lowQualScore : 11 11 22222222 111111
lowQualScore : 6 00 33 2 8 2 6 7 2 44444444 7 2 2 2 2 33 444 000000 3 3 44 6
lowQualScore : . .. .. . . . . . . ........ . . . . . .. ... ...... . . .. .
lowQualScore : 9 00 44 5 2 4 8 1 4 11111111 1 4 4 4 4 22 111 333333 1 1 66 7
consensus : AATAGTTCCTG--TCAAGGGTT-GAA-TNAAAGA-GCT-ATTCCAC----A--ATCA-C-AG-CCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
Reference ( gi|8557 ) : AATAATTCCTG--TCAAGGGTT-GGA-TTAAAGA-GCT-ATTCCAC----A--ATCA-C-AG-CCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8559 : AATAGTACCTG--TCAAGGGTT-GGA-TTAAAGA-GAT-ATTCCAC----A--ATCA-C-AG-TCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8562 : AATAGTTCTTG--TCAAAGTTT-GAA-TTAAAGA-GCT-ATTCGAC----A--ATCA-C-AC-CCA-ATGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8564 : AATAGCTCCTG--TCAAGGGTT-GAA-TCAATGA-GCTTATTCCAC----A--ATCAAC-AG-CCA-GTGAA-TA--A---GTG-TTT--TATT-TATACT--G-ATGTCTA
gi|8565 : AATAGTTCCTG--TCAAGGGTT-GAA-TCAAAGA-GCT-ATT-CAC----A--ATCACC-AG-CCACGTGAAGTA--A---GTGTTTT--TA-T-TATACT--G-ATGTCTA
gi|8570 : AATAGGTCCTG--TCTCGGGTT-GAA-TAAAAGA-GCT-ATT--AC----A--ATCA-C-AG-CCA-GTGAA-TA--A---GTG-TATACTA-TCTATGTTGAG-ATGTTT
gi|8561 : AATAGTTCCTG--CCTCGGGTT-GAA-TAAGAGA-GCC-ATTCCAC--------TCA-C-AG-CCA-GTGAA-TA--A---GTG-TATACTA-T-TCAAC---G-ATATC
gi|8560 : AATAGTTCCTG--CCTCGGGTT-GAA-TAAAAGA-GCT-ATTCCAC--------TCA-C-AG-CCA-GTGAA-TAACA---GTA------TA-A-TATACT--A-
gi|8558 : AATAGCTCCTGCCTC---GGTT-GAA-TAAAAGA-GCT-ATTCCAC--------TCA-C-AG-CCA-GTGAA-TA--A---GTG-T
gi|8566 : AATAGTTCATGC-TC---GGTT-G-A-TAAAAGA-GCT-ATTCCAC--------TCA-C-AG-CCA-GTGAA-TA--A---GTG-T
gi|8569 : AATAGTTCCTGCCTC---GGTT-GAA-ATAAAGAAGCT-ATTCCACGCACA--CTCA-C-AG-CCA-GTGAA-TA--A---GTG-T
gi|8563 : AATATGTCCTG--TCTCGTGTT-GAA-TAAAAGA-ACT-ATTCCAC--------TCA-C-AG-CCA-GTGGA-TA--A---GTG--TA--TA-A-TATACC--G--TGT-TAT
gi|8567 : AATAGTTACTG--CCTTGGGGT-TAA-TAAAAGA-ACT-ATTCCAC----C---TCAAC-AG-CCA-GTGAA-TA--AAGTGTA-TTC--TA-T-T
gi|8571 : TTCCTG--TCAAGGGTT-GAAATCAAAGA-GCT-ATTCTAC----AATATCA-CAAG-CCA-GTG-A-TA--A---GTG-TTT--TA-T-T-TACT--GAATGTCTA
gi|8568 : atagtTTCCTG--TCAAGGGTTCGAA-TCAAAGAAGCT-AGTCCACC---A--ATCA-C-ATTCCA-GTGAA-TA--A---GTG---T--TA-T-TATACT--GAATGTCTA
gi|8572 : aatgTCCTG--TCAAGGGTT-GGA-TTAAAGA-GCT-ATTCCGC----A--ATCA-C-AG-CCA-GTGAA-TA--G---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8573 : GGTT-G-A-TAAAAGAAGCT-ATTCCAC--------TCA-C-AG-CCA-GTGAA-TA--A---GTG-T
gi|8574 : A-TTAAAGA-GCT-ATTCCAC----A--ATCA-C-AG-CCA-GTGAA------------------------ATACT--G-ATGTTTA
Alignments
lowQualScore : 11 11111111
lowQualScore : 2 99 11 2 2 1 2 4 2 2 99999999 2 4 2 2 2 2 33 333 22 77 2 2 44 6
lowQualScore : . .. .. . . . . . . . ........ . . . . . . .. ... .. .. . . .. .
lowQualScore : 5 44 44 4 2 0 2 4 2 2 55555555 2 4 2 2 2 2 11 999 77 99 9 9 22 2
consensus : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
Reference ( family-900 ) : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8557 : AATAATT-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8558 : AATAGCT-CCTGCCTC---GGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8559 : AATAGTA-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GA-TATTCCA-C----A--ATC-A-C-A-GTCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8560 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TAACA---GTA------TA-A-TATACT--A-
gi|8561 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAGAG-A-GC-CATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-T-TCAAC---G-ATATC
gi|8562 : AATAGTT-CTTG--TCAAAGTTT-GAA-TTAAAG-A-GC-TATTCGA-C----A--ATC-A-C-A-CCCA-ATGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8563 : AATATGT-CCTG--TCTCGTGTT-GAA-TAAAAG-A-AC-TATTCCA-C--------TC-A-C-A-GCCA-GTGGA-TA--A---GTG--TA--TA-A-TATACC--G--TGT-TAT
gi|8564 : AATAGCT-CCTG--TCAAGGGTT-GAA-TCAATG-A-GCTTATTCCA-C----A--ATCAA-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TATT-TATACT--G-ATGTCTA
gi|8565 : AATAGTT-CCTG--TCAAGGGTT-GAA-TCAAAG-A-GC-TATT-CA-C----A--ATC-ACC-A-GCCACGTGAAGTA--A---GTGTTTT--TA-T-TATACT--G-ATGTCTA
gi|8566 : AATAGTT-CATGC-TC---GGTT-GA--TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8567 : AATAGTT-ACTG--CCTTGGGGT-TAA-TAAAAG-A-AC-TATTCCA-C----C---TC-AAC-A-GCCA-GTGAA-TA--AAGTGTA-TTC--TA-T-T
gi|8568 : AAT-GTT-CCTG--TCAAGGGTTCGAA-TCAAAGAA-GC-TAGTCCACC----A--ATC-A-C-ATTCCA-GTGAA-TA--A---GTG---T--TA-T-TATACT--GAATGTCTA
gi|8569 : AATAGTT-CCTGCCTC---GGTT-GAA-ATAAAG-AAGC-TATTCCA-CGCACA--CTC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8570 : AATAGGT-CCTG--TCTCGGGTT-GAA-TAAAAG-A-GC-TATT--A-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-TCTATGTTGAG-ATGTTT
gi|8571 : ATAGTTTCCTG--TCAAGGGTT-GAAATCAAAG-A-GC-TATTCTA-C----AATATC-A-CAA-GCCA-GTG-A-TA--A---GTG-TTT--TA-T-T-TACT--GAATGTCTA
gi|8572 : T-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCG-C----A--ATC-A-C-A-GCCA-GTGAA-TA--G---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8573 : GGTT-GA--TAAAAG-AAGC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8574 : A-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA------------------------ATACT--G-ATGTTTA
Alignments
lowQualScore : 11 11111111
lowQualScore : 2 99 11 2 2 1 2 4 2 2 99999999 2 4 2 2 2 2 33 333 22 77 2 2 44 6
lowQualScore : . .. .. . . . . . . . ........ . . . . . . .. ... .. .. . . .. .
lowQualScore : 5 44 44 4 2 0 2 4 2 2 55555555 2 4 2 2 2 2 11 999 77 99 9 9 22 2
consensus : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
Reference ( family-900 ) : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8557 : AATAATT-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8558 : AATAGCT-CCTGCCTC---GGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8559 : AATAGTA-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GA-TATTCCA-C----A--ATC-A-C-A-GTCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8560 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TAACA---GTA------TA-A-TATACT--A-
gi|8561 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAGAG-A-GC-CATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-T-TCAAC---G-ATATC
gi|8562 : AATAGTT-CTTG--TCAAAGTTT-GAA-TTAAAG-A-GC-TATTCGA-C----A--ATC-A-C-A-CCCA-ATGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8563 : AATATGT-CCTG--TCTCGTGTT-GAA-TAAAAG-A-AC-TATTCCA-C--------TC-A-C-A-GCCA-GTGGA-TA--A---GTG--TA--TA-A-TATACC--G--TGT-TAT
gi|8564 : AATAGCT-CCTG--TCAAGGGTT-GAA-TCAATG-A-GCTTATTCCA-C----A--ATCAA-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TATT-TATACT--G-ATGTCTA
gi|8565 : AATAGTT-CCTG--TCAAGGGTT-GAA-TCAAAG-A-GC-TATT-CA-C----A--ATC-ACC-A-GCCACGTGAAGTA--A---GTGTTTT--TA-T-TATACT--G-ATGTCTA
gi|8566 : AATAGTT-CATGC-TC---GGTT-GA--TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8567 : AATAGTT-ACTG--CCTTGGGGT-TAA-TAAAAG-A-AC-TATTCCA-C----C---TC-AAC-A-GCCA-GTGAA-TA--AAGTGTA-TTC--TA-T-T
gi|8568 : AAT-GTT-CCTG--TCAAGGGTTCGAA-TCAAAGAA-GC-TAGTCCACC----A--ATC-A-C-ATTCCA-GTGAA-TA--A---GTG---T--TA-T-TATACT--GAATGTCTA
gi|8569 : AATAGTT-CCTGCCTC---GGTT-GAA-ATAAAG-AAGC-TATTCCA-CGCACA--CTC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8570 : AATAGGT-CCTG--TCTCGGGTT-GAA-TAAAAG-A-GC-TATT--A-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-TCTATGTTGAG-ATGTTT
gi|8571 : ATAGTTTCCTG--TCAAGGGTT-GAAATCAAAG-A-GC-TATTCTA-C----AATATC-A-CAA-GCCA-GTG-A-TA--A---GTG-TTT--TA-T-T-TACT--GAATGTCTA
gi|8572 : T-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCG-C----A--ATC-A-C-A-GCCA-GTGAA-TA--G---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8573 : GGTT-GA--TAAAAG-AAGC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8574 : A-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA------------------------ATACT--G-ATGTTTA
blockSeqs : T CC AA C A A A A T C GCACAC A C A T C G AC AGT TT AC T C GA A
blockSeqs : . CC TC . . T . A . . AATA . A . . . . . . T AC . . . A
blockSeqs : . C TC . . A . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . AA . . A . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . TC . . T . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . AA . . A . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . AA . . C . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . TT . . C . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . AA . . A . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . TC . . A . . . . AA . . . . . . . . T . . . . .
blockSeqs : . . AA . . C . . . . C . . . . . . . . T . . . . .
blockSeqs : . . AA . . T . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . .
blockSeqCons :
originalCons : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
finalCons : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
Alignments
lowQualScore : 11 11111111
lowQualScore : 2 99 11 2 2 1 2 4 2 2 99999999 2 4 2 2 2 2 33 333 22 77 2 2 44 6
lowQualScore : . .. .. . . . . . . . ........ . . . . . . .. ... .. .. . . .. .
lowQualScore : 5 44 44 4 2 0 2 4 2 2 55555555 2 4 2 2 2 2 11 999 77 99 9 9 22 2
consensus : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
Reference ( family-900 ) : AATAGTT-CCTG--TCAAGGGTT-GAA-TNAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8557 : AATAATT-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8558 : AATAGCT-CCTGCCTC---GGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8559 : AATAGTA-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GA-TATTCCA-C----A--ATC-A-C-A-GTCA-GTGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8560 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TAACA---GTA------TA-A-TATACT--A-
gi|8561 : AATAGTT-CCTG--CCTCGGGTT-GAA-TAAGAG-A-GC-CATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-T-TCAAC---G-ATATC
gi|8562 : AATAGTT-CTTG--TCAAAGTTT-GAA-TTAAAG-A-GC-TATTCGA-C----A--ATC-A-C-A-CCCA-ATGAA-TA--A---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8563 : AATATGT-CCTG--TCTCGTGTT-GAA-TAAAAG-A-AC-TATTCCA-C--------TC-A-C-A-GCCA-GTGGA-TA--A---GTG--TA--TA-A-TATACC--G--TGT-TAT
gi|8564 : AATAGCT-CCTG--TCAAGGGTT-GAA-TCAATG-A-GCTTATTCCA-C----A--ATCAA-C-A-GCCA-GTGAA-TA--A---GTG-TTT--TATT-TATACT--G-ATGTCTA
gi|8565 : AATAGTT-CCTG--TCAAGGGTT-GAA-TCAAAG-A-GC-TATT-CA-C----A--ATC-ACC-A-GCCACGTGAAGTA--A---GTGTTTT--TA-T-TATACT--G-ATGTCTA
gi|8566 : AATAGTT-CATGC-TC---GGTT-GA--TAAAAG-A-GC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8567 : AATAGTT-ACTG--CCTTGGGGT-TAA-TAAAAG-A-AC-TATTCCA-C----C---TC-AAC-A-GCCA-GTGAA-TA--AAGTGTA-TTC--TA-T-T
gi|8568 : AAT-GTT-CCTG--TCAAGGGTTCGAA-TCAAAGAA-GC-TAGTCCACC----A--ATC-A-C-ATTCCA-GTGAA-TA--A---GTG---T--TA-T-TATACT--GAATGTCTA
gi|8569 : AATAGTT-CCTGCCTC---GGTT-GAA-ATAAAG-AAGC-TATTCCA-CGCACA--CTC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8570 : AATAGGT-CCTG--TCTCGGGTT-GAA-TAAAAG-A-GC-TATT--A-C----A--ATC-A-C-A-GCCA-GTGAA-TA--A---GTG-TATACTA-TCTATGTTGAG-ATGTTT
gi|8571 : ATAGTTTCCTG--TCAAGGGTT-GAAATCAAAG-A-GC-TATTCTA-C----AATATC-A-CAA-GCCA-GTG-A-TA--A---GTG-TTT--TA-T-T-TACT--GAATGTCTA
gi|8572 : T-CCTG--TCAAGGGTT-GGA-TTAAAG-A-GC-TATTCCG-C----A--ATC-A-C-A-GCCA-GTGAA-TA--G---GTG-TTT--TA-T-TATACT--G-ATGTCTAT
gi|8573 : GGTT-GA--TAAAAG-AAGC-TATTCCA-C--------TC-A-C-A-GCCA-GTGAA-TA--A---GTG-T
gi|8574 : A-TTAAAG-A-GC-TATTCCA-C----A--ATC-A-C-A-GCCA-GTGAA------------------------ATACT--G-ATGTTTA