lowQualScore : 1 222222
lowQualScore : 2 2 2 2 4 88 2 2 33 2 4 2 2 5 444 7 111111
lowQualScore : . . . . . .. . . .. . . . . . ... . ......
lowQualScore : 5 5 5 4 7 88 4 4 22 4 7 4 4 0 444 5 666666
consensus : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AATGACAG-A---AATATA---G--TGAAA
Reference ( gi|72772 ) : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AATGACAG-A---AA-ATA---T--TGAAA
gi|72771 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GT--G-T-C--ATTTT-ATTGA-TTGAAA-AATGACAG-A---AATATA---G--TGAAA
gi|72776 : TATA-T-CCATT-CAA-AAACCTTCA-AAATTT-GC--A-T-C--ATTTT-ATTGA-TTG-AA-AATGACAGAA---AA-ATA---G--TGAAA
gi|72774 : TATA-TTCCAAT-CAA-AAACCTTCA-AAATTT-TC--G-T-C--ATTTT-ATTGA-TTG-AA-AATGACAG-A---AACATA---G--TGAAA
gi|72773 : TATAATTCCATT-CAA-AAACCTTCG-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AATTACAG-A---AATATA---G--TGAAA
gi|72775 : TATA-TTCTATT-CAA-AAACCTTCA-AAATTTTGC--GGT-C--ATTTT-ATTGA-TTG-AA-AATGACAG-A---AATATA---G--TGAA
gi|72780 : TATA-TTCCATT-CGA-AAACCT-CA-AAATTT-GC--G-T-C--A-TTT-ATTGA--TG-AA-AATGACAG-A---AA-
gi|72781 : TATA-TTCCATT-CAA-AAACCTTCA-AAA--T-GCCTG-T-C--ATTTT-ATTGA-TTT-GA-AATGACAG-A---AA-t
gi|72779 : TATA-TTCCATT-CAA-AAA-CTTCA-AAATTT-GCT-G-TCC--ATTTT-ATTGATTTG-AA-AATGACAG-AAATAA-ATATAGT--TGAAA
gi|72778 : TATA-TT--ATT-CAA-AAACCTTCAGAAATTT-GC--G-T-C--A-TTT-ATTGA-TTG--A-AATGACAG-----AA-ATA---TG-TGAAA
gi|72777 : TATG-ATCCATTTCAAAAAACCTTC--AAATTT-GC--A-T-CATATTTT-ATTGA-TTG-AATAATGACAG-A---AA-ATT---G--TGAAA
gi|72782 : TATA-TTCCATT-CAA-AAA--------------AC--G-T-C--ATTTT-ATTGA-TTG-AA-AATGACAG-A---AATATA---G--TGAAA
gi|72783 : ATA-T-CCATT-CAA-AAACCTTCA-AAATTT-AC--G-T-C--ATTTT-ATTGA-TTG-AA-AATGATAG-A---AATATA---G--TGAAA
gi|72784 : ATA-TTCCATC-CAA-AAAC-TTCA-AAATTTTGC--G-T-C--ATTTT-AATGG-ATG-AA-AATGACGA-A---AT-ATA---G--TGAAA
gi|72785 : ATA-TTC-ATT-AAA-AATCCT--A-AAATTT-GC--G-T-C--ATTTG-ATTGA-TTG----AATGACAGCA---AA-ATA---TAATGAA
gi|72786 : TA-TTCTATT-CAA-A--CCTTCA-AAA-TT-GC--G-T-C--ATTTTAATTGA-TTG-AA-AATGACAG-A---AATATA---G--TGAAA
gi|72787 : TA-TTCCATT-CAA-AAACCTTC---AATTT-GCGAG-T-C--ATTTT-TTGGACTTG-AA-AA
gi|72788 : TCA-AAATTT-GC--G-T-C--AGTTT-ATTAA-TTG-AA-AATGAC----------ATA---G--TGAAAgtttacggtaataca
Alignments
lowQualScore : 2 2 2 2 4 88 2 2 33 2 4 2 2 33 7777 0 2
lowQualScore : . . . . . .. . . .. . . . . .. .... . .
lowQualScore : 4 4 4 2 4 33 2 2 11 2 4 2 2 11 8888 6 7
consensus : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
Reference ( family-904 ) : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72771 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GT--G-T-C--ATTTT-ATTGA-TTGAAA-AA--TGACAG----AAATATAG-TGAAA
gi|72772 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAA-ATAT-TGAAA
gi|72773 : TATAATTCCATT-CAA-AAACCTTCG-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TTACAG----AAATATAG-TGAAA
gi|72774 : TATA-TTCCAAT-CAA-AAACCTTCA-AAATTT-TC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAACATAG-TGAAA
gi|72775 : TATA-TTCTATT-CAA-AAACCTTCA-AAATTTTGC--GGT-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAA
gi|72776 : TATA-T-CCATT-CAA-AAACCTTCA-AAATTT-GC--A-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAAAATAG-TGAAA
gi|72777 : TATG-ATCCATTTCAAAAAACCTTC--AAATTT-GC--A-T-CATATTTT-ATTGA-TTG-AATAA--TGACAG----AAA-ATTG-TGAAA
gi|72778 : TATA-TT--ATT-CAA-AAACCTTCAGAAATTT-GC--G-T-C--A-TTT-ATTGA-TTG--A-AA--TGACAG----AAATAT-G-TGAAA
gi|72779 : TATA-TTCCATT-CAA-AAA-CTTCA-AAATTT-GCT-G-TCC--ATTTT-ATTGATTTG-AA-AA--TGACAGAAATAAATATAGTTGAAA
gi|72780 : TATA-TTCCATT-CGA-AAACCT-CA-AAATTT-GC--G-T-C--A-TTT-ATTGA--TG-AA-AA--TGACAG----AAAT
gi|72781 : TATA-TTCCATT-CAA-AAACCTTCA-AAA--T-GCCTG-T-C--ATTTT-ATTGA-TTT-GA-AA--TGACAG----AAA
gi|72782 : TATA-TTCCATT-CAA-AAA--------------AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72783 : ATA-T-CCATT-CAA-AAACCTTCA-AAATTT-AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGATAG----AAATATAG-TGAAA
gi|72784 : ATA-TTCCATC-CAA-AAAC-TTCA-AAATTTTGC--G-T-C--ATTTT-AATGG-ATG-AA-AA--TGAC-G----AAATATAG-TGAAA
gi|72785 : ATA-TTC-ATT-AAA-AATCCT--A-AAATTT-GC--G-T-C--ATTTG-ATTGA-TTG----AA--TGACAGCA--AAATATAA-TGAA
gi|72786 : TA-TTCTATT-CAA-A--CCTTCA-AAA-TT-GC--G-T-C--ATTTTAATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72787 : TA-TTCCATT-CAA-AAACCTTC---AATTT-GCGAG-T-C--ATTTT-TTGGACTTG-AA-AAGTTTACGG----TAATACA
gi|72788 : TCA-AAATTT-GC--G-T-C--AGTTT-ATTAA-TTG-AA-AA--TGAC----------ATAG-TGAAA
Alignments
lowQualScore : 2 2 2 2 4 88 2 2 33 2 4 2 2 33 7777 0 2
lowQualScore : . . . . . .. . . .. . . . . .. .... . .
lowQualScore : 4 4 4 2 4 33 2 2 11 2 4 2 2 11 8888 6 7
consensus : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
Reference ( family-904 ) : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72771 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GT--G-T-C--ATTTT-ATTGA-TTGAAA-AA--TGACAG----AAATATAG-TGAAA
gi|72772 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAA-ATAT-TGAAA
gi|72773 : TATAATTCCATT-CAA-AAACCTTCG-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TTACAG----AAATATAG-TGAAA
gi|72774 : TATA-TTCCAAT-CAA-AAACCTTCA-AAATTT-TC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAACATAG-TGAAA
gi|72775 : TATA-TTCTATT-CAA-AAACCTTCA-AAATTTTGC--GGT-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAA
gi|72776 : TATA-T-CCATT-CAA-AAACCTTCA-AAATTT-GC--A-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAAAATAG-TGAAA
gi|72777 : TATG-ATCCATTTCAAAAAACCTTC--AAATTT-GC--A-T-CATATTTT-ATTGA-TTG-AATAA--TGACAG----AAA-ATTG-TGAAA
gi|72778 : TATA-TT--ATT-CAA-AAACCTTCAGAAATTT-GC--G-T-C--A-TTT-ATTGA-TTG--A-AA--TGACAG----AAATAT-G-TGAAA
gi|72779 : TATA-TTCCATT-CAA-AAA-CTTCA-AAATTT-GCT-G-TCC--ATTTT-ATTGATTTG-AA-AA--TGACAGAAATAAATATAGTTGAAA
gi|72780 : TATA-TTCCATT-CGA-AAACCT-CA-AAATTT-GC--G-T-C--A-TTT-ATTGA--TG-AA-AA--TGACAG----AAAT
gi|72781 : TATA-TTCCATT-CAA-AAACCTTCA-AAA--T-GCCTG-T-C--ATTTT-ATTGA-TTT-GA-AA--TGACAG----AAA
gi|72782 : TATA-TTCCATT-CAA-AAA--------------AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72783 : ATA-T-CCATT-CAA-AAACCTTCA-AAATTT-AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGATAG----AAATATAG-TGAAA
gi|72784 : ATA-TTCCATC-CAA-AAAC-TTCA-AAATTTTGC--G-T-C--ATTTT-AATGG-ATG-AA-AA--TGAC-G----AAATATAG-TGAAA
gi|72785 : ATA-TTC-ATT-AAA-AATCCT--A-AAATTT-GC--G-T-C--ATTTG-ATTGA-TTG----AA--TGACAGCA--AAATATAA-TGAA
gi|72786 : TA-TTCTATT-CAA-A--CCTTCA-AAA-TT-GC--G-T-C--ATTTTAATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72787 : TA-TTCCATT-CAA-AAACCTTC---AATTT-GCGAG-T-C--ATTTT-TTGGACTTG-AA-AAGTTTACGG----TAATACA
gi|72788 : TCA-AAATTT-GC--G-T-C--AGTTT-ATTAA-TTG-AA-AA--TGAC----------ATAG-TGAAA
blockSeqs : A T A G T CT G C AT A T . T GT AAAT T
blockSeqs : . . . . T GA . . . . C . . . CA .
blockSeqs : . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
finalCons : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
Alignments
lowQualScore : 2 2 2 2 4 88 2 2 33 2 4 2 2 33 7777 0 2
lowQualScore : . . . . . .. . . .. . . . . .. .... . .
lowQualScore : 4 4 4 2 4 33 2 2 11 2 4 2 2 11 8888 6 7
consensus : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
Reference ( family-904 ) : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72771 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GT--G-T-C--ATTTT-ATTGA-TTGAAA-AA--TGACAG----AAATATAG-TGAAA
gi|72772 : TATA-TTCCATT-CAA-AAACCTTCA-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAA-ATAT-TGAAA
gi|72773 : TATAATTCCATT-CAA-AAACCTTCG-AAATTT-GC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TTACAG----AAATATAG-TGAAA
gi|72774 : TATA-TTCCAAT-CAA-AAACCTTCA-AAATTT-TC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAACATAG-TGAAA
gi|72775 : TATA-TTCTATT-CAA-AAACCTTCA-AAATTTTGC--GGT-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAA
gi|72776 : TATA-T-CCATT-CAA-AAACCTTCA-AAATTT-GC--A-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAAAATAG-TGAAA
gi|72777 : TATG-ATCCATTTCAAAAAACCTTC--AAATTT-GC--A-T-CATATTTT-ATTGA-TTG-AATAA--TGACAG----AAA-ATTG-TGAAA
gi|72778 : TATA-TT--ATT-CAA-AAACCTTCAGAAATTT-GC--G-T-C--A-TTT-ATTGA-TTG--A-AA--TGACAG----AAATAT-G-TGAAA
gi|72779 : TATA-TTCCATT-CAA-AAA-CTTCA-AAATTT-GCT-G-TCC--ATTTT-ATTGATTTG-AA-AA--TGACAGAAATAAATATAGTTGAAA
gi|72780 : TATA-TTCCATT-CGA-AAACCT-CA-AAATTT-GC--G-T-C--A-TTT-ATTGA--TG-AA-AA--TGACAG----AAAT
gi|72781 : TATA-TTCCATT-CAA-AAACCTTCA-AAA--T-GCCTG-T-C--ATTTT-ATTGA-TTT-GA-AA--TGACAG----AAA
gi|72782 : TATA-TTCCATT-CAA-AAA--------------AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72783 : ATA-T-CCATT-CAA-AAACCTTCA-AAATTT-AC--G-T-C--ATTTT-ATTGA-TTG-AA-AA--TGATAG----AAATATAG-TGAAA
gi|72784 : ATA-TTCCATC-CAA-AAAC-TTCA-AAATTTTGC--G-T-C--ATTTT-AATGG-ATG-AA-AA--TGAC-G----AAATATAG-TGAAA
gi|72785 : ATA-TTC-ATT-AAA-AATCCT--A-AAATTT-GC--G-T-C--ATTTG-ATTGA-TTG----AA--TGACAGCA--AAATATAA-TGAA
gi|72786 : TA-TTCTATT-CAA-A--CCTTCA-AAA-TT-GC--G-T-C--ATTTTAATTGA-TTG-AA-AA--TGACAG----AAATATAG-TGAAA
gi|72787 : TA-TTCCATT-CAA-AAACCTTC---AATTT-GCGAG-T-C--ATTTT-TTGGACTTG-AA-AAGTTTACGG----TAATACA
gi|72788 : TCA-AAATTT-GC--G-T-C--AGTTT-ATTAA-TTG-AA-AA--TGAC----------ATAG-TGAAA