lowQualScore : 11111
lowQualScore : 2 5555 777777 5 2 2 33 2 7 33 22222 33 444 2 33 2 2 33 2 2
lowQualScore : . .... ...... . . . .. . . .. ..... .. ... . .. . . .. . .
lowQualScore : 5 3333 222222 0 9 4 22 4 6 22 88888 22 111 4 22 4 4 99 5 5
consensus : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA----NTG--AC---TG-TA--TTAT-TC-T-GAA-GGATA-ATAAT
Reference ( gi|8081 ) : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGATCAGCCC--TAGACCAATGAAA----ATG--AC---TG-TA--TTAT-TC-T-AAA-GGATA-ATAAT
gi|8082 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTTAC-GTGACCAGCCC--TAGACCAATGAAA----ATG--AT---TG-TA--TTAT-TC-T-AAA-GGATA-ATAAT
gi|8083 : AGGGAG-ATCGACAT------CA-CTAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TATACCAATGAAA----TTG--AC---TG-TA--TTAT-TC-T-GAA-GGATA-ATAAT
gi|8084 : AGGGAT-A----CAT------CA-GGAATTA-TCTC--CCTTCAT-GTGACCATCCC--TAGACCAATGAAA----TTG--AT---TG-TA--TTAT-TC-T-GAA-GGATA-ATAA
gi|8085 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCAGCAC-GTGACCAGCCC--TAGACCAATGAAATTACATGTAAC---TG-TA--TTAT-TC-G-GAG-GGATT-ACAAT
gi|8086 : AGGGAG-A----CATATACATCA-CAAATTA-TTTC--CCTTCAC-GTGACCAGCCC--AAGACCAATG-AA----TTG--AC---TG-TA--TTAT-TG-TGAAA-GGATA-ATAA
gi|8088 : AGGGAA-C----CGT------AA-CAAATTA-TCTC--CCT-CAC-GTGACCAGCCC--TGAACCAATGAAA----ATG--AC---GG-TT--TTAT-TC-T-AAA-AGATA-ACAAT
gi|8090 : AGGGAG-A----C--------CA-TGAATTA-TCTC--CCTTCAT-GTGATCAGCCT--TTGGCCAATGAAA----ATG--AC---TG-CA--TCAT-TC-T-GA
gi|8089 : AGGGAG-A----CAT------CAACGAATTAATCTC--CCTTCACTGTGACCAGCGC--TGGACCAATG--A----GTG--AC---TGAAA--TTAT-TC-T-ACA--GATA-ATAAT
gi|8087 : AGGGAG-A----CAA------CA-T-AGTTG-TCAC--CCTACAC-GTGACCAGACC--TAGACCAATGCAA----TTG--AC---AG-TA--TTAT-TT-T-GAA-GGATA-ATAAT
gi|8091 : AGGGAG-A----CAT----------GAATTA-TCTT--CCTT----------A------TAGACCAATGAAA----TTG--AC---TG-TA--TCAT-TC-T-GAA-GGATA-ATTAT
gi|8092 : GGGAG-A----CAT------CA-GGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA----GGG--AC---TG-TA--TTAT-TC-T-GAA-GGATA-ATAAT
gi|8094 : GGGAGGA----CAT------CA-C-AATTA-TC-C--CCTTCAC-GTAACCAGCCCCTTAGGCCAATGAAA----ATG--ACCTTTG-TATCTTAT-TCTT-AAA-GGATATATAAT
gi|8093 : GGGAG-A----CGT------CA-C-AATTG-TCTC--TCTTCAC-GTGACCAGCCC--TCAACCAATGCAA----TTG--GT---TA-TA--TTAT-TC-T-GAA-GCATA-ATTAT
gi|8095 : GGTAG-A----CAT------TA-CGATTTG-TCTC--TCTTAAC-GTGA-------------CCAATGAAA-----TG--A-----G-TA--TTTT-TC-T-GAG-GGATA-ATAA
gi|8096 : GGAG-A----CAT------CA-CGAATTA-CTTC--CCTTCAC-GTGACCAGCCC--GAGACCAATGATA----TTG--AC---TG-TA--TTAT-TC-T-GAA-GGATA-ATAAT
gi|8097 : AG-A----CAT------CAACGAATTG-TATC--CCTTCAC-GTGACC-GCCC--TGACCCAAT-ACA----ATG--AC---TG-GA--TTTTCTC-T-GAACGGATA-ACAA
gi|8098 : AATCA-TGTCAGCTTTAAC-GTGACCAGCCC--TAGAACTATGAAA----CTG--AT------TA--TTTT-TC-T-GAA-GGATA-AT
Alignments
lowQualScore : 2 5555 666666 4 2 2 33 2 33 9999999 333 2 33 2 2 2 2 2
lowQualScore : . .... ...... . . . .. . .. ....... ... . .. . . . . .
lowQualScore : 4 0000 888888 7 2 2 11 2 11 6666666 999 2 11 2 2 2 4 4
consensus : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
Reference ( family-907 ) : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8081 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGATCAGCCC--TAGACCAATGAAA------ATGAC---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8082 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTTAC-GTGACCAGCCC--TAGACCAATGAAA------ATGAT---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8083 : AGGGAG-ATCGACAT------CA-CTAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TATACCAATGAAA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8084 : AGGGAT-A----CAT------CA-GGAATTA-TCTC--CCTTCAT-GTGACCATCCC--TAGACCAATGAAA------TTGAT---TG-TA--TTAT-TC-TG-AA-GGATA-ATAA
gi|8085 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCAGCAC-GTGACCAGCCC--TAGACCAATGAAATTACATGTAAC---TG-TA--TTAT-TC-GG-AG-GGATT-ACAAT
gi|8086 : AGGGAG-A----CATATACATCA-CAAATTA-TTTC--CCTTCAC-GTGACCAGCCC--AAGACCAATG-AA------TTGAC---TG-TA--TTAT-TG-TGAAA-GGATA-ATAA
gi|8087 : AGGGAG-A----CAA------CA-T-AGTTG-TCAC--CCTACAC-GTGACCAGACC--TAGACCAATGCAA------TTGAC---AG-TA--TTAT-TT-TG-AA-GGATA-ATAAT
gi|8088 : AGGGAA-C----CGT------AA-CAAATTA-TCTC--CCT-CAC-GTGACCAGCCC--TGAACCAATGAAA------ATGAC---GG-TT--TTAT-TC-TA-AA-AGATA-ACAAT
gi|8089 : AGGGAG-A----CAT------CAACGAATTAATCTC--CCTTCACTGTGACCAGCGC--TGGACCAATG--A------GTGAC---TGAAA--TTAT-TC-T--AC-AGATA-ATAAT
gi|8090 : AGGGAG-A----C--------CA-TGAATTA-TCTC--CCTTCAT-GTGATCAGCCT--TTGGCCAATGAAA------ATGAC---TG-CA--TCAT-TC-TG-A
gi|8091 : AGGGAG-A----CAT----------GAATTA-TCTT--CCTT----------A------TAGACCAATGAAA------TTGAC---TG-TA--TCAT-TC-TG-AA-GGATA-ATTAT
gi|8092 : GGGAG-A----CAT------CA-GGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------GGGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8093 : GGGAG-A----CGT------CA-C-AATTG-TCTC--TCTTCAC-GTGACCAGCCC--TCAACCAATGCAA------TTGGT---TA-TA--TTAT-TC-TG-AA-GCATA-ATTAT
gi|8094 : GGGAGGA----CAT------CA-C-AATTA-TC-C--CCTTCAC-GTAACCAGCCCCTTAGGCCAATGAAA------ATGACCTTTG-TATCTTAT-TCTTA-AA-GGATATATAAT
gi|8095 : GGTAG-A----CAT------TA-CGATTTG-TCTC--TCTTAAC-GTGA-------------CCAATGAAA-------TGA-----G-TA--TTTT-TC-TG-AG-GGATA-ATAA
gi|8096 : GGAG-A----CAT------CA-CGAATTA-CTTC--CCTTCAC-GTGACCAGCCC--GAGACCAATGATA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8097 : AG-A----CAT------CAACGAATTG-TATC--CCTTCAC-GTGACC-GCCC--TGACCCAAT-ACA------ATGAC---TG-GA--TTTTCTC-TG-AACGGATA-ACAA
gi|8098 : AATCA-TGTCAGCTTTAAC-GTGACCAGCCC--TAGAACTATGAAA------CTGAT------TA--TTTT-TC-TG-AA-GGATA-AT
Alignments
lowQualScore : 2 5555 666666 4 2 2 33 2 33 9999999 333 2 33 2 2 2 2 2
lowQualScore : . .... ...... . . . .. . .. ....... ... . .. . . . . .
lowQualScore : 4 0000 888888 7 2 2 11 2 11 6666666 999 2 11 2 2 2 4 4
consensus : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
Reference ( family-907 ) : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8081 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGATCAGCCC--TAGACCAATGAAA------ATGAC---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8082 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTTAC-GTGACCAGCCC--TAGACCAATGAAA------ATGAT---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8083 : AGGGAG-ATCGACAT------CA-CTAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TATACCAATGAAA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8084 : AGGGAT-A----CAT------CA-GGAATTA-TCTC--CCTTCAT-GTGACCATCCC--TAGACCAATGAAA------TTGAT---TG-TA--TTAT-TC-TG-AA-GGATA-ATAA
gi|8085 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCAGCAC-GTGACCAGCCC--TAGACCAATGAAATTACATGTAAC---TG-TA--TTAT-TC-GG-AG-GGATT-ACAAT
gi|8086 : AGGGAG-A----CATATACATCA-CAAATTA-TTTC--CCTTCAC-GTGACCAGCCC--AAGACCAATG-AA------TTGAC---TG-TA--TTAT-TG-TGAAA-GGATA-ATAA
gi|8087 : AGGGAG-A----CAA------CA-T-AGTTG-TCAC--CCTACAC-GTGACCAGACC--TAGACCAATGCAA------TTGAC---AG-TA--TTAT-TT-TG-AA-GGATA-ATAAT
gi|8088 : AGGGAA-C----CGT------AA-CAAATTA-TCTC--CCT-CAC-GTGACCAGCCC--TGAACCAATGAAA------ATGAC---GG-TT--TTAT-TC-TA-AA-AGATA-ACAAT
gi|8089 : AGGGAG-A----CAT------CAACGAATTAATCTC--CCTTCACTGTGACCAGCGC--TGGACCAATG--A------GTGAC---TGAAA--TTAT-TC-T--AC-AGATA-ATAAT
gi|8090 : AGGGAG-A----C--------CA-TGAATTA-TCTC--CCTTCAT-GTGATCAGCCT--TTGGCCAATGAAA------ATGAC---TG-CA--TCAT-TC-TG-A
gi|8091 : AGGGAG-A----CAT----------GAATTA-TCTT--CCTT----------A------TAGACCAATGAAA------TTGAC---TG-TA--TCAT-TC-TG-AA-GGATA-ATTAT
gi|8092 : GGGAG-A----CAT------CA-GGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------GGGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8093 : GGGAG-A----CGT------CA-C-AATTG-TCTC--TCTTCAC-GTGACCAGCCC--TCAACCAATGCAA------TTGGT---TA-TA--TTAT-TC-TG-AA-GCATA-ATTAT
gi|8094 : GGGAGGA----CAT------CA-C-AATTA-TC-C--CCTTCAC-GTAACCAGCCCCTTAGGCCAATGAAA------ATGACCTTTG-TATCTTAT-TCTTA-AA-GGATATATAAT
gi|8095 : GGTAG-A----CAT------TA-CGATTTG-TCTC--TCTTAAC-GTGA-------------CCAATGAAA-------TGA-----G-TA--TTTT-TC-TG-AG-GGATA-ATAA
gi|8096 : GGAG-A----CAT------CA-CGAATTA-CTTC--CCTTCAC-GTGACCAGCCC--GAGACCAATGATA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8097 : AG-A----CAT------CAACGAATTG-TATC--CCTTCAC-GTGACC-GCCC--TGACCCAAT-ACA------ATGAC---TG-GA--TTTTCTC-TG-AACGGATA-ACAA
gi|8098 : AATCA-TGTCAGCTTTAAC-GTGACCAGCCC--TAGAACTATGAAA------CTGAT------TA--TTTT-TC-TG-AA-GGATA-AT
blockSeqs : G TCGA ATACAT A G A AG T CT TTACATG CTT A TC C T A C T
blockSeqs : . . . A T . . . . A . . . . . . . .
blockSeqs : . . . . G . . . . T . . . . . . . .
blockSeqs : . . . . G . . . . T . . . . . . . .
blockSeqs : . . . . A . . . . T . . . . . . . .
blockSeqs : . . . . A . . . . T . . . . . . . .
blockSeqs : . . . . G . . . . A . . . . . . . .
blockSeqs : . . . . G . . . . G . . . . . . . .
blockSeqs : . . . . G . . . . A . . . . . . . .
blockSeqs : . . . . G . . . . T . . . . . . . .
blockSeqs : . . . . G . . . . G . . . . . . . .
blockSeqs : . . . . G . . . . T . . . . . . . .
blockSeqs : . . . . G . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons :
originalCons : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
finalCons : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
Alignments
lowQualScore : 2 5555 666666 4 2 2 33 2 33 9999999 333 2 33 2 2 2 2 2
lowQualScore : . .... ...... . . . .. . .. ....... ... . .. . . . . .
lowQualScore : 4 0000 888888 7 2 2 11 2 11 6666666 999 2 11 2 2 2 4 4
consensus : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
Reference ( family-907 ) : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------NTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8081 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTCAC-GTGATCAGCCC--TAGACCAATGAAA------ATGAC---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8082 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCTTTAC-GTGACCAGCCC--TAGACCAATGAAA------ATGAT---TG-TA--TTAT-TC-TA-AA-GGATA-ATAAT
gi|8083 : AGGGAG-ATCGACAT------CA-CTAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TATACCAATGAAA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8084 : AGGGAT-A----CAT------CA-GGAATTA-TCTC--CCTTCAT-GTGACCATCCC--TAGACCAATGAAA------TTGAT---TG-TA--TTAT-TC-TG-AA-GGATA-ATAA
gi|8085 : AGGGAG-A----CAT------CA-CGAATTA-TCTC--CCAGCAC-GTGACCAGCCC--TAGACCAATGAAATTACATGTAAC---TG-TA--TTAT-TC-GG-AG-GGATT-ACAAT
gi|8086 : AGGGAG-A----CATATACATCA-CAAATTA-TTTC--CCTTCAC-GTGACCAGCCC--AAGACCAATG-AA------TTGAC---TG-TA--TTAT-TG-TGAAA-GGATA-ATAA
gi|8087 : AGGGAG-A----CAA------CA-T-AGTTG-TCAC--CCTACAC-GTGACCAGACC--TAGACCAATGCAA------TTGAC---AG-TA--TTAT-TT-TG-AA-GGATA-ATAAT
gi|8088 : AGGGAA-C----CGT------AA-CAAATTA-TCTC--CCT-CAC-GTGACCAGCCC--TGAACCAATGAAA------ATGAC---GG-TT--TTAT-TC-TA-AA-AGATA-ACAAT
gi|8089 : AGGGAG-A----CAT------CAACGAATTAATCTC--CCTTCACTGTGACCAGCGC--TGGACCAATG--A------GTGAC---TGAAA--TTAT-TC-T--AC-AGATA-ATAAT
gi|8090 : AGGGAG-A----C--------CA-TGAATTA-TCTC--CCTTCAT-GTGATCAGCCT--TTGGCCAATGAAA------ATGAC---TG-CA--TCAT-TC-TG-A
gi|8091 : AGGGAG-A----CAT----------GAATTA-TCTT--CCTT----------A------TAGACCAATGAAA------TTGAC---TG-TA--TCAT-TC-TG-AA-GGATA-ATTAT
gi|8092 : GGGAG-A----CAT------CA-GGAATTA-TCTC--CCTTCAC-GTGACCAGCCC--TAGACCAATGAAA------GGGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8093 : GGGAG-A----CGT------CA-C-AATTG-TCTC--TCTTCAC-GTGACCAGCCC--TCAACCAATGCAA------TTGGT---TA-TA--TTAT-TC-TG-AA-GCATA-ATTAT
gi|8094 : GGGAGGA----CAT------CA-C-AATTA-TC-C--CCTTCAC-GTAACCAGCCCCTTAGGCCAATGAAA------ATGACCTTTG-TATCTTAT-TCTTA-AA-GGATATATAAT
gi|8095 : GGTAG-A----CAT------TA-CGATTTG-TCTC--TCTTAAC-GTGA-------------CCAATGAAA-------TGA-----G-TA--TTTT-TC-TG-AG-GGATA-ATAA
gi|8096 : GGAG-A----CAT------CA-CGAATTA-CTTC--CCTTCAC-GTGACCAGCCC--GAGACCAATGATA------TTGAC---TG-TA--TTAT-TC-TG-AA-GGATA-ATAAT
gi|8097 : AG-A----CAT------CAACGAATTG-TATC--CCTTCAC-GTGACC-GCCC--TGACCCAAT-ACA------ATGAC---TG-GA--TTTTCTC-TG-AACGGATA-ACAA
gi|8098 : AATCA-TGTCAGCTTTAAC-GTGACCAGCCC--TAGAACTATGAAA------CTGAT------TA--TTTT-TC-TG-AA-GGATA-AT