lowQualScore : 11 11111 11111
lowQualScore : 44 2 2 2 88888 7 33 7 7777777 55555 0 6 2
lowQualScore : .. . . . ..... . .. . ....... ..... . . .
lowQualScore : 33 7 5 4 77777 1 22 7 6666666 11111 2 2 8
consensus : TTTACNAAGGGCAGA-TAAC-TCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGTCGGC-------TTCTAATCATTTACCA--GTCATGTGAATNTAAA
Reference ( gi|25112 ) : TTTATGAAGGGCAGA-TAAC-TCTTC-AAAAATG---TCT--CAAGTGCAAAAAGATCGGC-------TTCTAACCATTTATCG--GTCATGTGAATTTGAA
gi|25110 : TTTACAAAGGGCGGA-TAAC-TCTTC-AAAAACG---TTT--CAAGTCCAGAAAGGTCAGC-------TTCTCATCATCTATTA--GTCA
gi|25114 : tatgTTTACAAAGGACAGA-TAAC-TCTTC-AAAAA-G---TTT--CAAGTGCAAAATG-TCGAC-------TTCTAACCAATTACTG--GTC
gi|25116 : TTTATCAAGGGCAGA-CAAC-TCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGATCAGC-------TTCTAATCACT----A--GTCATGTGAATTTA
gi|25117 : TTTACAAAGGGCAGA-TAAC-TCTTG-AAAAA-G---TTT--CAAGC-CAAAAAGGTTGGC-------TTGTCATTATCTACCA--GTCATGTGAAT
gi|25107 : TTTACCAAGGCCAGA-AAAC-GCTTT-AAAAAGG---TTT--CAAGTGCAAAAGGTTCAGC-------TTCTAACCATTTACCT--GTCAAGAGAATATAAA
gi|25119 : tgtgTTTACAAAGGGCAGA-TAGC-TCTTC-AAAAAAAAA-TTT--CAAGTCCAAAAAGGTTGGC-------TTATCATTACCTACCA--GTCATGTGAAT
gi|25115 : TTTATCAAGGGCAGAACAAC-TCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGATCAGC-------TTCTAATCACT----A--GTCATGTGAATTTAAA
gi|25108 : TTTACCAAGGCCAGA-AAAC-GCTTT-AAAAAGG---CTT--CAAGTGCAAAAGGTTCAGC-------TTCTAACCATTTACCT--GTCAAGAGAATATAAA
gi|25111 : tgtgTTTAAAAAGGGCATA-TAAC-TCTTCCAAAAACC---TTT--CAAGTGCATTAAAGTCGGC-------TTCTAATCATTTACCA--GTC
gi|25113 : taTTTACGAAGGGCAGA-TAAC-GCTTC-AAAAAAAAACCTT--CAAGTGCAAAAAGGTTAGC-------TTCTAACCATGTACC
gi|25120 : TTTAAAAAGGGCAGA-TAACTTCTTG-AAAAA-G---TTT--CAAGCCAAAAAAGATCGGC-------TTATCATTATCTA-CGCTGTCATGTGAAT
gi|25118 : TTTACCAGGGGTAGA-CAAC-TCCTC-CAAAAAG---TCT--CTAGTGCAAAAAGATTGTC-------CTTAAATCATTTACCT--TTCATG-GAAT
gi|25109 : TTTACCAAGGCCAGA-AAAC-GCTTT-AAAAAGG---T-T--CAAGTGCAAG--GTTCAGC-------TTCTAACCATTTACCT--GTCA
gi|25121 : tgtgAAGAGCAGA-TAAC-TCTTC-AAAA-CG---TTT--CAAGTGCCAAAGGTTCGGC-------TTCTAACCATTTAACA--GTCGTGTGAATGTGaggagaatataaa
gi|25122 : AAGGGCAGA-TAAC-TTTTA-ATAAACG---TTT--CAAGTGCAAAAAGGTTGGC-------TTCTAATCATCCACC
gi|25123 : AAC-TCTTC-AAAATAG---TTT--CACATGCAAAAAGTTCGGCTTCTAAGTTCTAACCATTTACGA--GTCATGTGAAT
gi|25124 : CCTC-AAAAAGG---TTTTGCAAGTGCCAAAAGGTTGGC-------TTGTAATCATTTACCA--GTCATGTGAAT
Alignments
lowQualScore : 1 2 2 5 666 33 1 2 7777777 2 1 2 0 1
lowQualScore : . . . . ... .. . . ....... . . . . .
lowQualScore : 0 5 2 3 999 11 8 2 2222222 2 0 5 8 0
consensus : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
Reference ( family-895 ) : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAATCATTTAC-CAGTC-ATGTGAATNTAAA
gi|25107 : TTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25108 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---CTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25109 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TT---CAAGTGCAA---GGTTCAGC-------TTCTAACCATTTAC-CTGTCAAGGAGAATATAAA
gi|25110 : tgtgTTTACAAAGGGCGGA-TAACTCTTC-AAAAACG---TTT--CAAGTCCAGAAAGGT-CAGC-------TTCTCATCATCTAT-TAGTC-A
gi|25111 : tatgTTTAAAAAGGGCATA-TAACTCTTCCAAAAACC---TTT--CAAGTGCATTAAAGT-CGGC-------TTCTAATCATTTAC-CAGTC-
gi|25112 : taTTTATGAAGGGCAGA-TAACTCTTC-AAAAATG---TCT--CAAGTGCAAAAAGAT-CGGC-------TTCTAACCATTTAT-CGGTC-ATGTGAATTTGAA
gi|25113 : TTTACGAAGGGCAGA-TAACGCTTC-AAAAAAAAACCTT--CAAGTGCAAAAAGGT-TAGC-------TTCTAACCATGTAC-C
gi|25114 : TTTACAAAGGACAGA-TAACTCTTC-AAAAA-G---TTT--CAAGTGC-AAAATGT-CGAC-------TTCTAACCAATTAC-TGGTC-
gi|25115 : TTTATCAAGGGCAGAACAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAAA
gi|25116 : TTTATCAAGGGCAGA-CAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAA
gi|25117 : TTTACAAAGGGCAGA-TAACTCTTG-AAAAA-G---TTT--CAAGC-CAAAAAGGT-TGGC-------TTGTCATTATCTAC-CAGTC-ATGTGAAT
gi|25118 : TTTACCAGGGGTAGA-CAACTCCTC-CAAAAAG---TCT--CTAGTGCAAAAAGAT-TGTC-------CTTAAATCATTTAC-CTTTC-ATG-GAAT
gi|25119 : TTTACAAAGGGCAGA-TAGCTCTTC-AAAAAAAAA-TTT--CAAGTCCAAAAAGGT-TGGC-------TTATCATTACCTAC-CAGTC-ATGTGAAT
gi|25120 : TTTAAAAAGGGCAGA-TAACTTCTT-GAAAAAG---TTT--CAAGCCAAAAAAGAT-CGGC-------TTATCATTATCTACGCTGTC-ATGTGAAT
gi|25121 : AAGAGCAGA-TAACTCTTC-AAAA-CG---TTT--CAAGTGCCAAAGGTT-CGGC-------TTCTAACCATTTAA-CAGTC-GTGTGAATGTGA
gi|25122 : AAGGGCAGA-TAACTTTTA-ATAAACG---TTT--CAAGTGCAAAAAGGT-TGGC-------TTCTAATCATCCAC-C
gi|25123 : AACTCTTC-AAAATAG---TTT--CACATGCAAAAAGTT-CGGCTTCTAAGTTCTAACCATTTAC-GAGTC-ATGTGAAT
gi|25124 : CCTC-AAAAAGG---TTTTGCAAGTGCCAAAAGGT-TGGC-------TTGTAATCATTTAC-CAGTC-ATGTGAAT
Alignments
lowQualScore : 1 2 2 5 666 33 1 2 7777777 2 1 2 0 1
lowQualScore : . . . . ... .. . . ....... . . . . .
lowQualScore : 0 5 2 3 999 11 8 2 2222222 2 0 5 8 0
consensus : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
Reference ( family-895 ) : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
gi|25107 : TTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25108 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---CTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25109 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TT---CAAGTGCAA---GGTTCAGC-------TTCTAACCATTTAC-CTGTCAAGGAGAATATAAA
gi|25110 : tgtgTTTACAAAGGGCGGA-TAACTCTTC-AAAAACG---TTT--CAAGTCCAGAAAGGT-CAGC-------TTCTCATCATCTAT-TAGTC-A
gi|25111 : tatgTTTAAAAAGGGCATA-TAACTCTTCCAAAAACC---TTT--CAAGTGCATTAAAGT-CGGC-------TTCTAATCATTTAC-CAGTC-
gi|25112 : taTTTATGAAGGGCAGA-TAACTCTTC-AAAAATG---TCT--CAAGTGCAAAAAGAT-CGGC-------TTCTAACCATTTAT-CGGTC-ATGTGAATTTGAA
gi|25113 : TTTACGAAGGGCAGA-TAACGCTTC-AAAAAAAAACCTT--CAAGTGCAAAAAGGT-TAGC-------TTCTAACCATGTAC-C
gi|25114 : TTTACAAAGGACAGA-TAACTCTTC-AAAAA-G---TTT--CAAGTGC-AAAATGT-CGAC-------TTCTAACCAATTAC-TGGTC-
gi|25115 : TTTATCAAGGGCAGAACAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAAA
gi|25116 : TTTATCAAGGGCAGA-CAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAA
gi|25117 : TTTACAAAGGGCAGA-TAACTCTTG-AAAAA-G---TTT--CAAGC-CAAAAAGGT-TGGC-------TTGTCATTATCTAC-CAGTC-ATGTGAAT
gi|25118 : TTTACCAGGGGTAGA-CAACTCCTC-CAAAAAG---TCT--CTAGTGCAAAAAGAT-TGTC-------CTTAAATCATTTAC-CTTTC-ATG-GAAT
gi|25119 : TTTACAAAGGGCAGA-TAGCTCTTC-AAAAAAAAA-TTT--CAAGTCCAAAAAGGT-TGGC-------TTATCATTACCTAC-CAGTC-ATGTGAAT
gi|25120 : TTTAAAAAGGGCAGA-TAACTTCTT-GAAAAAG---TTT--CAAGCCAAAAAAGAT-CGGC-------TTATCATTATCTACGCTGTC-ATGTGAAT
gi|25121 : AAGAGCAGA-TAACTCTTC-AAAA-CG---TTT--CAAGTGCCAAAGGTT-CGGC-------TTCTAACCATTTAA-CAGTC-GTGTGAATGTGA
gi|25122 : AAGGGCAGA-TAACTTTTA-ATAAACG---TTT--CAAGTGCAAAAAGGT-TGGC-------TTCTAATCATCCAC-C
gi|25123 : AACTCTTC-AAAATAG---TTT--CACATGCAAAAAGTT-CGGCTTCTAAGTTCTAACCATTTAC-GAGTC-ATGTGAAT
gi|25124 : CCTC-AAAAAGG---TTTTGCAAGTGCCAAAAGGT-TGGC-------TTGTAATCATTTAC-CAGTC-ATGTGAAT
blockSeqs : C A C G AAC TG A T TTCTAAG G T A A
blockSeqs : C . . G AA . A . . . T . A
blockSeqs : A . . C . . A . . . A . T
blockSeqs : A . . C . . A . . . A . T
blockSeqs : G . . T . . A . . . G . T
blockSeqs : G . . A . . A . . . G . G
blockSeqs : A . . A . . A . . . A .
blockSeqs : C . . A . . A . . . A .
blockSeqs : C . . A . . A . . . A .
blockSeqs : A . . A . . A . . . T .
blockSeqs : C . . A . . C . . . A .
blockSeqs : A . . C . . A . . . T .
blockSeqs : A . . C . . A . . . A .
blockSeqs : . . A . . C . . . A .
blockSeqs : . . G . . . . . . A .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
finalCons : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
Alignments
lowQualScore : 1 2 2 5 666 33 1 2 7777777 2 1 2 0 1
lowQualScore : . . . . ... .. . . ....... . . . . .
lowQualScore : 0 5 2 3 999 11 8 2 2222222 2 0 5 8 0
consensus : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
Reference ( family-895 ) : TTTACNAAGGGCAGA-TAACTCTTC-AAAAANG---TTT--CAAGTGCAAAAAGGT-CGGC-------TTCTAACCATTTAC-CAGTC-ATGTGAATNTAAA
gi|25107 : TTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25108 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---CTT--CAAGTGCAAAAGGTT-CAGC-------TTCTAACCATTTAC-CTGTC-AAGAGAATATAAA
gi|25109 : tgtgTTTACCAAGGCCAGA-AAACGCTTT-AAAAAGG---TT---CAAGTGCAA---GGTTCAGC-------TTCTAACCATTTAC-CTGTCAAGGAGAATATAAA
gi|25110 : tgtgTTTACAAAGGGCGGA-TAACTCTTC-AAAAACG---TTT--CAAGTCCAGAAAGGT-CAGC-------TTCTCATCATCTAT-TAGTC-A
gi|25111 : tatgTTTAAAAAGGGCATA-TAACTCTTCCAAAAACC---TTT--CAAGTGCATTAAAGT-CGGC-------TTCTAATCATTTAC-CAGTC-
gi|25112 : taTTTATGAAGGGCAGA-TAACTCTTC-AAAAATG---TCT--CAAGTGCAAAAAGAT-CGGC-------TTCTAACCATTTAT-CGGTC-ATGTGAATTTGAA
gi|25113 : TTTACGAAGGGCAGA-TAACGCTTC-AAAAAAAAACCTT--CAAGTGCAAAAAGGT-TAGC-------TTCTAACCATGTAC-C
gi|25114 : TTTACAAAGGACAGA-TAACTCTTC-AAAAA-G---TTT--CAAGTGC-AAAATGT-CGAC-------TTCTAACCAATTAC-TGGTC-
gi|25115 : TTTATCAAGGGCAGAACAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAAA
gi|25116 : TTTATCAAGGGCAGA-CAACTCTTC-CAAAAAG---TTC--CAAGTGC-AGTAGAT-CAGC-------TTCTAATC----AC-TAGTC-ATGTGAATTTAA
gi|25117 : TTTACAAAGGGCAGA-TAACTCTTG-AAAAA-G---TTT--CAAGC-CAAAAAGGT-TGGC-------TTGTCATTATCTAC-CAGTC-ATGTGAAT
gi|25118 : TTTACCAGGGGTAGA-CAACTCCTC-CAAAAAG---TCT--CTAGTGCAAAAAGAT-TGTC-------CTTAAATCATTTAC-CTTTC-ATG-GAAT
gi|25119 : TTTACAAAGGGCAGA-TAGCTCTTC-AAAAAAAAA-TTT--CAAGTCCAAAAAGGT-TGGC-------TTATCATTACCTAC-CAGTC-ATGTGAAT
gi|25120 : TTTAAAAAGGGCAGA-TAACTTCTT-GAAAAAG---TTT--CAAGCCAAAAAAGAT-CGGC-------TTATCATTATCTACGCTGTC-ATGTGAAT
gi|25121 : AAGAGCAGA-TAACTCTTC-AAAA-CG---TTT--CAAGTGCCAAAGGTT-CGGC-------TTCTAACCATTTAA-CAGTC-GTGTGAATGTGA
gi|25122 : AAGGGCAGA-TAACTTTTA-ATAAACG---TTT--CAAGTGCAAAAAGGT-TGGC-------TTCTAATCATCCAC-C
gi|25123 : AACTCTTC-AAAATAG---TTT--CACATGCAAAAAGTT-CGGCTTCTAAGTTCTAACCATTTAC-GAGTC-ATGTGAAT
gi|25124 : CCTC-AAAAAGG---TTTTGCAAGTGCCAAAAGGT-TGGC-------TTGTAATCATTTAC-CAGTC-ATGTGAAT