTGATTTC-AA--C-CCTTGA--CAG--GAAAC------TATACCC
Alignments
lowQualScore : 22222222 111 22
lowQualScore : 0 2 2 2 2 2 6 55555555 2 7 1 2 2 666 00 55555 4
lowQualScore : . . . . . . . ........ . . . . . ... .. ..... .
lowQualScore : 7 2 2 2 2 2 7 88888888 4 1 0 4 4 999 11 99999 7
consensus : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
Reference ( family-908 ) : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
gi|91215 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-GGC-TCTCTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91216 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACC---GAGGCAG-----G-AGCTATTCCC
gi|91217 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GT--AAT-AGC-TCTTTTA-TTC-AACCC--GAGACAG-----G-ACCTATTCCC
gi|91218 : ATATTATACTGTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91219 : ATATTATACACTT-A-TCCAC-TGG-CT-G-TGA--------GTGGAAT-AGT-TCTTTTA-TTC-AACAC--GAGACAG-----G-ACATATTCCC
gi|91220 : ATATTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA--TC-AACC---GA-GCAT-----G-AACTATTCCC
gi|91221 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAG--TGTGCGTGGAAT-AGCTTCTTTAT-TTC-AACC---GAGGCAG-----G-AACTATTCCC
gi|91222 : ATAATA-ACACTT-A-TTCAC-TGGAAT-G-TGAT--TG---GTGGACT-AGCTTCTTTGA-TTCGAACCCTTGA--CAG-----G-AAC-ATTCCC
gi|91223 : ATAGAATACACTTTA-TTCAC-TGG-CT-GTTGA---G----GTGGAAT-AGT-TCTTTTA-TT--AACCC-CAAGGCAG-----T-AACTATT
gi|91224 : ATAATATACACTT-A-TTCAC-TGG-CT-A-TGA--------GTGGA
gi|91225 : TATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGCTTCTTTTA--TC-AACC---GAGGCAG-----ATGACAATTCCC
gi|91226 : ACACCT-A-TTCAC-TGG-CT-G-TGAT--T----GCGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAGGACTTG-AAATATTCCC
gi|91227 : ACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-AATTATTCCC
gi|91228 : ACACTT-A-TTCAC-TGA-CT-G-TGAT--T----GTGGAAT-ATC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-TACTATTCCC
gi|91229 : ACACTT-A-TTCAT-TGG-GT-G-TGAT--T----GTCGAAT-AGC-TCTTTAA-TTC-AAACTTTGA--CAA-----G-AACTATTTCC
gi|91230 : ACACTT-ACTTCACGTGG-CT-GGTGAT--T----GTG-AAT-AGC-TCTTTGA-TTC-AACCCTTGA--CAG-----G-AACTATTCCC
gi|91231 : ACACTT-A-T-CAC-TGG-CTTG-TGATATT----GTAGAAT-AGC-TCTTTGATTTC-AACCCTTGA--CAG-----GAAACTATACCC
gi|91232 : ACACTT-A-TTCAC-TGG-CT-GTTGAT--T----GTGGAATAAGC-TCATTGA-TTC-AACCCTTGA--CAG-----G-AGCTATTCCC
Alignments
lowQualScore : 22222222 111 22
lowQualScore : 0 2 2 2 2 2 6 55555555 2 7 1 2 2 666 00 55555 4
lowQualScore : . . . . . . . ........ . . . . . ... .. ..... .
lowQualScore : 7 2 2 2 2 2 7 88888888 4 1 0 4 4 999 11 99999 7
consensus : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
Reference ( family-908 ) : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
gi|91215 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-GGC-TCTCTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91216 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACC---GAGGCAG-----G-AGCTATTCCC
gi|91217 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GT--AAT-AGC-TCTTTTA-TTC-AACCC--GAGACAG-----G-ACCTATTCCC
gi|91218 : ATATTATACTGTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91219 : ATATTATACACTT-A-TCCAC-TGG-CT-G-TGA--------GTGGAAT-AGT-TCTTTTA-TTC-AACAC--GAGACAG-----G-ACATATTCCC
gi|91220 : ATATTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA--TC-AACC---GA-GCAT-----G-AACTATTCCC
gi|91221 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAG--TGTGCGTGGAAT-AGCTTCTTTAT-TTC-AACC---GAGGCAG-----G-AACTATTCCC
gi|91222 : ATAATA-ACACTT-A-TTCAC-TGGAAT-G-TGAT--TG---GTGGACT-AGCTTCTTTGA-TTCGAACCCTTGA--CAG-----G-AAC-ATTCCC
gi|91223 : ATAGAATACACTTTA-TTCAC-TGG-CT-GTTGA---G----GTGGAAT-AGT-TCTTTTA-TT--AACCC-CAAGGCAG-----T-AACTATT
gi|91224 : ATAATATACACTT-A-TTCAC-TGG-CT-A-TGA--------GTGGA
gi|91225 : TATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGCTTCTTTTA--TC-AACC---GAGGCAG-----ATGACAATTCCC
gi|91226 : ACACCT-A-TTCAC-TGG-CT-G-TGAT--T----GCGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAGGACTTG-AAATATTCCC
gi|91227 : ACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-AATTATTCCC
gi|91228 : ACACTT-A-TTCAC-TGA-CT-G-TGAT--T----GTGGAAT-ATC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-TACTATTCCC
gi|91229 : ACACTT-A-TTCAT-TGG-GT-G-TGAT--T----GTCGAAT-AGC-TCTTTAA-TTC-AAACTTTGA--CAA-----G-AACTATTTCC
gi|91230 : ACACTT-ACTTCACGTGG-CT-GGTGAT--T----GTG-AAT-AGC-TCTTTGA-TTC-AACCCTTGA--CAG-----G-AACTATTCCC
gi|91231 : ACACTT-A-T-CAC-TGG-CTTG-TGATATT----GTAGAAT-AGC-TCTTTGATTTC-AACCCTTGA--CAG-----GAAACTATACCC
gi|91232 : ACACTT-A-TTCAC-TGG-CT-GTTGAT--T----GTGGAATAAGC-TCATTGA-TTC-AACCCTTGA--CAG-----G-AGCTATTCCC
blockSeqs : T C G A T T GTGTGC A T T T G CTT GG GACTT T
blockSeqs : . . . . . G TATT . T T . . CTT GA . A
blockSeqs : . . . . . T TTG . T T . . CTT GG . .
blockSeqs : . . . . . . TT . . T . . CTT GA . .
blockSeqs : . . . . . . TT . . T . . TTT GG . .
blockSeqs : . . . . . . TT . . A . . CTT GG . .
blockSeqs : . . . . . . TT . . G . . CTT GG . .
blockSeqs : . . . . . . TT . . T . . CTT G . .
blockSeqs : . . . . . . TT . . T . . CC . . .
blockSeqs : . . . . . . TT . . A . . C . . .
blockSeqs : . . . . . . G . . A . . C . . .
blockSeqs : . . . . . . . . . A . . C . . .
blockSeqs : . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TT****** CTT GG
originalCons : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
finalCons : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGATT------GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
Alignments
lowQualScore : 22222222 111 22
lowQualScore : 0 2 2 2 2 2 6 55555555 2 7 1 2 2 666 00 55555 4
lowQualScore : . . . . . . . ........ . . . . . ... .. ..... .
lowQualScore : 7 2 2 2 2 2 7 88888888 4 1 0 4 4 999 11 99999 7
consensus : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
Reference ( family-908 ) : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTNA-TTC-AACCCTTGAGGCAG-----G-AACTATTCCC
gi|91215 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-GGC-TCTCTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91216 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACC---GAGGCAG-----G-AGCTATTCCC
gi|91217 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GT--AAT-AGC-TCTTTTA-TTC-AACCC--GAGACAG-----G-ACCTATTCCC
gi|91218 : ATATTATACTGTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA-TTC-AACCC--GAGGCAG-----G-AACTATTCCC
gi|91219 : ATATTATACACTT-A-TCCAC-TGG-CT-G-TGA--------GTGGAAT-AGT-TCTTTTA-TTC-AACAC--GAGACAG-----G-ACATATTCCC
gi|91220 : ATATTATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGC-TCTTTTA--TC-AACC---GA-GCAT-----G-AACTATTCCC
gi|91221 : ATAGTATACACTT-A-TTCAC-TGG-CT-G-TGAG--TGTGCGTGGAAT-AGCTTCTTTAT-TTC-AACC---GAGGCAG-----G-AACTATTCCC
gi|91222 : ATAATA-ACACTT-A-TTCAC-TGGAAT-G-TGAT--TG---GTGGACT-AGCTTCTTTGA-TTCGAACCCTTGA--CAG-----G-AAC-ATTCCC
gi|91223 : ATAGAATACACTTTA-TTCAC-TGG-CT-GTTGA---G----GTGGAAT-AGT-TCTTTTA-TT--AACCC-CAAGGCAG-----T-AACTATT
gi|91224 : ATAATATACACTT-A-TTCAC-TGG-CT-A-TGA--------GTGGA
gi|91225 : TATACACTT-A-TTCAC-TGG-CT-G-TGA--------GTGGAAT-AGCTTCTTTTA--TC-AACC---GAGGCAG-----ATGACAATTCCC
gi|91226 : ACACCT-A-TTCAC-TGG-CT-G-TGAT--T----GCGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAGGACTTG-AAATATTCCC
gi|91227 : ACACTT-A-TTCAC-TGG-CT-G-TGAT--T----GTGGAAT-AGC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-AATTATTCCC
gi|91228 : ACACTT-A-TTCAC-TGA-CT-G-TGAT--T----GTGGAAT-ATC-TCTTTAA-TCC-AACCCTTGA--CAG-----G-TACTATTCCC
gi|91229 : ACACTT-A-TTCAT-TGG-GT-G-TGAT--T----GTCGAAT-AGC-TCTTTAA-TTC-AAACTTTGA--CAA-----G-AACTATTTCC
gi|91230 : ACACTT-ACTTCACGTGG-CT-GGTGAT--T----GTG-AAT-AGC-TCTTTGA-TTC-AACCCTTGA--CAG-----G-AACTATTCCC
gi|91231 : ACACTT-A-T-CAC-TGG-CTTG-TGATATT----GTAGAAT-AGC-TCTTTGATTTC-AACCCTTGA--CAG-----GAAACTATACCC
gi|91232 : ACACTT-A-TTCAC-TGG-CT-GTTGAT--T----GTGGAATAAGC-TCATTGA-TTC-AACCCTTGA--CAG-----G-AGCTATTCCC