lowQualScore : 1 111111 11
lowQualScore : 2 2 2 2 2 33 2 2 4 8888 33 444 2 33 55 33 6 33 2 4444 22 2 33 666666 2 2 2 2 55 333 7 666666 44 00 3
lowQualScore : . . . . . .. . . . .... .. ... . .. .. .. . .. . .... .. . .. ...... . . . . .. ... . ...... .. .. .
lowQualScore : 5 5 4 4 4 22 4 4 7 2222 22 111 4 22 66 22 8 22 4 3333 99 4 22 888888 4 4 4 1 66 999 9 111111 66 77 3
consensus : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAAAT--TT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---G--CATAT-GCCATTTCTCT-TCATCCTT
Reference ( gi|92179 ) : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTTAAT--TT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---G--CATAT-GCCATTTCTCT-TCATCCTT
gi|92180 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAAAT--TT-TAAA--A-TGAA-AC--AAG------A-A-A-ATTTACTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---G--CATAT-GCCATTTCTCT-TCATCC
gi|92181 : ATATAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAAGT--TT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---G--CATAT-GCCATTTCTCG-TCATCCTT
gi|92183 : ATGTAGCATTT-AGAATCA-TATAAA-G--T-AC-ACA----A--T---G-TTGACTTGAAGTGA--ATCA--TGTAAAT--TT-TAAC--A-TGAA-AC--AAG------A-A-G-ATTTATTTT---TATAAAT-A-TAGTGGGGACCGC-TA---G--CATAT-GCCATTTCTCT-TCATCCTT
gi|92182 : ATGTAGCATTT-A-AATCA-TA-AAT-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCG--TGTAAAT--TT-TAGC--A-TGAA-AT--AAG------A-A-A-AATTA--TTT--TATAAAT-A-TATTGGGGGCGGC-CA---G--CATAT-GCCATTTCTCT-TCATCC
gi|92184 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TAAACTGA--ATCA--TGTAAAT--TT-TAAC--A-TGAA-AT--AAGGAAAAAA-A-A-A--------T--TATAAAT-A-TATTGGGGGCCGC-CA---A--CACAT-GCCATTTATCT-TCATCCTT
gi|92188 : ATGTAGCATT--A-AATC--TC-AAA-G--T-AC-A-A----A--T-----TTGT--TAAACTGA--ATCA--TGTAAAT--TT-TAA---A-TGAA-AC--AAG------A-A-A-AT---TTTTT--TAT-AAT-A-TAGT-GGGGCCGC-TA---G--CACAT-GCC-CTTCTCT-TCATCCTT
gi|92185 : ATGTAACATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---A-TTGA--TGAAGTGA--ATTA--TGTAAAT--TT-T----------A-AC--AAG------A-A-A-A-TTAATTAT--TGTAAAT-A-TATTGGGGGCCGC-C-------TATAT-GCCATTTCTCT-TCATCCTT
gi|92186 : ATGTAACATTGGA-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAAAT--TC-TAGC--A-CGAA-AC--GAG------A-A-A-ATTTATTTTT--AATAAAT-T-TACT-GGGGCCGCATT---G--CATA--GCCATTTTTCT-TCATCC
gi|92187 : ATGTAACATTT-A-AATCA-TG-AAA-G--T-AA-A-A----A--T---A-TTAA--TGAACTCA--ATCA--TATAAAT--TT-TGCC--A-CG-A-AC--ATG------A-A-C-ATTTATTTTT--TATAAAT-A-TACTGGGGG-CGC--G---G--CACATAACCATTTCTCT-TCATCCTT
gi|92189 : ATATAACCATT-G-AATAAATA-AAA-G--T-AC-A-A----AGAT---G-TTAA--TGAAGTGA--ACCA--TGTAAAT--TC-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--ATTAAAT-A-TACTGGGGGCCG--TATTTG--CACA--GCCATTTCTCTATCATCCTT
gi|92190 : ATATAACATTT-A-AATCA-TA-AAA-G--T-ACCA-A----A--T---G-TTGA--TGAACTGA--ATCA--TG-TAAT--TT-AAAG--T-TGAA-ACAGAAG------ACA-ACATTTATTTTT--
gi|92191 : ATATAACATTG-A-AAT-A-TA-AAA-AAAT-AC-ACA----A--T---G-TTAA--TGAAGTGA--ACCA--TGT-AATGTCT-TGTC--A--GAATAC--A-G------A-A-A-ATTTATTTTT--C-TAAATAA-TACTGGGGGCCGC-
gi|92192 : TAACATGT-G-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAAAT--TTCTAGC--A-CGAA-AC--GAG------A-A-A-ATTTA--TTT--TATAAAT-T-TACTGGGGGCCGCATT---G--CATA--GCCATTTTTCT-TCATCC
gi|92193 : AACATTG-A-AATCA-TG-AAA-G--TCAC-A-A----A--T---G-TTAA--TTAACAGAACATCACGTGTAAAT--TC-TAGC--AGCGAA-AC--AAG------A-ACA-ATTTATTCTTCCCATAAAT-ATTACTGGGGGCCGC-
gi|92194 : ATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--TTATG-TCAA--TGAGTTGA--ATCA--TATAAAT--TT-TATC--A-TGAA-AC--AAG------A-A-A-ATGT-TTTTC--TATTAA
gi|92195 : ATTT-A-AATCA-TA-AAAAG--T-AA-A-ATT--A--T---GATCAA--TGAGTTGC--ATCA--TAGAAAT--TT-TATC--C-TGAA-AC--AAG------A-A-A----TGTTTTTC-TATTAA
gi|92196 : A-TA-AAA-T--T-A--A-ATGATA--T---G-TTAA--TGAACAGAC-ATCA--TGTAAAT--TC-TAGCCCA-CGAA-AC--GAG------A-A-A-ATTTTATTAT--TATAAAT---TACTGGGGGCCGCATT---GCCCATA--GCCATTTCTCT-TCATCCgggcatacggcaatgtcaccatttc
Alignments
lowQualScore : 111111
lowQualScore : 2 2 2 2 2 33 2 2 4 7777 33 333 2 33 55 33 2 2 3 33 55 2 33 666666 2 2 2 1 55 333 1 333333 88 3
lowQualScore : . . . . . .. . . . .... .. ... . .. .. .. . . . .. .. . .. ...... . . . . .. ... . ...... .. .
lowQualScore : 4 4 2 2 2 11 2 2 4 8888 11 999 2 11 33 11 2 2 2 11 33 2 11 444444 2 2 2 5 33 111 5 555555 55 1
consensus : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
Reference ( family-896 ) : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92179 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTTA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92180 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAAA--A-TGAA-AC--AAG------A-A-A-ATTTACTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCC
gi|92181 : ATATAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-GTTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCG-TCATCCTT
gi|92182 : ATGTAGCATTT-A-AATCA-TA-AAT-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCG--TGTAA-ATTT-TAGC--A-TGAA-AT--AAG------A-A-A-AATTA--TTT--TATAAAT-A-TATTGGGGGCGGC-CA---GCATAT-GCCATTTCTCT-TCATCC
gi|92183 : ATGTAGCATTT-AGAATCA-TATAAA-G--T-AC-ACA----A--T---G-TTGACTTGAAGTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-G-ATTTATTTT---TATAAAT-A-TAGTGGGGACCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92184 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TAAACTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AT--AAGGAAAAAA-A-A-A--------T--TATAAAT-A-TATTGGGGGCCGC-CA---ACACAT-GCCATTTATCT-TCATCCTT
gi|92185 : ATGTAACATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---A-TTGA--TGAAGTGA--ATTA--TGTAA-ATTT-T----------A-AC--AAG------A-A-A-A-TTAATTAT--TGTAAAT-A-TATTGGGGGCCGC-C-----TATAT-GCCATTTCTCT-TCATCCTT
gi|92186 : ATGTAACATTGGA-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTC-TAGC--A-CGAA-AC--GAG------A-A-A-ATTTATTTTT--AATAAAT-T-TACT-GGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92187 : ATGTAACATTT-A-AATCA-TG-AAA-G--T-AA-A-A----A--T---A-TTAA--TGAACTCA--ATCA--TATAA-ATTT-TGCC--A-CG-A-AC--ATG------A-A-C-ATTTATTTTT--TATAAAT-A-TACTGGGGG-CGC--G---GCACATAACCATTTCTCT-TCATCCTT
gi|92188 : ATGTAGCATT--A-AATC--TC-AAA-G--T-AC-A-A----A--T-----TTGT--TAAACTGA--ATCA--TGTAA-ATTT-TAA---A-TGAA-AC--AAG------A-A-A-AT---TTTTT--TAT-AAT-A-TAGT-GGGGCCGC-TA---GCACAT-GCC-CTTCTCT-TCATCCTT
gi|92189 : ATATAACCATT-G-AATAAATA-AAA-G--T-AC-A-A----AGAT---G-TTAA--TGAAGTGA--ACCA--TGTAA-ATTC-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--ATTAAAT-A-TACTGGGGGCCG--TATTTGCACA--GCCATTTCTCTATCATCCTT
gi|92190 : ATATAACATTT-A-AATCA-TA-AAA-G--T-ACCA-A----A--T---G-TTGA--TGAACTGA--ATCA--TGT-A-ATTT-AAAG--T-TGAA-ACAGAAG------ACA-ACATTTATTTTT--
gi|92191 : ATATAACATTG-A-AAT-A-TA-AAA-AAAT-AC-ACA----A--T---G-TTAA--TGAAGTGA--ACCA--TGTAATGTCT-TGTC--A--GAATAC--A-G------A-A-A-ATTTATTTTT--C-TAAATAA-TACTGGGGGCCGC-
gi|92192 : TAACATGT-G-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTTCTAGC--A-CGAA-AC--GAG------A-A-A-ATTTA--TTT--TATAAAT-T-TACTGGGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92193 : AACATTG-A-AATCA-TG-AAA-G--TCAC-A-A----A--T---G-TTAA--TTAACAGAACATCACGTGTAA-ATTC-TAGC--AGCGAA-AC--AAG------A-ACA-ATTTATTCTTCCCATAAAT-ATTACTGGGGGCCGC-
gi|92194 : ATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--TTATG-TCAA--TGAGTTGA--ATCA--TATAA-ATTT-TATC--A-TGAA-AC--AAG------A-A-A-ATGT-TTTTC--TATTAA
gi|92195 : ATTT-A-AATCA-TA-AAAAG--T-AA-A-ATT--A--T---GATCAA--TGAGTTGC--ATCA--TAGAA-ATTT-TATC--C-TGAA-AC--AAG------A-A-A----TGTTTTTC-TATTAA
gi|92196 : A-TA-AAA-T--T-A--A-ATGATA--T---G-TTAA--TGAACAGAC-ATCA--TGTAA-ATTC-TAGCCCA-CGAA-AC--GAG------A-A-A-ATTTTATTAT--TATAAAT---TACTGGGGGCCGCATT---GCCCATAGCCATTTCTCT-TCATCCgggcatacggcaatgtcaccatttc
Alignments
lowQualScore : 111111
lowQualScore : 2 2 2 2 2 33 2 2 4 7777 33 333 2 33 55 33 2 2 3 33 55 2 33 666666 2 2 2 1 55 333 1 333333 88 3
lowQualScore : . . . . . .. . . . .... .. ... . .. .. .. . . . .. .. . .. ...... . . . . .. ... . ...... .. .
lowQualScore : 4 4 2 2 2 11 2 2 4 8888 11 999 2 11 33 11 2 2 2 11 33 2 11 444444 2 2 2 5 33 111 5 555555 55 1
consensus : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
Reference ( family-896 ) : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92179 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTTA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92180 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAAA--A-TGAA-AC--AAG------A-A-A-ATTTACTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCC
gi|92181 : ATATAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-GTTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCG-TCATCCTT
gi|92182 : ATGTAGCATTT-A-AATCA-TA-AAT-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCG--TGTAA-ATTT-TAGC--A-TGAA-AT--AAG------A-A-A-AATTA--TTT--TATAAAT-A-TATTGGGGGCGGC-CA---GCATAT-GCCATTTCTCT-TCATCC
gi|92183 : ATGTAGCATTT-AGAATCA-TATAAA-G--T-AC-ACA----A--T---G-TTGACTTGAAGTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-G-ATTTATTTT---TATAAAT-A-TAGTGGGGACCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92184 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TAAACTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AT--AAGGAAAAAA-A-A-A--------T--TATAAAT-A-TATTGGGGGCCGC-CA---ACACAT-GCCATTTATCT-TCATCCTT
gi|92185 : ATGTAACATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---A-TTGA--TGAAGTGA--ATTA--TGTAA-ATTT-T----------A-AC--AAG------A-A-A-A-TTAATTAT--TGTAAAT-A-TATTGGGGGCCGC-C-----TATAT-GCCATTTCTCT-TCATCCTT
gi|92186 : ATGTAACATTGGA-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTC-TAGC--A-CGAA-AC--GAG------A-A-A-ATTTATTTTT--AATAAAT-T-TACT-GGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92187 : ATGTAACATTT-A-AATCA-TG-AAA-G--T-AA-A-A----A--T---A-TTAA--TGAACTCA--ATCA--TATAA-ATTT-TGCC--A-CG-A-AC--ATG------A-A-C-ATTTATTTTT--TATAAAT-A-TACTGGGGG-CGC--G---GCACATAACCATTTCTCT-TCATCCTT
gi|92188 : ATGTAGCATT--A-AATC--TC-AAA-G--T-AC-A-A----A--T-----TTGT--TAAACTGA--ATCA--TGTAA-ATTT-TAA---A-TGAA-AC--AAG------A-A-A-AT---TTTTT--TAT-AAT-A-TAGT-GGGGCCGC-TA---GCACAT-GCC-CTTCTCT-TCATCCTT
gi|92189 : ATATAACCATT-G-AATAAATA-AAA-G--T-AC-A-A----AGAT---G-TTAA--TGAAGTGA--ACCA--TGTAA-ATTC-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--ATTAAAT-A-TACTGGGGGCCG--TATTTGCACA--GCCATTTCTCTATCATCCTT
gi|92190 : ATATAACATTT-A-AATCA-TA-AAA-G--T-ACCA-A----A--T---G-TTGA--TGAACTGA--ATCA--TGT-A-ATTT-AAAG--T-TGAA-ACAGAAG------ACA-ACATTTATTTTT--
gi|92191 : ATATAACATTG-A-AAT-A-TA-AAA-AAAT-AC-ACA----A--T---G-TTAA--TGAAGTGA--ACCA--TGTAATGTCT-TGTC--A--GAATAC--A-G------A-A-A-ATTTATTTTT--C-TAAATAA-TACTGGGGGCCGC-
gi|92192 : TAACATGT-G-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTTCTAGC--A-CGAA-AC--GAG------A-A-A-ATTTA--TTT--TATAAAT-T-TACTGGGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92193 : AACATTG-A-AATCA-TG-AAA-G--TCAC-A-A----A--T---G-TTAA--TTAACAGAACATCACGTGTAA-ATTC-TAGC--AGCGAA-AC--AAG------A-ACA-ATTTATTCTTCCCATAAAT-ATTACTGGGGGCCGC-
gi|92194 : ATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--TTATG-TCAA--TGAGTTGA--ATCA--TATAA-ATTT-TATC--A-TGAA-AC--AAG------A-A-A-ATGT-TTTTC--TATTAA
gi|92195 : ATTT-A-AATCA-TA-AAAAG--T-AA-A-ATT--A--T---GATCAA--TGAGTTGC--ATCA--TAGAA-ATTT-TATC--C-TGAA-AC--AAG------A-A-A----TGTTTTTC-TATTAA
gi|92196 : A-TA-AAA-T--T-A--A-ATGATA--T---G-TTAA--TGAACAGAC-ATCA--TGTAA-ATTC-TAGCCCA-CGAA-AC--GAG------A-A-A-ATTTTATTAT--TATAAAT---TACTGGGGGCCGCATT---GCCCATAGCCATTTCTCT-TCATCCgggcatacggcaatgtcaccatttc
blockSeqs : G G A T A AA C C C TGAT GA TAT A CT AC CG T C A CC GC T AG GAAAAA C C C C CC AA G TATTT TA A
blockSeqs : . . . . . . . . C TT . . . . C . . . A . T . . . . . . T C AT G ATT TA .
blockSeqs : . . . . . . . . . . . . . . . . . . G . T . . . . . . T . A T ATT T .
blockSeqs : . . . . . . . . . . . . . . . . . . A . T . . . . . . A . A G ATT T .
blockSeqs : . . . . . . . . . . . . . . . . . . A . T . . . . . . T . A T TA T .
blockSeqs : . . . . . . . . . . . . . . . . . . G . T . . . . . . T . A T TA T .
blockSeqs : . . . . . . . . . . . . . . . . . . C . C . . . . . . T . A C CA T .
blockSeqs : . . . . . . . . . . . . . . . . . . A . C . . . . . . T . A C TA T .
blockSeqs : . . . . . . . . . . . . . . . . . . G . T . . . . . . T . T G CA T .
blockSeqs : . . . . . . . . . . . . . . . . . . A . C . . . . . . T . A C TA . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . T . . . . . . T . A C C . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . C . . . . . . T . A C G . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . T . . . . . . T . T C
blockSeqs : . . . . . . . . . . . . . . . . . . T . T . . . . . . A . . C
blockSeqs : . . . . . . . . . . . . . . . . . . T . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
finalCons : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
Alignments
lowQualScore : 111111
lowQualScore : 2 2 2 2 2 33 2 2 4 7777 33 333 2 33 55 33 2 2 3 33 55 2 33 666666 2 2 2 1 55 333 1 333333 88 3
lowQualScore : . . . . . .. . . . .... .. ... . .. .. .. . . . .. .. . .. ...... . . . . .. ... . ...... .. .
lowQualScore : 4 4 2 2 2 11 2 2 4 8888 11 999 2 11 33 11 2 2 2 11 33 2 11 444444 2 2 2 5 33 111 5 555555 55 1
consensus : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
Reference ( family-896 ) : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TACTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92179 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTTA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92180 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-ATTT-TAAA--A-TGAA-AC--AAG------A-A-A-ATTTACTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCT-TCATCC
gi|92181 : ATATAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCA--TGTAA-GTTT-TAAC--A-TGAA-AC--AAG------A-A-A-ATTTATTTTT--TATAAAT-A-TAGTGGGGGCCGC-TA---GCATAT-GCCATTTCTCG-TCATCCTT
gi|92182 : ATGTAGCATTT-A-AATCA-TA-AAT-G--T-AC-A-A----A--T---G-TTGA--TGAACTGA--ATCG--TGTAA-ATTT-TAGC--A-TGAA-AT--AAG------A-A-A-AATTA--TTT--TATAAAT-A-TATTGGGGGCGGC-CA---GCATAT-GCCATTTCTCT-TCATCC
gi|92183 : ATGTAGCATTT-AGAATCA-TATAAA-G--T-AC-ACA----A--T---G-TTGACTTGAAGTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AC--AAG------A-A-G-ATTTATTTT---TATAAAT-A-TAGTGGGGACCGC-TA---GCATAT-GCCATTTCTCT-TCATCCTT
gi|92184 : ATGTAGCATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---G-TTGA--TAAACTGA--ATCA--TGTAA-ATTT-TAAC--A-TGAA-AT--AAGGAAAAAA-A-A-A--------T--TATAAAT-A-TATTGGGGGCCGC-CA---ACACAT-GCCATTTATCT-TCATCCTT
gi|92185 : ATGTAACATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--T---A-TTGA--TGAAGTGA--ATTA--TGTAA-ATTT-T----------A-AC--AAG------A-A-A-A-TTAATTAT--TGTAAAT-A-TATTGGGGGCCGC-C-----TATAT-GCCATTTCTCT-TCATCCTT
gi|92186 : ATGTAACATTGGA-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTC-TAGC--A-CGAA-AC--GAG------A-A-A-ATTTATTTTT--AATAAAT-T-TACT-GGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92187 : ATGTAACATTT-A-AATCA-TG-AAA-G--T-AA-A-A----A--T---A-TTAA--TGAACTCA--ATCA--TATAA-ATTT-TGCC--A-CG-A-AC--ATG------A-A-C-ATTTATTTTT--TATAAAT-A-TACTGGGGG-CGC--G---GCACATAACCATTTCTCT-TCATCCTT
gi|92188 : ATGTAGCATT--A-AATC--TC-AAA-G--T-AC-A-A----A--T-----TTGT--TAAACTGA--ATCA--TGTAA-ATTT-TAA---A-TGAA-AC--AAG------A-A-A-AT---TTTTT--TAT-AAT-A-TAGT-GGGGCCGC-TA---GCACAT-GCC-CTTCTCT-TCATCCTT
gi|92189 : ATATAACCATT-G-AATAAATA-AAA-G--T-AC-A-A----AGAT---G-TTAA--TGAAGTGA--ACCA--TGTAA-ATTC-TAGC--A-CGAA-AC--AAG------A-A-A-ATTTATTTTT--ATTAAAT-A-TACTGGGGGCCG--TATTTGCACA--GCCATTTCTCTATCATCCTT
gi|92190 : ATATAACATTT-A-AATCA-TA-AAA-G--T-ACCA-A----A--T---G-TTGA--TGAACTGA--ATCA--TGT-A-ATTT-AAAG--T-TGAA-ACAGAAG------ACA-ACATTTATTTTT--
gi|92191 : ATATAACATTG-A-AAT-A-TA-AAA-AAAT-AC-ACA----A--T---G-TTAA--TGAAGTGA--ACCA--TGTAATGTCT-TGTC--A--GAATAC--A-G------A-A-A-ATTTATTTTT--C-TAAATAA-TACTGGGGGCCGC-
gi|92192 : TAACATGT-G-AATCA-TG-AAA-G--T-AC-A-A----A--T---G-TTAA--TGAACAGA--ATCA--TGTAA-ATTTCTAGC--A-CGAA-AC--GAG------A-A-A-ATTTA--TTT--TATAAAT-T-TACTGGGGGCCGCATT---GCATA--GCCATTTTTCT-TCATCC
gi|92193 : AACATTG-A-AATCA-TG-AAA-G--TCAC-A-A----A--T---G-TTAA--TTAACAGAACATCACGTGTAA-ATTC-TAGC--AGCGAA-AC--AAG------A-ACA-ATTTATTCTTCCCATAAAT-ATTACTGGGGGCCGC-
gi|92194 : ATTT-A-AATCA-TA-AAA-G--T-AC-A-A----A--TTATG-TCAA--TGAGTTGA--ATCA--TATAA-ATTT-TATC--A-TGAA-AC--AAG------A-A-A-ATGT-TTTTC--TATTAA
gi|92195 : ATTT-A-AATCA-TA-AAAAG--T-AA-A-ATT--A--T---GATCAA--TGAGTTGC--ATCA--TAGAA-ATTT-TATC--C-TGAA-AC--AAG------A-A-A----TGTTTTTC-TATTAA
gi|92196 : A-TA-AAA-T--T-A--A-ATGATA--T---G-TTAA--TGAACAGAC-ATCA--TGTAA-ATTC-TAGCCCA-CGAA-AC--GAG------A-A-A-ATTTTATTAT--TATAAAT---TACTGGGGGCCGCATT---GCCCATAGCCATTTCTCT-TCATCCgggcatacggcaatgtcaccatttc