lowQualScore                  :     2 2 5 5555  2 33 2 2 2      33 4  4 33  4  55 2  2     8888    4 2 2         2 2 2 2  2   2  5   2  5  55  7  2 55  2       2 2    33    2  2    
lowQualScore                  :     . . . ....  . .. . . .      .. .  . ..  .  .. .  .     ....    . . .         . . . .  .   .  .   .  .  ..  .  . ..  .       . .    ..    .  .    
lowQualScore                  :     5 5 0 3333  5 44 5 5 5      22 7  7 22  7  66 4  4     2222    7 4 4         5 5 5 5  5   5  0   5  0  99  5  5 99  5       5 5    44    5  9    
consensus                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
Reference ( gi|104122 )       : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104120                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104123                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGTG-T-ATTT--TCTG-AC-CAGG
gi|104124                     : GAGC-C-T-G----TT-T--C-ACT-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCCCC--TAAT-TCT-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TATTT-T--AG-TCGGGCG-T-ATTT--TTTG-AC-CAGG
gi|104125                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--TTCG-T--AGGAC--T-TAACGCCC----TAAT-T-T-AAGGCTAGT-CAA-G-AG-GGC-TT-ACG-CC-AA--TA-TTAT--AGCTCGGGCG-T-A-TT--TCTG-AC-CAGG
gi|104126                     : GAGC-C-T-G----TT-T--C-A-T---AAGG--T--G----AG-AC--T-TA-CGCCC----TAAT-T---AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TC-G-AC-CAGG
gi|104121                     : GAGC-CAT-G----TT----C-A-T-CAAAGG--T-CG-T---G-AC--T-TA-C-CCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA---A-TT-T--AG-TCGGGCG-G-ATTT--TCTG-AC-CAG
gi|104127                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-T-G-AG-GGC-TT-ACA-CC-AA----------------------T-ATTT--TCTG-AC-CAGG
gi|104128                     : GAGC-C-T-G----TC-TTCC-A-T-CAA-GG--T-CG-T--AG-ACC-T-TA-CGACC----TAAT-T-T-A-GGCTAGT-C-A-G-AGTGGC-TT-ACG-CC-AAA-TA-TT-TT-AG-TCGGGCG-T-AATT--TCTG-AC-
gi|104129                     : GAGT-C-TTG----TT-T--C-A-T-CAAAGG--TTCGAT--AG-AC--T-AT-CGCC-----TAAT-T-T-TAAGCTAAT-C-A-G-AG-GGC-TT-ACG-CC-AA--TAGTT-T--AG-TCGGGCG-T-TTTT--TCTGTAC-CAGG
gi|104130                     : GAGC-C-T-G----TTCT--CTA-T-CAAAGG--T-CG-TTGAG-AC--TATA-CGCC-----TAATCT-T-AAGGCTAGT-C-ACGTAG-GGC-TTTACA-CCCAA--TA-TT-TCTAG-TCGGGCG-T-ATTT--TCTG-ACGCAGG
gi|104131                     : GAGC-C-T-GGGTGTT-G--C-A-TTCAAAGGGTC-CG-T--AGGAC--T-TA-CGCCC----TAATGT-T-AAGGCTAGTTC-A-G-AG-GGC-TT-ACGCCC-AA--TATTT-T--AG-TCGGGCG-TGATTTTGTCTG-AC-
gi|104133                     : GAGCAC-T-G----TT-T------T-CAAAGG--T-C--------------------------TAAT-T-A-AAGGCTAGT-C-A-G-AG-GGC-TTAACG-CCAAA--TA-TT-T--AG-TCGGGCGAT-ATTT--TCTG-AC-CAG
gi|104132                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--A---------A-CGCCCAGCGTAAC-T-T-TACGCCAG
gi|104134                     :  AGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-
gi|104135                     :   GC-C-TAG----TT-T--C-A-T-CAAAAG--T-CGCT--AG-AC--T-TA-CGCCC----TAAT-T-TGAAGGCTAGT-C-A-G-AA-GGCATT-ACG-CC-AATTTA-TT-T--AG-TCGG--G-T-ATTT--TCTG-AC-
gi|104136                     :     -C-T-G----TT-T--C-A-T--AAAGG--T-CG-T--AG-AC--T--A-CGCCC----TA---T-T-AAGG-TAGT-C-A-G-AG-GG--TT-ACG-CC-AA--TA-TT-T--AG-TCGG--G-T-ATTT--TCTG-CT-CAGG
gi|104137                     :                               GG--T-CG-T--AG-ACCTT-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-G-A-GG-GGC-TT-ACG--C-AA--TA-TT-T--AG-TCGGGCG-T-A-TT--TCTG-





Alignments
lowQualScore                  :     2 2 4 5555  2 33 2 2 2      33 4  4 33  4  55 2  2     7777    4 2 2         2 2 2 2  2   2  4   2  4  55  7  2 55  2       2 2    33    2  2    
lowQualScore                  :     . . . ....  . .. . . .      .. .  . ..  .  .. .  .     ....    . . .         . . . .  .   .  .   .  .  ..  .  . ..  .       . .    ..    .  .    
lowQualScore                  :     4 4 7 0000  4 22 4 4 4      11 4  4 11  4  33 2  2     8888    4 2 2         4 4 4 4  4   4  7   4  7  66  1  4 66  4       4 4    22    4  7    
consensus                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
Reference ( family-886 )      : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104120                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104121                     : GAGC-CAT-G----TT----C-A-T-CAAAGG--T-CG-T---G-AC--T-TA-C-CCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA---A-TT-T--AG-TCGGGCG-G-ATTT--TCTG-AC-CAG
gi|104122                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104123                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGTG-T-ATTT--TCTG-AC-CAGG
gi|104124                     : GAGC-C-T-G----TT-T--C-ACT-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCCCC--TAAT-TCT-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TATTT-T--AG-TCGGGCG-T-ATTT--TTTG-AC-CAGG
gi|104125                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--TTCG-T--AGGAC--T-TAACGCCC----TAAT-T-T-AAGGCTAGT-CAA-G-AG-GGC-TT-ACG-CC-AA--TA-TTAT--AGCTCGGGCG-T-A-TT--TCTG-AC-CAGG
gi|104126                     : GAGC-C-T-G----TT-T--C-A-T---AAGG--T--G----AG-AC--T-TA-CGCCC----TAAT-T---AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TC-G-AC-CAGG
gi|104127                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-T-G-AG-GGC-TT-ACA-CC-AA----------------------T-ATTT--TCTG-AC-CAGG
gi|104128                     : GAGC-C-T-G----TC-TTCC-A-T-CAA-GG--T-CG-T--AG-ACC-T-TA-CGACC----TAAT-T-T-A-GGCTAGT-C-A-G-AGTGGC-TT-ACG-CC-AAA-TA-TT-TT-AG-TCGGGCG-T-AATT--TCTG-AC-
gi|104129                     : GAGT-C-TTG----TT-T--C-A-T-CAAAGG--TTCGAT--AG-AC--T-AT-CGCC-----TAAT-T-T-TAAGCTAAT-C-A-G-AG-GGC-TT-ACG-CC-AA--TAGTT-T--AG-TCGGGCG-T-TTTT--TCTGTAC-CAGG
gi|104130                     : GAGC-C-T-G----TTCT--CTA-T-CAAAGG--T-CG-TTGAG-AC--TATA-CGCC-----TAATCT-T-AAGGCTAGT-C-ACGTAG-GGC-TTTACA-CCCAA--TA-TT-TCTAG-TCGGGCG-T-ATTT--TCTG-ACGCAGG
gi|104131                     : GAGC-C-T-GGGTGTT-G--C-A-TTCAAAGGGTC-CG-T--AGGAC--T-TA-CGCCC----TAATGT-T-AAGGCTAGTTC-A-G-AG-GGC-TT-ACGCCC-AA--TATTT-T--AG-TCGGGCG-TGATTTTGTCTG-AC-
gi|104132                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--A---------A-CGCCCAGCGTAAC-T-T-TACGCCAG
gi|104133                     : GAGCAC-T-G----TT-T------T-CAAAGG--T-C--------------------------TAAT-T-A-AAGGCTAGT-C-A-G-AG-GGC-TTAACG-CCAAA--TA-TT-T--AG-TCGGGCGAT-ATTT--TCTG-AC-CAG
gi|104134                     :  AGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-
gi|104135                     :   GC-C-TAG----TT-T--C-A-T-CAAAAG--T-CGCT--AG-AC--T-TA-CGCCC----TAAT-T-TGAAGGCTAGT-C-A-G-AA-GGCATT-ACG-CC-AATTTA-TT-T--AG-TCGG--G-T-ATTT--TCTG-AC-
gi|104136                     :     -C-T-G----TT-T--C-A-T--AAAGG--T-CG-T--AG-AC--T--A-CGCCC----TA---T-T-AAGG-TAGT-C-A-G-AG-GG--TT-ACG-CC-AA--TA-TT-T--AG-TCGG--G-T-ATTT--TCTG-CT-CAGG
gi|104137                     :                               GG--T-CG-T--AG-ACCTT-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-G-A-GG-GGC-TT-ACG--C-AA--TA-TT-T--AG-TCGGGCG-T-A-TT--TCTG-





Alignments
lowQualScore                  :     2 2 4 5555  2 33 2 2 2      33 4  4 33  4  55 2  2     7777    4 2 2         2 2 2 2  2   2  4   2  4  55  7  2 55  2       2 2    33    2  2    
lowQualScore                  :     . . . ....  . .. . . .      .. .  . ..  .  .. .  .     ....    . . .         . . . .  .   .  .   .  .  ..  .  . ..  .       . .    ..    .  .    
lowQualScore                  :     4 4 7 0000  4 22 4 4 4      11 4  4 11  4  33 2  2     8888    4 2 2         4 4 4 4  4   4  7   4  7  66  1  4 66  4       4 4    22    4  7    
consensus                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
Reference ( family-886 )      : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104120                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104121                     : GAGC-CAT-G----TT----C-A-T-CAAAGG--T-CG-T---G-AC--T-TA-C-CCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA---A-TT-T--AG-TCGGGCG-G-ATTT--TCTG-AC-CAG
gi|104122                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104123                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGTG-T-ATTT--TCTG-AC-CAGG
gi|104124                     : GAGC-C-T-G----TT-T--C-ACT-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCCCC--TAAT-TCT-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TATTT-T--AG-TCGGGCG-T-ATTT--TTTG-AC-CAGG
gi|104125                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--TTCG-T--AGGAC--T-TAACGCCC----TAAT-T-T-AAGGCTAGT-CAA-G-AG-GGC-TT-ACG-CC-AA--TA-TTAT--AGCTCGGGCG-T-A-TT--TCTG-AC-CAGG
gi|104126                     : GAGC-C-T-G----TT-T--C-A-T---AAGG--T--G----AG-AC--T-TA-CGCCC----TAAT-T---AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TC-G-AC-CAGG
gi|104127                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-T-G-AG-GGC-TT-ACA-CC-AA----------------------T-ATTT--TCTG-AC-CAGG
gi|104128                     : GAGC-C-T-G----TC-TTCC-A-T-CAA-GG--T-CG-T--AG-ACC-T-TA-CGACC----TAAT-T-T-A-GGCTAGT-C-A-G-AGTGGC-TT-ACG-CC-AAA-TA-TT-TT-AG-TCGGGCG-T-AATT--TCTG-AC-
gi|104129                     : GAGT-C-TTG----TT-T--C-A-T-CAAAGG--TTCGAT--AG-AC--T-AT-CGCC-----TAAT-T-T-TAAGCTAAT-C-A-G-AG-GGC-TT-ACG-CC-AA--TAGTT-T--AG-TCGGGCG-T-TTTT--TCTGTAC-CAGG
gi|104130                     : GAGC-C-T-G----TTCT--CTA-T-CAAAGG--T-CG-TTGAG-AC--TATA-CGCC-----TAATCT-T-AAGGCTAGT-C-ACGTAG-GGC-TTTACA-CCCAA--TA-TT-TCTAG-TCGGGCG-T-ATTT--TCTG-ACGCAGG
gi|104131                     : GAGC-C-T-GGGTGTT-G--C-A-TTCAAAGGGTC-CG-T--AGGAC--T-TA-CGCCC----TAATGT-T-AAGGCTAGTTC-A-G-AG-GGC-TT-ACGCCC-AA--TATTT-T--AG-TCGGGCG-TGATTTTGTCTG-AC-
gi|104132                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--A---------A-CGCCCAGCGTAAC-T-T-TACGCCAG
gi|104133                     : GAGCAC-T-G----TT-T------T-CAAAGG--T-C--------------------------TAAT-T-A-AAGGCTAGT-C-A-G-AG-GGC-TTAACG-CCAAA--TA-TT-T--AG-TCGGGCGAT-ATTT--TCTG-AC-CAG
gi|104134                     :  AGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-
gi|104135                     :   GC-C-TAG----TT-T--C-A-T-CAAAAG--T-CGCT--AG-AC--T-TA-CGCCC----TAAT-T-TGAAGGCTAGT-C-A-G-AA-GGCATT-ACG-CC-AATTTA-TT-T--AG-TCGG--G-T-ATTT--TCTG-AC-
gi|104136                     :     -C-T-G----TT-T--C-A-T--AAAGG--T-CG-T--AG-AC--T--A-CGCCC----TA---T-T-AAGG-TAGT-C-A-G-AG-GG--TT-ACG-CC-AA--TA-TT-T--AG-TCGG--G-T-ATTT--TCTG-CT-CAGG
gi|104137                     :                               GG--T-CG-T--AG-ACCTT-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-G-A-GG-GGC-TT-ACG--C-AA--TA-TT-T--AG-TCGGGCG-T-A-TT--TCTG-


blockSeqs                     :     A A T GGTG  C TC T C T      GT T  A TG  G  CT A  A     AGCG    C C G         T A C T  T   A  T   C  C  TT  T  A CT  C       A G    TG    T  G
blockSeqs                     :     . . A .     . .  . . .      .  T  C .   G  C  .  .     CC      G . .         . . . .  .   .  A   .  A  A   G  . T   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   T  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .  .
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .   
blockSeqs                     :     . . . .     . .  . . .      .  .  . .   .  .  .  .     .       . . .         . . . .  .   .  .   .  .  .   .  . .   .       . .    .     .   
blockSeqs                     :                                 .  .  . .   .  .  .  .     .       . . .                                                                         


blockSeqCons                  : 
originalCons                  : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
finalCons                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG





Alignments
lowQualScore                  :     2 2 4 5555  2 33 2 2 2      33 4  4 33  4  55 2  2     7777    4 2 2         2 2 2 2  2   2  4   2  4  55  7  2 55  2       2 2    33    2  2    
lowQualScore                  :     . . . ....  . .. . . .      .. .  . ..  .  .. .  .     ....    . . .         . . . .  .   .  .   .  .  ..  .  . ..  .       . .    ..    .  .    
lowQualScore                  :     4 4 7 0000  4 22 4 4 4      11 4  4 11  4  33 2  2     8888    4 2 2         4 4 4 4  4   4  7   4  7  66  1  4 66  4       4 4    22    4  7    
consensus                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
Reference ( family-886 )      : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104120                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104121                     : GAGC-CAT-G----TT----C-A-T-CAAAGG--T-CG-T---G-AC--T-TA-C-CCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA---A-TT-T--AG-TCGGGCG-G-ATTT--TCTG-AC-CAG
gi|104122                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-AC-CAGG
gi|104123                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGTG-T-ATTT--TCTG-AC-CAGG
gi|104124                     : GAGC-C-T-G----TT-T--C-ACT-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCCCC--TAAT-TCT-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TATTT-T--AG-TCGGGCG-T-ATTT--TTTG-AC-CAGG
gi|104125                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--TTCG-T--AGGAC--T-TAACGCCC----TAAT-T-T-AAGGCTAGT-CAA-G-AG-GGC-TT-ACG-CC-AA--TA-TTAT--AGCTCGGGCG-T-A-TT--TCTG-AC-CAGG
gi|104126                     : GAGC-C-T-G----TT-T--C-A-T---AAGG--T--G----AG-AC--T-TA-CGCCC----TAAT-T---AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TC-G-AC-CAGG
gi|104127                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-T-G-AG-GGC-TT-ACA-CC-AA----------------------T-ATTT--TCTG-AC-CAGG
gi|104128                     : GAGC-C-T-G----TC-TTCC-A-T-CAA-GG--T-CG-T--AG-ACC-T-TA-CGACC----TAAT-T-T-A-GGCTAGT-C-A-G-AGTGGC-TT-ACG-CC-AAA-TA-TT-TT-AG-TCGGGCG-T-AATT--TCTG-AC-
gi|104129                     : GAGT-C-TTG----TT-T--C-A-T-CAAAGG--TTCGAT--AG-AC--T-AT-CGCC-----TAAT-T-T-TAAGCTAAT-C-A-G-AG-GGC-TT-ACG-CC-AA--TAGTT-T--AG-TCGGGCG-T-TTTT--TCTGTAC-CAGG
gi|104130                     : GAGC-C-T-G----TTCT--CTA-T-CAAAGG--T-CG-TTGAG-AC--TATA-CGCC-----TAATCT-T-AAGGCTAGT-C-ACGTAG-GGC-TTTACA-CCCAA--TA-TT-TCTAG-TCGGGCG-T-ATTT--TCTG-ACGCAGG
gi|104131                     : GAGC-C-T-GGGTGTT-G--C-A-TTCAAAGGGTC-CG-T--AGGAC--T-TA-CGCCC----TAATGT-T-AAGGCTAGTTC-A-G-AG-GGC-TT-ACGCCC-AA--TATTT-T--AG-TCGGGCG-TGATTTTGTCTG-AC-
gi|104132                     : GAGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--A---------A-CGCCCAGCGTAAC-T-T-TACGCCAG
gi|104133                     : GAGCAC-T-G----TT-T------T-CAAAGG--T-C--------------------------TAAT-T-A-AAGGCTAGT-C-A-G-AG-GGC-TTAACG-CCAAA--TA-TT-T--AG-TCGGGCGAT-ATTT--TCTG-AC-CAG
gi|104134                     :  AGC-C-T-G----TT-T--C-A-T-CAAAGG--T-CG-T--AG-AC--T-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-A-G-AG-GGC-TT-ACG-CC-AA--TA-TT-T--AG-TCGGGCG-T-ATTT--TCTG-
gi|104135                     :   GC-C-TAG----TT-T--C-A-T-CAAAAG--T-CGCT--AG-AC--T-TA-CGCCC----TAAT-T-TGAAGGCTAGT-C-A-G-AA-GGCATT-ACG-CC-AATTTA-TT-T--AG-TCGG--G-T-ATTT--TCTG-AC-
gi|104136                     :     -C-T-G----TT-T--C-A-T--AAAGG--T-CG-T--AG-AC--T--A-CGCCC----TA---T-T-AAGG-TAGT-C-A-G-AG-GG--TT-ACG-CC-AA--TA-TT-T--AG-TCGG--G-T-ATTT--TCTG-CT-CAGG
gi|104137                     :                               GG--T-CG-T--AG-ACCTT-TA-CGCCC----TAAT-T-T-AAGGCTAGT-C-G-A-GG-GGC-TT-ACG--C-AA--TA-TT-T--AG-TCGGGCG-T-A-TT--TCTG-