lowQualScore : 11111111
lowQualScore : 2 2 2 2 33 2 33 33 33 2 11111111 2 2 2
lowQualScore : . . . . .. . .. .. .. . ........ . . .
lowQualScore : 4 4 4 4 22 4 22 22 22 5 88888888 5 5 5
consensus : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA-TACATG-C------A-AG-CT-ACGCCA
Reference ( gi|121899 ) : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA-TACATG-T------A-AG-CT-ACGCCA
gi|121898 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA-TACATG-T------A-AG-CT-ACGCCA
gi|121900 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--TCAAGCA-TACATG-T------A-AG-CT-ACACCA
gi|121901 : AAAAATTGGGCAAA-ATGA-TGT-GCAT--GCT-TG--G--GCAT--CCAAGCA-TACATG-T------A-AG-CT-ACGCCA
gi|121902 : AAAAA---GGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA-TACATG-C------A-AG-CT-ACGCCA
gi|121903 : AAAAAT-AGGCAAA-ATTA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA-TACATG-T------A-AG-CT-ACAC
gi|121904 : AAAGAT-TGGCAAA-GTGA-TGT-GGAT--GCT-TG--A--GCAT--CCGAGCA-TACATG-C------A-AG-CT-ACGCCA
gi|121905 : AAAAAA-GGGCAACTATGA-TGT-GGAT--GCC-TG--A--GCAT--CCAAGCA-TACATG-C------A-CG-CT-ACGCCA
gi|121906 : AAAAAT-TGACAAA-ATGA-TGT-GGAT--GCT-TG--A--GCATCACCAAGCACTACATG-C------ACAG-CT-ACGCCA
gi|121907 : AAAAAT-TGCCAAA-ACGA-TGT-GGAT--GCT-TT--A--GCAT--CCGAACA-TAAATG-C------A-AG-CT-ACGCCA
gi|121908 : AAAAAT-GGGCAAA-ATGA-T-C-GTCT--GCT-TG--ACGGCAT--CCAAGCA-TACATGTT------A-AGACTAACGCCA
gi|121910 : AAAAAT-GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAGC
gi|121909 : AAAAAT-GG-CAAA--TGA-TGTTGGATTGGCTCTG--A--GCAT--CAAAGCA-TACATG-C------A-AG-CT-ACGC
gi|121911 : AAAAT-TGGCAAA-ATGATTGT-GGAT--GAT-TGTAA--GCAC--TAAAGC--TACATG-C------A-AG-AT-TCGCCA
gi|121912 : AT-TGGCAAA-ATGA-TAT-GGAT--GCT-T--------AT--CCAATCA-TACATG-TACATGCA-AG-CT-ACGCCA
gi|121913 : T-GGACAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAACA-TACATG-G------T-AG-GT-ACGCC
gi|121914 : T-GGCCAAA-ATGA-TGT-GATT--GCT-TG--A--GCAT--GCAGTCA-TACATG-G------T-AG-AT-ACGC
gi|121915 : -GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--GCAAGCA-TACATG-G------T-AG-GT-ACGCCA
Alignments
lowQualScore : 2 2 2 2 33 2 33 33 33 999999 22 2 2 2
lowQualScore : . . . . .. . .. .. .. ...... .. . . .
lowQualScore : 2 2 2 2 11 2 11 11 11 111111 44 4 4 4
consensus : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
Reference ( family-897 ) : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121898 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121899 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121900 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--TCAAGCA------TACATG-TA-AG-CT-ACACCA
gi|121901 : AAAAATTGGGCAAA-ATGA-TGT-GCAT--GCT-TG--G--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121902 : AAAAA---GGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121903 : AAAAAT-AGGCAAA-ATTA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACAC
gi|121904 : AAAGAT-TGGCAAA-GTGA-TGT-GGAT--GCT-TG--A--GCAT--CCGAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121905 : AAAAAA-GGGCAACTATGA-TGT-GGAT--GCC-TG--A--GCAT--CCAAGCA------TACATG-CA-CG-CT-ACGCCA
gi|121906 : AAAAAT-TGACAAA-ATGA-TGT-GGAT--GCT-TG--A--GCATCACCAAGCAC-----TACATG-CACAG-CT-ACGCCA
gi|121907 : AAAAAT-TGCCAAA-ACGA-TGT-GGAT--GCT-TT--A--GCAT--CCGAACA------TAAATG-CA-AG-CT-ACGCCA
gi|121908 : AAAAAT-GGGCAAA-ATGA-T-C-GTCT--GCT-TG--ACGGCAT--CCAAGCA------TACATGTTA-AGACTAACGCCA
gi|121909 : AAAAAT-GG-CAAA--TGA-TGTTGGATTGGCTCTG--A--GCAT--CAAAGCA------TACATG-CA-AG-CT-ACGC
gi|121910 : AAAAAT-GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAGC
gi|121911 : AAAAT-TGGCAAA-ATGATTGT-GGAT--GAT-TGTAA--GCAC--TAAAGC-------TACATG-CA-AG-AT-TCGCCA
gi|121912 : AT-TGGCAAA-ATGA-TAT-GGAT--GCT-T--------AT--CCAATCATACATGTACATG-CA-AG-CT-ACGCCA
gi|121913 : T-GGACAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAACA------TACATG-GT-AG-GT-ACGCC
gi|121914 : T-GGCCAAA-ATGA-TGT-GATT--GCT-TG--A--GCAT--GCAGTCA------TACATG-GT-AG-AT-ACGC
gi|121915 : -GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--GCAAGCA------TACATG-GT-AG-GT-ACGCCA
Alignments
lowQualScore : 2 2 2 2 33 2 33 33 33 999999 22 2 2 2
lowQualScore : . . . . .. . .. .. .. ...... .. . . .
lowQualScore : 2 2 2 2 11 2 11 11 11 111111 44 4 4 4
consensus : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
Reference ( family-897 ) : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121898 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121899 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121900 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--TCAAGCA------TACATG-TA-AG-CT-ACACCA
gi|121901 : AAAAATTGGGCAAA-ATGA-TGT-GCAT--GCT-TG--G--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121902 : AAAAA---GGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121903 : AAAAAT-AGGCAAA-ATTA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACAC
gi|121904 : AAAGAT-TGGCAAA-GTGA-TGT-GGAT--GCT-TG--A--GCAT--CCGAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121905 : AAAAAA-GGGCAACTATGA-TGT-GGAT--GCC-TG--A--GCAT--CCAAGCA------TACATG-CA-CG-CT-ACGCCA
gi|121906 : AAAAAT-TGACAAA-ATGA-TGT-GGAT--GCT-TG--A--GCATCACCAAGCAC-----TACATG-CACAG-CT-ACGCCA
gi|121907 : AAAAAT-TGCCAAA-ACGA-TGT-GGAT--GCT-TT--A--GCAT--CCGAACA------TAAATG-CA-AG-CT-ACGCCA
gi|121908 : AAAAAT-GGGCAAA-ATGA-T-C-GTCT--GCT-TG--ACGGCAT--CCAAGCA------TACATGTTA-AGACTAACGCCA
gi|121909 : AAAAAT-GG-CAAA--TGA-TGTTGGATTGGCTCTG--A--GCAT--CAAAGCA------TACATG-CA-AG-CT-ACGC
gi|121910 : AAAAAT-GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAGC
gi|121911 : AAAAT-TGGCAAA-ATGATTGT-GGAT--GAT-TGTAA--GCAC--TAAAGC-------TACATG-CA-AG-AT-TCGCCA
gi|121912 : AT-TGGCAAA-ATGA-TAT-GGAT--GCT-T--------AT--CCAATCATACATGTACATG-CA-AG-CT-ACGCCA
gi|121913 : T-GGACAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAACA------TACATG-GT-AG-GT-ACGCC
gi|121914 : T-GGCCAAA-ATGA-TGT-GATT--GCT-TG--A--GCAT--GCAGTCA------TACATG-GT-AG-AT-ACGC
gi|121915 : -GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--GCAAGCA------TACATG-GT-AG-GT-ACGCCA
blockSeqs : T T T T TG C TA CG CA TACATG TT C A A
blockSeqs : . . . . . . . . . C T . . .
blockSeqs : . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
finalCons : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
Alignments
lowQualScore : 2 2 2 2 33 2 33 33 33 999999 22 2 2 2
lowQualScore : . . . . .. . .. .. .. ...... .. . . .
lowQualScore : 2 2 2 2 11 2 11 11 11 111111 44 4 4 4
consensus : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
Reference ( family-897 ) : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121898 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121899 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121900 : AAAAAT-GGGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--TCAAGCA------TACATG-TA-AG-CT-ACACCA
gi|121901 : AAAAATTGGGCAAA-ATGA-TGT-GCAT--GCT-TG--G--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACGCCA
gi|121902 : AAAAA---GGCAAA-ATGA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121903 : AAAAAT-AGGCAAA-ATTA-TGT-GGAT--GCT-TG--A--GCAT--CCAAGCA------TACATG-TA-AG-CT-ACAC
gi|121904 : AAAGAT-TGGCAAA-GTGA-TGT-GGAT--GCT-TG--A--GCAT--CCGAGCA------TACATG-CA-AG-CT-ACGCCA
gi|121905 : AAAAAA-GGGCAACTATGA-TGT-GGAT--GCC-TG--A--GCAT--CCAAGCA------TACATG-CA-CG-CT-ACGCCA
gi|121906 : AAAAAT-TGACAAA-ATGA-TGT-GGAT--GCT-TG--A--GCATCACCAAGCAC-----TACATG-CACAG-CT-ACGCCA
gi|121907 : AAAAAT-TGCCAAA-ACGA-TGT-GGAT--GCT-TT--A--GCAT--CCGAACA------TAAATG-CA-AG-CT-ACGCCA
gi|121908 : AAAAAT-GGGCAAA-ATGA-T-C-GTCT--GCT-TG--ACGGCAT--CCAAGCA------TACATGTTA-AGACTAACGCCA
gi|121909 : AAAAAT-GG-CAAA--TGA-TGTTGGATTGGCTCTG--A--GCAT--CAAAGCA------TACATG-CA-AG-CT-ACGC
gi|121910 : AAAAAT-GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAGC
gi|121911 : AAAAT-TGGCAAA-ATGATTGT-GGAT--GAT-TGTAA--GCAC--TAAAGC-------TACATG-CA-AG-AT-TCGCCA
gi|121912 : AT-TGGCAAA-ATGA-TAT-GGAT--GCT-T--------AT--CCAATCATACATGTACATG-CA-AG-CT-ACGCCA
gi|121913 : T-GGACAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--CCAAACA------TACATG-GT-AG-GT-ACGCC
gi|121914 : T-GGCCAAA-ATGA-TGT-GATT--GCT-TG--A--GCAT--GCAGTCA------TACATG-GT-AG-AT-ACGC
gi|121915 : -GGGCAAA-ATGA-TGT-GCAT--GCT-TG--A--GCAT--GCAAGCA------TACATG-GT-AG-GT-ACGCCA