lowQualScore : 11 111 3 222 222 11 333 1111 11111111111
lowQualScore : 66 00 1 0 55 555 000 3 9 3 77 3 44 3 3 77 3 3 3 6 3 44 777 0 6 44 5 2 111 00 0 000 0 0000 5 2 2 44444444444 0 5
lowQualScore : .. .. . . .. ... ... . . . .. . .. . . .. . . . . . .. ... . . .. . . ... .. . ... . .... . . . ........... . .
lowQualScore : 11 66 0 3 00 333 000 6 9 3 99 3 66 3 3 99 3 3 3 7 3 66 222 5 7 66 8 9 666 00 7 000 9 6666 0 5 0 22222222222 2 7
consensus : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCC-T--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGG-CTAGT-GGG--TTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
Reference ( gi|134266 ) : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCC-T--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGG-C-AGT-GGG--TTG-AAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-G-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134267 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAGTTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCC-T--GGGCTAGTGA-ATTT--TG-TG-AAG-TCTAC-TAG-CCCTACTGG-CTAGT-GGG--TTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTATG-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCAAAAGGTCACAAGGTTAG-AACT
gi|134268 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGG-A--TA---GTA-GATTTTATCC-T--GGGCTAGTGA-ATTT--TG-TG-AACATCTAC-TAG-CCCTACTGG-CTAGT-GGG--TTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-ATCTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCACAACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134269 : TTACACCATGAATGC--T--TTTAAAAAATTAAAATTGGGAGCATAGT--AGGGG--TA---GTT-GATTTTTTTC-TT-GGGCTAGTGA-ATTT--CG-TG-AA--TCTAC-TAG-CCCTACTGG-CTAGT-GGG--TT--CAAAAAG-TTTT--TGCAAA-GACTG
gi|134270 : TTACACCATTAATGT--T--TTTGAAAAATTAAAATCTTGAGCAAAGT--TGGGC--AA---GTA-GATTTTCTCC-T--GGGCTAGTGA-ATTT--TG-GG-AA--TTTAC-TAG-CCCTACTGG-CTAGT-GGG--TTT--AAAAAG-TTTT--CGCAAA-GACTG
gi|134271 : TTACGCCATGAACAC--T--T--GAAAAATTAAAATCGGGAGCAGAGT--TGGGA--TA---GTA-AATTTGTTCC-T--GGGCTAGAGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACCGG-CTAGT-GGG--TCA-AAGACTG-GTCT--CTC--T-GTCAGAACCCATGACAG
gi|134272 : TTACGCCATGAACACATTAATTTGAAAAATTAGAATCAGGAGCAAAGT--TGGGA--TA---GAAGGATTTTCTCC-T--GGGCTAGTAA-A-TT--TG-TG-AA--TCTAC-TAGCCCCTACTGG-CTAGT-GGG--TTC-AATTAAGTTTTT--TGCAAAGGACTG
gi|134273 : TTACGACATGAACGC--T--TTTGAAAATTTATA-TCGGAAGCAAAGT--TGGGA--TA---GTG-GATTTT-TCCGT--GGGCTAGTGA---TT--TG-TG-AT--TCTCCTTAG-CCCTACCGG-CTGGT-GGG--TT---CAAAAG-TTTTGGCGC-GA-GACTG
gi|134274 : CCATGAACGC--T--TTTGAAAAATTAAATTTGGGAG---AGT------A--TACACATA-GATTTTTTCC-T--GGGCTAGTGA-ATTT---G-TG-AA--TTTAC-TAG-CCCTATTGG-CTAAT-GGT--TTC-AAAAA-G-TTTT--CGCGAA-GACTGCAATT
gi|134275 : AACGC--TA-TTTGAGAAATCAAAA---GGAGCAAAATATTGGGC--CAA--GTG-AATTTTTTTC-T--GGGCTAGTGACATTTACTA-TTTAA--TTTAC-TAG-CCCTACTGG-CTAGCAAAG--TTT-CAAAAAGTTTTT--CGC-AA-GACTG-TACTATGA
gi|134276 : AAACT--TGGGGGCCA---GTA-AATTTCA--C-TAGGGGCCATTGC-ATTC--AG-GC-AG--TCCAC-TGG-TCCTACTGGCC-AGC-AAGTTTTG-GAAA----TTTT--CGTGAA-GACTG
gi|134277 : GC--TGGGC--TA---GTA-GATTTTTTGT-T--GCGCTAGTG--ATTT--TG-TG--A--TCTAC-TAG-CCCTACTGG-CTAGT-GAG--TT--CCAAAGG-TTTC--CACGAA-GAC
gi|134278 : TTTATTT-T--GGGT-----A-ATCA--TGATG-AA--TCTAC-TAG-CCCTACTGG-CTAGT-GGG--TTG--AAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTA-TTCCGGAAATGTT---TATGTTGC----ATTCTCTTAAAAGTAGGTCA-AACCCTAAAAATGAGTTAAACCCCAAGGTCACAAGGTTAG-AACT
gi|134279 : GCAAG-GAATAAA--TATGAAAGCCCTA-C-CTTCAATTG-TTCAAGGGATATTATCTAGGTCAG----ATTTTCTTAAAAACAGGTCA-AA-CTTAAAGGT-----------CAAAGTCACAAAGTCAACAACT
gi|134280 : AN-GACTGAAACTATGACAGCCCTA-T-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134281 : AAATTATGAAAATTCTA-T-CTAAAATGG-TTTGGAAAATATCGAATATGTCAC----ATTTT-TAAAAAGTATGTCA-AACTCCAAG-----GT-------CAAGGTCACAA-GTTCA-AACT
gi|134282 : AAACAATGAAAGCTCTA-T-CTAAAAATAGTTCAGGAACTATTGAATATGT--C----ACTTTTTTAAAA------TA-AA-----AAAGTAGGCCAAACTCCAAGGTCA-AAAGTTCA-AGCT
gi|134283 : ATGTTGCCCAGATTTTCTTAAAAGTAGGTCA-AACTCTAA---TG---------TCAAGATCACAAG
Alignments
lowQualScore : 111 222
lowQualScore : 55 99 0 44 44 999 3 1 77 3 44 3 3 77 3 3 3 888 6 44 4 2 555 66 666 0 9999 4 8888888 00 5
lowQualScore : .. .. . .. .. ... . . .. . .. . . .. . . . ... . .. . . ... .. ... . .... . ....... .. .
lowQualScore : 55 55 5 66 66 222 3 0 33 1 22 1 1 33 1 1 1 999 2 22 5 7 999 00 222 7 4444 4 9999999 22 0
consensus : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
Reference ( family-891 ) : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134266 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGC-AGT-GGGTTG-AAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-G-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134267 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAGTTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AAG-TCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-TGCTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCAAAAGGTCACAAGGTTAG-AACT
gi|134268 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGG-A--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AACATCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTAAT-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCACAACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134269 : TTACACCATGAATGC--T--TTTAAAAAATTAAAATTGGGAGCATAGT--AGGGG--TA---GTT-GATTTTTTTCTT-GGGCTAGTGA-ATTT--CG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTC--AAAAAG-TTTT--TGCAAA-GACTG
gi|134270 : TTACACCATTAATGT--T--TTTGAAAAATTAAAATCTTGAGCAAAGT--TGGGC--AA---GTA-GATTTTCTCCT--GGGCTAGTGA-ATTT--TG-GG-AA--TTTAC-TAG-CCCTACTGGCTAGT-GGGTTT--AAAAAG-TTTT--CGCAAA-GACTG
gi|134271 : TTACGCCATGAACAC--T--T--GAAAAATTAAAATCGGGAGCAGAGT--TGGGA--TA---GTA-AATTTGTTCCT--GGGCTAGAGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACCGGCTAGT-GGGTCA-AAGACTG-GTCT--CTCT---GTCAGAACCCATGACAG
gi|134272 : TTACGCCATGAACACATTAATTTGAAAAATTAGAATCAGGAGCAAAGT--TGGGA--TA---GAAGGATTTTCTCCT--GGGCTAGTAA-A-TT--TG-TG-AA--TCTAC-TAGCCCCTACTGGCTAGT-GGGTTC-AATTAAGTTTTT--TGCAAAGGACTG
gi|134273 : TTACGACATGAACGC--T--TTTGAAAATTTATA-TCGGAAGCAAAGT--TGGGA--TA---GTG-GATTTTTCCGT--GGGCTAGTGA---TT--TG-TG-AT--TCTCCTTAG-CCCTACCGGCTGGT-GGGTTC---AAAAG-TTTTGGCGCG-A-GACTG
gi|134274 : CCATGAACGC--T--TTTGAAAAATTAAATTTGGGAG---AGT------A--TACACATA-GATTTTTTCCT--GGGCTAGTGA-ATTT---G-TG-AA--TTTAC-TAG-CCCTATTGGCTAAT--GGTTT-CAAAAAG-TTTT--CGCGAA-GACTGCAATT
gi|134275 : AACGC--TA-TTTGAGAAATCAAAA---GGAGCAAAATATTGGGC--CAA--GTG-AATTTTTTTCT--GGGCTAGTGACATTTACTA-TTTAA--TTTAC-TAG-CCCTACTGGCTAGCAAAGTTT-CAAAAAGTTTTT--CGC-AA-GACTG-TACTATGA
gi|134276 : AAACT--TGGGGGCCA---GTA-AATTTCA--CTAGGGGCCATTGC-ATTC--AG-GC-AG--TCCAC-TGG-TCCTACTGGCCAGC-AAGTTT-TGGAAA--TTTT--CGTGAA-GACTG
gi|134277 : GC--TGGGC--TA---GTA-GATTTTTTGTT--GCGCTAGTGA--TTT--TG-TG-A---TCTAC-TAG-CCCTACTGGCTAGT-GAGTTC--CAAAGG-TTTC--CACGAA-GAC
gi|134278 : TTTATTTT--GGGT-----A-ATCA--TGATG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTG-AAAA-AG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTA-TTCCGGAAATGTT---TATGTTGC----ATTCTCTTAAAAGTAGGTCA-AACCCTAAAAATGAGTTAAACCCCAAGGTCACAAGGTTAG-AACT
gi|134279 : GCAAG-GAATAAA--TATGAAAGCCCTA-C-CTTCAATTG-TTCAAGGGATATTATCTAGGTCAG----ATTTTCTTAAAAACAGGTCA-AACT-TAAAGGT-----------CAAAGTCACAAAGTCAACAACT
gi|134280 : AN-GACTGAAACTATGACAGCCCTA-T-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134281 : AAATTATGAAAATTCTA-T-CTAAAATGG-TTTGGAAAATATCGAATATGTCAC----ATTTT-TAAAAAGTATGTCA-AACTCC-AAGGT-----------CAAGGTCACAA-GTTCA-AACT
gi|134282 : AAACAATGAAAGCTCTA-T-CTAAAAATAGTTCAGGAACTATTGAATATGTCAC------TTTTTTAAAA------TA-AA-----AAAGTAGGCCAAACTCCAAGGTCA-AAAGTTCA-AGCT
gi|134283 : ATGTTGCCCAGATTTTCTTAAAAGTAGGTCA-AACTCTAA---TG---------TCAAGATCACAAG
Alignments
lowQualScore : 111 222
lowQualScore : 55 99 0 44 44 999 3 1 77 3 44 3 3 77 3 3 3 888 6 44 4 2 555 66 666 0 9999 4 8888888 00 5
lowQualScore : .. .. . .. .. ... . . .. . .. . . .. . . . ... . .. . . ... .. ... . .... . ....... .. .
lowQualScore : 55 55 5 66 66 222 3 0 33 1 22 1 1 33 1 1 1 999 2 22 5 7 999 00 222 7 4444 4 9999999 22 0
consensus : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
Reference ( family-891 ) : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134266 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGC-AGT-GGGTTG-AAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-G-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134267 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAGTTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AAG-TCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-TGCTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCAAAAGGTCACAAGGTTAG-AACT
gi|134268 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGG-A--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AACATCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTAAT-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCACAACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134269 : TTACACCATGAATGC--T--TTTAAAAAATTAAAATTGGGAGCATAGT--AGGGG--TA---GTT-GATTTTTTTCTT-GGGCTAGTGA-ATTT--CG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTC--AAAAAG-TTTT--TGCAAA-GACTG
gi|134270 : TTACACCATTAATGT--T--TTTGAAAAATTAAAATCTTGAGCAAAGT--TGGGC--AA---GTA-GATTTTCTCCT--GGGCTAGTGA-ATTT--TG-GG-AA--TTTAC-TAG-CCCTACTGGCTAGT-GGGTTT--AAAAAG-TTTT--CGCAAA-GACTG
gi|134271 : TTACGCCATGAACAC--T--T--GAAAAATTAAAATCGGGAGCAGAGT--TGGGA--TA---GTA-AATTTGTTCCT--GGGCTAGAGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACCGGCTAGT-GGGTCA-AAGACTG-GTCT--CTCT---GTCAGAACCCATGACAG
gi|134272 : TTACGCCATGAACACATTAATTTGAAAAATTAGAATCAGGAGCAAAGT--TGGGA--TA---GAAGGATTTTCTCCT--GGGCTAGTAA-A-TT--TG-TG-AA--TCTAC-TAGCCCCTACTGGCTAGT-GGGTTC-AATTAAGTTTTT--TGCAAAGGACTG
gi|134273 : TTACGACATGAACGC--T--TTTGAAAATTTATA-TCGGAAGCAAAGT--TGGGA--TA---GTG-GATTTTTCCGT--GGGCTAGTGA---TT--TG-TG-AT--TCTCCTTAG-CCCTACCGGCTGGT-GGGTTC---AAAAG-TTTTGGCGCG-A-GACTG
gi|134274 : CCATGAACGC--T--TTTGAAAAATTAAATTTGGGAG---AGT------A--TACACATA-GATTTTTTCCT--GGGCTAGTGA-ATTT---G-TG-AA--TTTAC-TAG-CCCTATTGGCTAAT--GGTTT-CAAAAAG-TTTT--CGCGAA-GACTGCAATT
gi|134275 : AACGC--TA-TTTGAGAAATCAAAA---GGAGCAAAATATTGGGC--CAA--GTG-AATTTTTTTCT--GGGCTAGTGACATTTACTA-TTTAA--TTTAC-TAG-CCCTACTGGCTAGCAAAGTTT-CAAAAAGTTTTT--CGC-AA-GACTG-TACTATGA
gi|134276 : AAACT--TGGGGGCCA---GTA-AATTTCA--CTAGGGGCCATTGC-ATTC--AG-GC-AG--TCCAC-TGG-TCCTACTGGCCAGC-AAGTTT-TGGAAA--TTTT--CGTGAA-GACTG
gi|134277 : GC--TGGGC--TA---GTA-GATTTTTTGTT--GCGCTAGTGA--TTT--TG-TG-A---TCTAC-TAG-CCCTACTGGCTAGT-GAGTTC--CAAAGG-TTTC--CACGAA-GAC
gi|134278 : TTTATTTT--GGGT-----A-ATCA--TGATG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTG-AAAA-AG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTA-TTCCGGAAATGTT---TATGTTGC----ATTCTCTTAAAAGTAGGTCA-AACCCTAAAAATGAGTTAAACCCCAAGGTCACAAGGTTAG-AACT
gi|134279 : GCAAG-GAATAAA--TATGAAAGCCCTA-C-CTTCAATTG-TTCAAGGGATATTATCTAGGTCAG----ATTTTCTTAAAAACAGGTCA-AACT-TAAAGGT-----------CAAAGTCACAAAGTCAACAACT
gi|134280 : AN-GACTGAAACTATGACAGCCCTA-T-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134281 : AAATTATGAAAATTCTA-T-CTAAAATGG-TTTGGAAAATATCGAATATGTCAC----ATTTT-TAAAAAGTATGTCA-AACTCC-AAGGT-----------CAAGGTCACAA-GTTCA-AACT
gi|134282 : AAACAATGAAAGCTCTA-T-CTAAAAATAGTTCAGGAACTATTGAATATGTCAC------TTTTTTAAAA------TA-AA-----AAAGTAGGCCAAACTCCAAGGTCA-AAAGTTCA-AGCT
gi|134283 : ATGTTGCCCAGATTTTCTTAAAAGTAGGTCA-AACTCTAA---TG---------TCAAGATCACAAG
blockSeqs : AT AA AT GC CAC G A AG C AC A T CA T C A GGA T GG A G TG AG ATC CCAG C GAGTTAC C
blockSeqs : . A . . A . A T . . . . G . . . GGA T . A . AT C GAA . . GAGTTAC .
blockSeqs : . . . . . . T . . . . . . . . . AA . . A . T C GAA . . GAGTTAA .
blockSeqs : . . . . . . C . . . . . . . . . CA . . A . C A . . . GAGTTAC .
blockSeqs : . . . . . . T . . . . . . . . . TC . . T . T G . . . AGGCCAA .
blockSeqs : . . . . . . C . . . . . . . . . TC . . A . T C . . . G .
blockSeqs : . . . . . . T . . . . . . . . . TT . . G . T G . . . . .
blockSeqs : . . . . . . T . . . . . . . . . GA . . G . . . .
blockSeqs : . . . . . . T . . . . . . . . . C . . G .
blockSeqs : . . . . A . . . . . . . . . T . . G .
blockSeqs : . . . . T . . . . . . . . . C . . A .
blockSeqs : A . . . . . . . . . C . . A .
blockSeqs : . .
blockSeqs : .
blockSeqCons :
originalCons : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
finalCons : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
Alignments
lowQualScore : 111 222
lowQualScore : 55 99 0 44 44 999 3 1 77 3 44 3 3 77 3 3 3 888 6 44 4 2 555 66 666 0 9999 4 8888888 00 5
lowQualScore : .. .. . .. .. ... . . .. . .. . . .. . . . ... . .. . . ... .. ... . .... . ....... .. .
lowQualScore : 55 55 5 66 66 222 3 0 33 1 22 1 1 33 1 1 1 999 2 22 5 7 999 00 222 7 4444 4 9999999 22 0
consensus : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
Reference ( family-891 ) : TTACGCCATGAACGC--T--TTTGAAAAATTAAAATCGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTNTCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTN-AAAAAAG-TTTT--CGCGAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTN-TTCCGGAAATGTT---TATGTCGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134266 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACTGGC-AGT-GGGTTG-AAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-G-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134267 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAGTTGGGAGCAAAGT--TGGGA--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AAG-TCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-TGCTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCAAAAGGTCACAAGGTTAG-AACT
gi|134268 : TTACGCCATGAACAC--T--TTTGAAAAATTAAAATTGGGAGCAAAGT--TGG-A--TA---GTA-GATTTTATCCT--GGGCTAGTGA-ATTT--TG-TG-AACATCTAC-TAG-CCCTACTGGCTAGT-GGGTTGGAAAAAAG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTAAT-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCACAACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134269 : TTACACCATGAATGC--T--TTTAAAAAATTAAAATTGGGAGCATAGT--AGGGG--TA---GTT-GATTTTTTTCTT-GGGCTAGTGA-ATTT--CG-TG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTC--AAAAAG-TTTT--TGCAAA-GACTG
gi|134270 : TTACACCATTAATGT--T--TTTGAAAAATTAAAATCTTGAGCAAAGT--TGGGC--AA---GTA-GATTTTCTCCT--GGGCTAGTGA-ATTT--TG-GG-AA--TTTAC-TAG-CCCTACTGGCTAGT-GGGTTT--AAAAAG-TTTT--CGCAAA-GACTG
gi|134271 : TTACGCCATGAACAC--T--T--GAAAAATTAAAATCGGGAGCAGAGT--TGGGA--TA---GTA-AATTTGTTCCT--GGGCTAGAGA-ATTT--TG-TG-AA--TCTAC-TAG-CCCTACCGGCTAGT-GGGTCA-AAGACTG-GTCT--CTCT---GTCAGAACCCATGACAG
gi|134272 : TTACGCCATGAACACATTAATTTGAAAAATTAGAATCAGGAGCAAAGT--TGGGA--TA---GAAGGATTTTCTCCT--GGGCTAGTAA-A-TT--TG-TG-AA--TCTAC-TAGCCCCTACTGGCTAGT-GGGTTC-AATTAAGTTTTT--TGCAAAGGACTG
gi|134273 : TTACGACATGAACGC--T--TTTGAAAATTTATA-TCGGAAGCAAAGT--TGGGA--TA---GTG-GATTTTTCCGT--GGGCTAGTGA---TT--TG-TG-AT--TCTCCTTAG-CCCTACCGGCTGGT-GGGTTC---AAAAG-TTTTGGCGCG-A-GACTG
gi|134274 : CCATGAACGC--T--TTTGAAAAATTAAATTTGGGAG---AGT------A--TACACATA-GATTTTTTCCT--GGGCTAGTGA-ATTT---G-TG-AA--TTTAC-TAG-CCCTATTGGCTAAT--GGTTT-CAAAAAG-TTTT--CGCGAA-GACTGCAATT
gi|134275 : AACGC--TA-TTTGAGAAATCAAAA---GGAGCAAAATATTGGGC--CAA--GTG-AATTTTTTTCT--GGGCTAGTGACATTTACTA-TTTAA--TTTAC-TAG-CCCTACTGGCTAGCAAAGTTT-CAAAAAGTTTTT--CGC-AA-GACTG-TACTATGA
gi|134276 : AAACT--TGGGGGCCA---GTA-AATTTCA--CTAGGGGCCATTGC-ATTC--AG-GC-AG--TCCAC-TGG-TCCTACTGGCCAGC-AAGTTT-TGGAAA--TTTT--CGTGAA-GACTG
gi|134277 : GC--TGGGC--TA---GTA-GATTTTTTGTT--GCGCTAGTGA--TTT--TG-TG-A---TCTAC-TAG-CCCTACTGGCTAGT-GAGTTC--CAAAGG-TTTC--CACGAA-GAC
gi|134278 : TTTATTTT--GGGT-----A-ATCA--TGATG-AA--TCTAC-TAG-CCCTACTGGCTAGT-GGGTTG-AAAA-AG-TTTT--CGCAAA-GACTGAAACTATGACAGCCCTA-T-CTGAAATTA-TTCCGGAAATGTT---TATGTTGC----ATTCTCTTAAAAGTAGGTCA-AACCCTAAAAATGAGTTAAACCCCAAGGTCACAAGGTTAG-AACT
gi|134279 : GCAAG-GAATAAA--TATGAAAGCCCTA-C-CTTCAATTG-TTCAAGGGATATTATCTAGGTCAG----ATTTTCTTAAAAACAGGTCA-AACT-TAAAGGT-----------CAAAGTCACAAAGTCAACAACT
gi|134280 : AN-GACTGAAACTATGACAGCCCTA-T-CTGAAATTC-TTCCGGAAATGTT---TATGTTGC----ATTTTCTTAAAAGTAGGTCA-AACCCTAAAAGTGAGTTACACCCCAAGGTCACAAGGTTAG-AACT
gi|134281 : AAATTATGAAAATTCTA-T-CTAAAATGG-TTTGGAAAATATCGAATATGTCAC----ATTTT-TAAAAAGTATGTCA-AACTCC-AAGGT-----------CAAGGTCACAA-GTTCA-AACT
gi|134282 : AAACAATGAAAGCTCTA-T-CTAAAAATAGTTCAGGAACTATTGAATATGTCAC------TTTTTTAAAA------TA-AA-----AAAGTAGGCCAAACTCCAAGGTCA-AAAGTTCA-AGCT
gi|134283 : ATGTTGCCCAGATTTTCTTAAAAGTAGGTCA-AACTCTAA---TG---------TCAAGATCACAAG