lowQualScore : 11
lowQualScore : 0 4 2 2 33 888 2 2 4 777 66 2
lowQualScore : . . . . .. ... . . . ... .. .
lowQualScore : 6 7 4 4 77 888 4 4 1 555 99 4
consensus : ATTTTATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-N-TC-AAT-ACCT
Reference ( gi|85321 ) : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-A-TC-AAT-ACCT
gi|85322 : ATTTCATCGTAACCAA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-A-TC-AAT-ACCT
gi|85323 : ATTTCATCGTAACCAA-GAACTAGATAAATTCACC-TAGT-G-A-TA-TCCT-A-TC-AAT-ACCT
gi|85324 : ATTTCATCGTTAC-AA-GAACTAGATAAAT-CACC-AAGTAA-A-TA-TTCT-A-TG-AAT-ACCT
gi|85326 : ATTTCATCTTAAC-AA-GAACTAGATAAAT-CACA--AGT-A-A-TA-TTCT-A-TG-AAT-ACCT
gi|85327 : ATTTAATCGTAAA-AA-GAACTAGATAAAT-CCCC-TAGA-A-A-TT-TTCT-A-TC-AAT-ACCT
gi|85325 : ATTTCATCGTTAC-A--GAACTAGATAAAT-CACC--AAT-ATA-TA-TTCT-ATTT-GAT-ACCT
gi|85328 : TTTCATCGTAAC-AA-GAAACAGATAAAT-CACCAAAGT-A-A-TATTTCT-A-TG-AAT-ACCT
gi|85329 : TTTATCGTAAC-AA-GAAATAGATAAAT-CACC-TAGT-A-A-TA-TTCT-A-TT-AAT-ACCT
gi|85330 : TTTATCGTGAC-GA-GAACTAAATAAAT-CACA-AAGT-A-A-TA-TTCT-C-TC-AAT-ACCT
gi|85334 : TTTATCGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-T-TTAAAT-ACCT
gi|85332 : TTTATTGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-T-TA-AAT-ACCT
gi|85333 : TTTATTGTGAC-AA-GAAATAGATAAA--CACC-TAGT-A-A-TA-TTCT-T-TA-AAT-ACCT
gi|85331 : TTTATCGTAAT----GAACTAGATAAAT-CACT-AACT-A-A-TA-TTAT-C-TC-AAT-ACCT
gi|85335 : TTTATCGTAAC-AA-GAACTGGGTAATT-CAGT-AAGG-A-A-TG-TTCT-T-TC-AAT-ACCT
gi|85336 : TTACCGTAAC-AAAGAACTAGATAAAT-CAAT-AAGT-A-A-TA-TTCT-C-TC-AAT-ATCT
gi|85337 : TTACCGTAAC-AA-GAACTAGATAAAT-CACT-AAGT-A-ATTA-TTCT-C-T--AAT-AC
gi|85338 : ATCG-AAC-AA-GAACTAGATAAAT-CACCAAAGT-A-A-TA-TTCTAA-TG-AATAACCT
Alignments
lowQualScore : 4 2 2 55 2 2 2 2 55 66 2
lowQualScore : . . . .. . . . . .. .. .
lowQualScore : 4 2 2 44 2 2 2 2 44 00 2
consensus : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
Reference ( family-889 ) : ATTTTATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
gi|85321 : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85322 : ATTTCATCGTAACCAA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85323 : ATTTCATCGTAACCAA-GAACTAGATAAATTCACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85324 : ATTTCATCGTTAC-AA-GAACTAGATAAAT-CACC-AAGTAA-A-TA-TTCT-ATG-AAT-ACCT
gi|85325 : ATTTCATCGTTAC-A--GAACTAGATAAAT-CACC-AA-T-ATA-TA-TTCTATTT-GAT-ACCT
gi|85326 : ATTTCATCTTAAC-AA-GAACTAGATAAAT-CA-C-AAGT-A-A-TA-TTCT-ATG-AAT-ACCT
gi|85327 : ATTTAATCGTAAA-AA-GAACTAGATAAAT-CCCC-TAGA-A-A-TT-TTCT-ATC-AAT-ACCT
gi|85328 : TTTCATCGTAAC-AA-GAAACAGATAAAT-CACCAAAGT-A-A-TATTTCT-ATG-AAT-ACCT
gi|85329 : TTTATCGTAAC-AA-GAAATAGATAAAT-CACC-TAGT-A-A-TA-TTCT-ATT-AAT-ACCT
gi|85330 : TTTATCGTGAC-GA-GAACTAAATAAAT-CACA-AAGT-A-A-TA-TTCT-CTC-AAT-ACCT
gi|85331 : TTTATCGTAAT----GAACTAGATAAAT-CACT-AACT-A-A-TA-TTAT-CTC-AAT-ACCT
gi|85332 : TTTATTGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85333 : TTTATTGTGAC-AA-GAAATAGATAAA--CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85334 : TTTATCGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTTAAAT-ACCT
gi|85335 : TTTATCGTAAC-AA-GAACTGGGTAATT-CAGT-AAGG-A-A-TG-TTCT-TTC-AAT-ACCT
gi|85336 : TTACCGTAAC-AAAGAACTAGATAAAT-CAAT-AAGT-A-A-TA-TTCT-CTC-AAT-ATCT
gi|85337 : TTACCGTAAC-AA-GAACTAGATAAAT-CACT-AAGT-A-ATTA-TTCT-CT--AAT-AC
gi|85338 : ATCG-AAC-AA-GAACTAGATAAAT-CACCAAAGT-A-A-TA-TTCTAATG-AATAACCT
Alignments
lowQualScore : 4 2 2 55 2 2 2 2 55 66 2
lowQualScore : . . . .. . . . . .. .. .
lowQualScore : 4 2 2 44 2 2 2 2 44 00 2
consensus : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
Reference ( family-889 ) : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
gi|85321 : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85322 : ATTTCATCGTAACCAA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85323 : ATTTCATCGTAACCAA-GAACTAGATAAATTCACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85324 : ATTTCATCGTTAC-AA-GAACTAGATAAAT-CACC-AAGTAA-A-TA-TTCT-ATG-AAT-ACCT
gi|85325 : ATTTCATCGTTAC-A--GAACTAGATAAAT-CACC-AA-T-ATA-TA-TTCTATTT-GAT-ACCT
gi|85326 : ATTTCATCTTAAC-AA-GAACTAGATAAAT-CA-C-AAGT-A-A-TA-TTCT-ATG-AAT-ACCT
gi|85327 : ATTTAATCGTAAA-AA-GAACTAGATAAAT-CCCC-TAGA-A-A-TT-TTCT-ATC-AAT-ACCT
gi|85328 : TTTCATCGTAAC-AA-GAAACAGATAAAT-CACCAAAGT-A-A-TATTTCT-ATG-AAT-ACCT
gi|85329 : TTTATCGTAAC-AA-GAAATAGATAAAT-CACC-TAGT-A-A-TA-TTCT-ATT-AAT-ACCT
gi|85330 : TTTATCGTGAC-GA-GAACTAAATAAAT-CACA-AAGT-A-A-TA-TTCT-CTC-AAT-ACCT
gi|85331 : TTTATCGTAAT----GAACTAGATAAAT-CACT-AACT-A-A-TA-TTAT-CTC-AAT-ACCT
gi|85332 : TTTATTGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85333 : TTTATTGTGAC-AA-GAAATAGATAAA--CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85334 : TTTATCGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTTAAAT-ACCT
gi|85335 : TTTATCGTAAC-AA-GAACTGGGTAATT-CAGT-AAGG-A-A-TG-TTCT-TTC-AAT-ACCT
gi|85336 : TTACCGTAAC-AAAGAACTAGATAAAT-CAAT-AAGT-A-A-TA-TTCT-CTC-AAT-ATCT
gi|85337 : TTACCGTAAC-AA-GAACTAGATAAAT-CACT-AAGT-A-ATTA-TTCT-CT--AAT-AC
gi|85338 : ATCG-AAC-AA-GAACTAGATAAAT-CACCAAAGT-A-A-TA-TTCTAATG-AATAACCT
blockSeqs : C A T AA A T T T AT TA A
blockSeqs : C . . AA . . . . AA C .
blockSeqs : . . . T . . . . A C .
blockSeqs : . . . T . . . . A G .
blockSeqs : . . . A . . . . A T .
blockSeqs : . . . A . . . . A G .
blockSeqs : . . . A . . . . A C .
blockSeqs : . . . T . . . . A G .
blockSeqs : . . . T . . . . A T .
blockSeqs : . . . A . . . . C C .
blockSeqs : . . . A . . . . C C .
blockSeqs : . . . T . . . . T A .
blockSeqs : . . . T . . . . T A .
blockSeqs : . . . T . . . . T C .
blockSeqs : . . . A . . . . T C .
blockSeqs : . . . A . . . . C G .
blockSeqs : . . . A . . . . C . .
blockSeqCons :
originalCons : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
finalCons : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
Alignments
lowQualScore : 4 2 2 55 2 2 2 2 55 66 2
lowQualScore : . . . .. . . . . .. .. .
lowQualScore : 4 2 2 44 2 2 2 2 44 00 2
consensus : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
Reference ( family-889 ) : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-NAGT-A-A-TA-TTCT-NTC-AAT-ACCT
gi|85321 : ATTTCATCGTAAC-AA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85322 : ATTTCATCGTAACCAA-GAACTAGATAAAT-CACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85323 : ATTTCATCGTAACCAA-GAACTAGATAAATTCACC-TAGT-G-A-TA-TCCT-ATC-AAT-ACCT
gi|85324 : ATTTCATCGTTAC-AA-GAACTAGATAAAT-CACC-AAGTAA-A-TA-TTCT-ATG-AAT-ACCT
gi|85325 : ATTTCATCGTTAC-A--GAACTAGATAAAT-CACC-AA-T-ATA-TA-TTCTATTT-GAT-ACCT
gi|85326 : ATTTCATCTTAAC-AA-GAACTAGATAAAT-CA-C-AAGT-A-A-TA-TTCT-ATG-AAT-ACCT
gi|85327 : ATTTAATCGTAAA-AA-GAACTAGATAAAT-CCCC-TAGA-A-A-TT-TTCT-ATC-AAT-ACCT
gi|85328 : TTTCATCGTAAC-AA-GAAACAGATAAAT-CACCAAAGT-A-A-TATTTCT-ATG-AAT-ACCT
gi|85329 : TTTATCGTAAC-AA-GAAATAGATAAAT-CACC-TAGT-A-A-TA-TTCT-ATT-AAT-ACCT
gi|85330 : TTTATCGTGAC-GA-GAACTAAATAAAT-CACA-AAGT-A-A-TA-TTCT-CTC-AAT-ACCT
gi|85331 : TTTATCGTAAT----GAACTAGATAAAT-CACT-AACT-A-A-TA-TTAT-CTC-AAT-ACCT
gi|85332 : TTTATTGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85333 : TTTATTGTGAC-AA-GAAATAGATAAA--CACC-TAGT-A-A-TA-TTCT-TTA-AAT-ACCT
gi|85334 : TTTATCGTGAC-AA-GAAATAGATAAAA-CACC-TAGT-A-A-TA-TTCT-TTTAAAT-ACCT
gi|85335 : TTTATCGTAAC-AA-GAACTGGGTAATT-CAGT-AAGG-A-A-TG-TTCT-TTC-AAT-ACCT
gi|85336 : TTACCGTAAC-AAAGAACTAGATAAAT-CAAT-AAGT-A-A-TA-TTCT-CTC-AAT-ATCT
gi|85337 : TTACCGTAAC-AA-GAACTAGATAAAT-CACT-AAGT-A-ATTA-TTCT-CT--AAT-AC
gi|85338 : ATCG-AAC-AA-GAACTAGATAAAT-CACCAAAGT-A-A-TA-TTCTAATG-AATAACCT