lowQualScore : 3 2 2 88 1 1 1 77 1 1 5 8 3 2 3 44 6666 3 3 9999 44 3
lowQualScore : . . . .. . . . .. . . . . . . . .. .... . . .... .. .
lowQualScore : 1 4 2 33 7 7 7 11 7 6 3 3 6 0 1 22 5555 1 1 6666 66 3
consensus : CAGTAA-GATCA-CG-TGAC-CTATATTACC-T-GT-CT-CAG-GCA-GGTAATAT-GGT-CTCGTAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Reference ( gi|121873 ) : CAGTAA-GATCA-CG-TGAT-CTATATTACC-T-GT-CT-CAG-GCA-GGTGATAT-GGT-CTCATAA-TAACGGCTAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121872 : CAGTAA-GATCA-CG-TGAC-CTATATTACC-T-GT-GT-CAG-GCA-GGTAATAT-GGT-CTCATGA-TAACGGCAAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121875 : CAGTAA-GATCA-CG-TGAC-TTATATTACC-T-GT-CT-CAG-GCA-GGTAATAT-AGT-CTCATAA-TAACGGCGAATGAA--CCAAT----C-ATATCTCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121874 : CAGTAA-GATCA-CG-TGAC-CTATATTACC-T-GT-CT-CAG-GCA-GGTAATAT-GCT-CTCATAA-TAACGGCAAATGAA--GCAATCATGC-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121877 : CAGTAA-GATCA-CG-TGAT-CTATATTACC-T-GT-CT-CAG-GCA-AGTAATAT-GGT-ATCATAA-TAACGGCTAATGGA--CCAAC----G-GAATTCCTAG-AA----TTTAATTT--GCAGT-ATTACAAA
gi|121876 : CAGAAA-GATCA-CG-TGAC-CTATATCACC-T-GT-AT-CAG-GCA-GGTAATAT-AGT-CTCATAA-TAACGGCAAATTAA--CTAAT----C-AAATTCCTAC-AA----TCTAATTT--GCAAT-ATGACAAA
gi|121879 : CAGTAA-GATCA-CGCTGAT-CTATAATACC-TTGTTCT-CAG--CA-GGTAATAT-AGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AAAATTTCTAATTT--GCAGT-ATGACAAA
gi|121878 : CAGTAAAGATCA-CG-TGA--CTATATTACC-T-GT-CTTCAG-GCA-GGTAATAT-AGTTCTCATAAATAACGGCAAATGAAAACCAAT----CCAAATTTCTAG-AA----TCTGATTT--GCAGT-ATGACAA
gi|121880 : CAGTAA-GATCA-AG-TGAC-TTATATTACT-T-GT-CT-CAG-ACA-GGAAATAT-GGT-CTGATAA-TAACGGCAAAT
gi|121881 : CAGTAA--ATCT-AT-TGAT-CTATAATACTAT-GT-CG-CCG-GCA---TAATAT-ATT-CTAA-AA-TAATGGCTACTGAT--CCAAT----C-ACATTCCTAG-AAC---TCTAATTTTGGCAGTCATGACAAA
gi|121882 : CAGTAA-TATCA-CG-TGAT-CTATAATA-C-T-GT-CT-CAG-GCAGGGTAATAT-AGT-
gi|121884 : CAGTAA-GATCA-CG-TGAT-CTATATTACC-T-GT-CTGCAA-AGA-GGTggtaaaaggcaagattaacgaacagtgttcaatctcgcaagtctaat
gi|121883 : CAGTAA-GATCA-CG-TGAC-CTATATTACC-G-GT-CT-----GCA-TGTAAACT-GGT-
gi|121885 : GTAA-GATCAACG-TGAT-CTATAATACC-T-GT-CT-CAG-GCA-GGTAATAT-AGT-CT-ATAA-TAACGGCTAATGAA--ACAAT----C-AAATTCCTAG-AA----ACAAAT
gi|121872 : ATCA-TG-AGAC-C-ATATTACC-T-GC-CT-GAC-ACA-GGTAATATAGGT-CACGTGA-T
gi|121875 : cagtaagATTA-TG-AGA--CTATATTACC-T-GC-CT-GAG-ACA-GGTAATATAAGT-CACGTGA-Taacggcaaatgaaccaatcaaattcctagaatctaatttgcagtatgacaaa
gi|121876 : cagtaagATTA-TG-AGA--CTATATTACC-T-GC-CT-GAT-ACA-GGTGATATAGGT-CACGTGA-Taacggcgaatgaaccaatcatatctctagaatctaatttgcagtatgacaaa
gi|121886 : cagaaagA-CG-T--C-CTATATTAAC-T-GT-CTGCAG-GCA-GGTAA-----------------AATGGCTAATAAA--CCAAT----C-AAATTTCTAGAAA----TCTAATTT--GCAAT-ATGACAaacggcaaattaactaatcaaattcctacaatctaatttgcaatatgacaaa
gi|121877 : -TGATACCATATTACT-T-GC-CT-GAG-ACA-GGTAATATAGAT-CACGTGA-T
gi|121878 : cagtaagGAA-CTATATTACC-T-GC-CTGAAG-ACA-GGTAATAT-AGT-CACGTGA-Ttaataacggctaatggaccaacggaattcctagaatttaatttgcagtattacaaa
gi|121885 : cagtaaag-CTATATTACC-T-GC-CT-GAG-ACA-GGTATTAT-AGtcataaataacggcaaatgaaaaccaatccaaatttctagaatctgatttgcagtatgacaa
gi|121880 : gtaagatcaacgtgat-CCATATTTCC-T-GT-CT-GAG-ACA-AGTAATAT-tctataataacggctaatgaaacaatcaaattcctagaaacaaat
gi|121874 : cagtaagatcaagtgacttATATTACC-T-GC-CT-GAG-ACA-GGTAATATAGGT-CACGTGA-Ttctgataataacggcaaat
gi|121887 : cagtaagTATTACA---GC-TT-CAG-GCA-GGTAATAT-AGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAAgctctcataataacggcaaatgaagcaatcatgcaaattcctagaatctaatttgcagtatgacaaa
gi|121888 : -CAGAGCA-GGTAATAT-GGT-CTCATAA-TAACTGCCAATGAA--GCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAAT-ATAACAAA
gi|121889 : CA-GGTAAGAC-GGAACTCATAA-TAACGGCTAATGAA--CC-AT----C-ACATTCC-AA-AA----TCTAATTC--GCA-T-ATGACAAA
Alignments
lowQualScore : 2 2 2 2 2 2 7 2 2 4 5 2 1 2 33 777777 5555 2 2 8888 44 3
lowQualScore : . . . . . . . . . . . . . . .. ...... .... . . .... .. .
lowQualScore : 9 7 7 5 5 5 1 4 2 7 6 5 0 5 77 777777 7777 7 7 3333 22 1
consensus : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNA-ATGAA--CCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Reference ( family-894 ) : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCGTAA-TAACGGCNA-ATGAA--CCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121872 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-GT-CAG-GCA-GGTAATATGGT-CTCATGA-TAACGGCAA-ATGAA--CCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121873 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-GGTGATATGGT-CTCATAA-TAACGGCTA-ATGAA--CCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121874 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGCT-CTCATAA-TAACGGCAA-ATGAA--GCAA------TCATGC-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121875 : CAGTAA-GATCA-CG-TGACTTATATTACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCGA-ATGAA--CCAA------T----C-ATATCTCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121876 : CAGAAA-GATCA-CG-TGACCTATATCACC-T-GT-AT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCAA-ATTAA--CTAA------T----C-AAATTCCTAC-AA----TCTAATTT--GCAAT-ATGACAAA
gi|121877 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-AGTAATATGGT-ATCATAA-TAACGGCTA-ATGGA--CCAA------C----G-GAATTCCTAG-AA----TTTAATTT--GCAGT-ATTACAAA
gi|121878 : CAGTAAAGATCA-CG-TGAC-TATATTACC-T-GT-CTTCAG-GCA-GGTAATATAGTTCTCATAAATAACGGCAA-ATGAAAACCAA------T----CCAAATTTCTAG-AA----TCTGATTT--GCAGT-ATGACAA
gi|121879 : CAGTAA-GATCA-CGCTGATCTATAATACC-TTGTTCT-CAG--CA-GGTAATATAGT-CTCATAA-TAACGGCTA-ACGAA--CCAA------T----C-AAATTCCTAG-AAAATTTCTAATTT--GCAGT-ATGACAAA
gi|121880 : CAGTAA-GATCA-AG-TGACTTATATTACT-T-GT-CT-CAG-ACA-GGAAATATGGT-CTGATAA-TAACGGCAA-AT
gi|121881 : CAGTAA--ATCT-AT-TGATCTATAATACTAT-GT-CG-CCG-GCA---TAATATATT-CTAA-AA-TAATGGCTA-CTGAT--CCAA------T----C-ACATTCCTAG-AAC---TCTAATTTTGGCAGTCATGACAAA
gi|121882 : CAGTAA-TATCA-CG-TGATCTATAATA-C-T-GT-CT-CAG-GCAGGGTAATATAG---TGGTAA--AA-GGCAAGATTAA--CGAACAGTGTT----C-AATCTCGCA--AG----TCTAAT
gi|121883 : CAGTAA-GATCA-CG-TGACCTATATTACC-G-GT-CT-----GCA-TGTAAACTGGT-
gi|121884 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CTGCAA-AGA-GGT
gi|121885 : GTAA-GATCAACG-TGATCTATAATACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CT-ATAA-TAACGGCTA-ATGAA--ACAA------T----C-AAATTCCTAG-AA----ACAAAT
gi|121886 : A-CG-T--CCTATATTAAC-T-GT-CTGCAG-GCA-GGTAA----------------AATGGCTA-ATAAA--CCAA------T----C-AAATTTCTAGAAA----TCTAATTT--GCAAT-ATGACA
gi|121887 : TATTACA---GC-TT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCTA-ACGAA--CCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121888 : -CAGAGCA-GGTAATATGGT-CTCATAA-TAACTGCCA-ATGAA--GCAA------T----C-AAATTCCTAG-AA----TCTAATTT--GCAAT-ATAACAAA
gi|121889 : CA-GGTAAGACGGAACTCATAA-TAACGGCTA-ATGAA--CC-A------T----C-ACATTCC-AA-AA----TCTAATTC--GCA-T-ATGACAAA
Alignments
lowQualScore : 2 2 2 2 2 2 7 2 2 4 2 1 33 6666 2 2 8888 44 3
lowQualScore : . . . . . . . . . . . . .. .... . . .... .. .
lowQualScore : 9 7 7 5 5 5 1 4 2 7 7 0 99 1111 9 9 9999 22 1
consensus : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Reference ( family-894 ) : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121872 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-GT-CAG-GCA-GGTAATATGGT-CTCATGA-TAACGGCAAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121873 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-GGTGATATGGT-CTCATAA-TAACGGCTAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121874 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGCT-CTCATAA-TAACGGCAAATGAA--GCAATCATGC-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121875 : CAGTAA-GATCA-CG-TGACTTATATTACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCGAATGAA--CCAAT----C-ATATCTCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121876 : CAGAAA-GATCA-CG-TGACCTATATCACC-T-GT-AT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCAAATTAA--CTAAT----C-AAATTCCTAC-AA----TCTAATTT--GCAAT-ATGACAAA
gi|121877 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-AGTAATATGGT-ATCATAA-TAACGGCTAATGGA--CCAAC----G-GAATTCCTAG-AA----TTTAATTT--GCAGT-ATTACAAA
gi|121878 : CAGTAAAGATCA-CG-TGAC-TATATTACC-T-GT-CTTCAG-GCA-GGTAATATAGTTCTCATAAATAACGGCAAATGAAAACCAAT----CCAAATTTCTAG-AA----TCTGATTT--GCAGT-ATGACAA
gi|121879 : CAGTAA-GATCA-CGCTGATCTATAATACC-TTGTTCT-CAG--CA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AAAATTTCTAATTT--GCAGT-ATGACAAA
gi|121880 : CAGTAA-GATCA-AG-TGACTTATATTACT-T-GT-CT-CAG-ACA-GGAAATATGGT-CTGATAA-TAACGGCAAAT
gi|121881 : CAGTAA--ATCT-AT-TGATCTATAATACTAT-GT-CG-CCG-GCA---TAATATATT-CTAA-AA-TAATGGCTACTGAT--CCAAT----C-ACATTCCTAG-AAC---TCTAATTTTGGCAGTCATGACAAA
gi|121882 : CAGTAA-TATCA-CG-TGATCTATAATA-C-T-GT-CT-CAG-GCAGGGTAATATAGT-
gi|121883 : CAGTAA-GATCA-CG-TGACCTATATTACC-G-GT-CT-----GCA-TGTAAACTGGT-ggtaaaaggcaagattaacgaacagtgttcaatctcgcaagtctaat
gi|121884 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CTGCAA-AGA-GGT
gi|121885 : GTAA-GATCAACG-TGATCTATAATACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CT-ATAA-TAACGGCTAATGAA--ACAAT----C-AAATTCCTAG-AA----ACAAAT
gi|121886 : A-CG-T--CCTATATTAAC-T-GT-CTGCAG-GCA-GGTAA----------------AATGGCTAATAAA--CCAAT----C-AAATTTCTAGAAA----TCTAATTT--GCAAT-ATGACA
gi|121887 : TATTACA---GC-TT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121888 : -CAGAGCA-GGTAATATGGT-CTCATAA-TAACTGCCAATGAA--GCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAAT-ATAACAAA
gi|121889 : CA-GGTAAGACGGAACTCATAA-TAACGGCTAATGAA--CC-AT----C-ACATTCC-AA-AA----TCTAATTC--GCA-T-ATGACAAA
Alignments
lowQualScore : 2 2 2 2 2 2 7 2 2 4 2 1 33 6666 2 2 8888 44 3
lowQualScore : . . . . . . . . . . . . .. .... . . .... .. .
lowQualScore : 9 7 7 5 5 5 1 4 2 7 7 0 99 1111 9 9 9999 22 1
consensus : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Reference ( family-894 ) : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121872 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-GT-CAG-GCA-GGTAATATGGT-CTCATGA-TAACGGCAAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121873 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-GGTGATATGGT-CTCATAA-TAACGGCTAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121874 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGCT-CTCATAA-TAACGGCAAATGAA--GCAATCATGC-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121875 : CAGTAA-GATCA-CG-TGACTTATATTACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCGAATGAA--CCAAT----C-ATATCTCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121876 : CAGAAA-GATCA-CG-TGACCTATATCACC-T-GT-AT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCAAATTAA--CTAAT----C-AAATTCCTAC-AA----TCTAATTT--GCAAT-ATGACAAA
gi|121877 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-AGTAATATGGT-ATCATAA-TAACGGCTAATGGA--CCAAC----G-GAATTCCTAG-AA----TTTAATTT--GCAGT-ATTACAAA
gi|121878 : CAGTAAAGATCA-CG-TGAC-TATATTACC-T-GT-CTTCAG-GCA-GGTAATATAGTTCTCATAAATAACGGCAAATGAAAACCAAT----CCAAATTTCTAG-AA----TCTGATTT--GCAGT-ATGACAA
gi|121879 : CAGTAA-GATCA-CGCTGATCTATAATACC-TTGTTCT-CAG--CA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AAAATTTCTAATTT--GCAGT-ATGACAAA
gi|121880 : CAGTAA-GATCA-AG-TGACTTATATTACT-T-GT-CT-CAG-ACA-GGAAATATGGT-CTGATAA-TAACGGCAAAT
gi|121881 : CAGTAA--ATCT-AT-TGATCTATAATACTAT-GT-CG-CCG-GCA---TAATATATT-CTAA-AA-TAATGGCTACTGAT--CCAAT----C-ACATTCCTAG-AAC---TCTAATTTTGGCAGTCATGACAAA
gi|121882 : CAGTAA-TATCA-CG-TGATCTATAATA-C-T-GT-CT-CAG-GCAGGGTAATATAGT-
gi|121883 : CAGTAA-GATCA-CG-TGACCTATATTACC-G-GT-CT-----GCA-TGTAAACTGGT-ggtaaaaggcaagattaacgaacagtgttcaatctcgcaagtctaat
gi|121884 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CTGCAA-AGA-GGT
gi|121885 : GTAA-GATCAACG-TGATCTATAATACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CT-ATAA-TAACGGCTAATGAA--ACAAT----C-AAATTCCTAG-AA----ACAAAT
gi|121886 : A-CG-T--CCTATATTAAC-T-GT-CTGCAG-GCA-GGTAA----------------AATGGCTAATAAA--CCAAT----C-AAATTTCTAGAAA----TCTAATTT--GCAAT-ATGACA
gi|121887 : TATTACA---GC-TT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121888 : -CAGAGCA-GGTAATATGGT-CTCATAA-TAACTGCCAATGAA--GCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAAT-ATAACAAA
gi|121889 : CA-GGTAAGACGGAACTCATAA-TAACGGCTAATGAA--CC-AT----C-ACATTCC-AA-AA----TCTAATTC--GCA-T-ATGACAAA
blockSeqs : A A C A T T T A G T A T AA CATG C A AATT TG C
blockSeqs : . . . . . . G . . A . A . . . . C . .
blockSeqs : . . . . . . G . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . T
blockSeqs : . . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons :
originalCons : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
finalCons : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Alignments
lowQualScore : 2 2 2 2 2 2 7 2 2 4 2 1 33 6666 2 2 8888 44 3
lowQualScore : . . . . . . . . . . . . .. .... . . .... .. .
lowQualScore : 9 7 7 5 5 5 1 4 2 7 7 0 99 1111 9 9 9999 22 1
consensus : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
Reference ( family-894 ) : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGGT-CTCATAA-TAACGGCNAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121872 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-GT-CAG-GCA-GGTAATATGGT-CTCATGA-TAACGGCAAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121873 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-GGTGATATGGT-CTCATAA-TAACGGCTAATGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121874 : CAGTAA-GATCA-CG-TGACCTATATTACC-T-GT-CT-CAG-GCA-GGTAATATGCT-CTCATAA-TAACGGCAAATGAA--GCAATCATGC-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121875 : CAGTAA-GATCA-CG-TGACTTATATTACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCGAATGAA--CCAAT----C-ATATCTCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121876 : CAGAAA-GATCA-CG-TGACCTATATCACC-T-GT-AT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCAAATTAA--CTAAT----C-AAATTCCTAC-AA----TCTAATTT--GCAAT-ATGACAAA
gi|121877 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CT-CAG-GCA-AGTAATATGGT-ATCATAA-TAACGGCTAATGGA--CCAAC----G-GAATTCCTAG-AA----TTTAATTT--GCAGT-ATTACAAA
gi|121878 : CAGTAAAGATCA-CG-TGAC-TATATTACC-T-GT-CTTCAG-GCA-GGTAATATAGTTCTCATAAATAACGGCAAATGAAAACCAAT----CCAAATTTCTAG-AA----TCTGATTT--GCAGT-ATGACAA
gi|121879 : CAGTAA-GATCA-CGCTGATCTATAATACC-TTGTTCT-CAG--CA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AAAATTTCTAATTT--GCAGT-ATGACAAA
gi|121880 : CAGTAA-GATCA-AG-TGACTTATATTACT-T-GT-CT-CAG-ACA-GGAAATATGGT-CTGATAA-TAACGGCAAAT
gi|121881 : CAGTAA--ATCT-AT-TGATCTATAATACTAT-GT-CG-CCG-GCA---TAATATATT-CTAA-AA-TAATGGCTACTGAT--CCAAT----C-ACATTCCTAG-AAC---TCTAATTTTGGCAGTCATGACAAA
gi|121882 : CAGTAA-TATCA-CG-TGATCTATAATA-C-T-GT-CT-CAG-GCAGGGTAATATAGT-
gi|121883 : CAGTAA-GATCA-CG-TGACCTATATTACC-G-GT-CT-----GCA-TGTAAACTGGT-ggtaaaaggcaagattaacgaacagtgttcaatctcgcaagtctaat
gi|121884 : CAGTAA-GATCA-CG-TGATCTATATTACC-T-GT-CTGCAA-AGA-GGT
gi|121885 : GTAA-GATCAACG-TGATCTATAATACC-T-GT-CT-CAG-GCA-GGTAATATAGT-CT-ATAA-TAACGGCTAATGAA--ACAAT----C-AAATTCCTAG-AA----ACAAAT
gi|121886 : A-CG-T--CCTATATTAAC-T-GT-CTGCAG-GCA-GGTAA----------------AATGGCTAATAAA--CCAAT----C-AAATTTCTAGAAA----TCTAATTT--GCAAT-ATGACA
gi|121887 : TATTACA---GC-TT-CAG-GCA-GGTAATATAGT-CTCATAA-TAACGGCTAACGAA--CCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAGT-ATGACAAA
gi|121888 : -CAGAGCA-GGTAATATGGT-CTCATAA-TAACTGCCAATGAA--GCAAT----C-AAATTCCTAG-AA----TCTAATTT--GCAAT-ATAACAAA
gi|121889 : CA-GGTAAGACGGAACTCATAA-TAACGGCTAATGAA--CC-AT----C-ACATTCC-AA-AA----TCTAATTC--GCA-T-ATGACAAA