lowQualScore : 2222222222222222222222222222 22222 11
lowQualScore : 3 44 9999999999999999999999999999 33 22222 2 4 2 2 22 444 99 333 2
lowQualScore : . .. ............................ .. ..... . . . . .. ... .. ... .
lowQualScore : 1 22 8888888888888888888888888888 22 00000 4 7 4 4 66 111 77 888 9
consensus : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG--C--TCT-GCTCGTG-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
Reference ( gi|2220 ) : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG--A--TCT-GCTCGTG-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2218 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATAATTTTT--CG--C--TCT-GCTTGTG-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-ATTATATAT
gi|2222 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG--C--TCT-GCTTGTG-ATACCC-TTGTAC-GG-AGTCTTTA--TT---TTAAAAA-T-A-TAT
gi|2221 : ATGCAT--AAAACACAT--A------GTT-A-----------------ATAATTTTT--CG--C--TCT-GCTCGTGGATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAACT-A-TATATAT
gi|2219 : ATGCATT-AGAACACAT--A------GTT-------------------ATAATTTTT--CG--CT-TCT-GCTTGTG-ATACCCTTTGTAC--G-AGTCTTTAT-TT---T--AAAA-TAA-TATATAT
gi|2224 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG------CT-GCTC-TG-ATA-CCTTTGTAC-AG-AGTCTTTA--TT-------GAA-T-A-TATAat
gi|2223 : ATGTATT-AAAACACAT--AATGATGGTT-A-----------------ATCAATTTT--CG--C--TCT-GCTCGTG-ATACACTTTGTAC-GC-AGTCTTTAT-TT---T--AAAA-
gi|2227 : ATGCATT-GGGACATATGCA------TTT-AGGAACAAC---------ATCATTTTT--CG--C--TCC-GCTCGCT-ATACCCTTTATAT-GG-AGT-------TT---T--AAAA-a
gi|2226 : ATGCATT-GGAACACAT--A------CTT-ATATATTTAGGAAGAAACATAATTTTT--CG----------CTC----ATACCCTTTATAC-GG-AGTTTTTATTTT---T--AAAA-A-A-TATaaatgt
gi|2228 : ATACATTTAGAAAA--------------T-A-----------------ATAATTTTT-----------T-GCTCG---ATACCCTTTATACCGG-AGTTTTTA--TT---T--AAAA-A-A-TACAT
gi|2229 : TGCATT-AGAACACAT--A------GT--A-----------------ATCATTTTTTTCG--A--TCTTGCTCGTGGATACCCTTTGTAC-G--AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2230 : TGCATT-AGAACAC-T--A------GTTTA-----------------ATCATTTTT--CG--C--TCT-GCT---G-AT--CCTTTGTAC-AG-AGTCTTTA--TT---T--GAAA-T-A-TATATAT
gi|2231 : CAAT-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CG--C--TCT-GCTCGT--ATACCCTTTGTAC-GG-AG-CTTTA--TT---T---TAA-T-A-GATATATat
gi|2232 : T-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CG--C--TCT-GCTCGTG-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAA-T-A-GATATAT
gi|2234 : -----------------ATCATTTTT--CG--C--TCT-GCTCGTG-ATACCCTTTATGC-GG-AGTTTTTA--TT---TCAAAAA-A-A-TAT
gi|2233 : -----------------ATCATTTTG--CGCCG--TC--GCTTGTG-GAACCCTT-GTAC-GGGAGTCTTTA--TTTTAT--AAAA-A-A-TATAT
gi|2225 : TTTTT--CA--A--TCT-GCTTGTG-ATACCCTTTATAC-GG-AGTTTTTA--TT---T--
gi|2235 : atgcaatggaaacatgtatataagaacattttTTT--TG--AACTCT-GTTTGTG-ATACACTTTATAC-AG-AATTTTTA--TT---TTAAAAA-T-A-
Alignments
lowQualScore : 1111111 22222222222222222 11
lowQualScore : 2 33 0000000 2 55555555555555555 33 55 2 0 2 2 2 2 11 333 99 333 2
lowQualScore : . .. ....... . ................. .. .. . . . . . . .. ... .. ... .
lowQualScore : 9 99 7777777 9 00000000000000000 11 33 2 9 2 2 2 2 99 999 22 000 7
consensus : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
Reference ( family-884 ) : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2218 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTTGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-ATTATATAT
gi|2219 : ATGCATT-AGAACACAT--A------GTT-------------------ATAATTTTT--CGCT-TCT-GCTTGT-G-ATACCCTTTGTAC--G-AGTCTTTAT-TT---T--AAAA-TAA-TATATAT
gi|2220 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGA--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATATat
gi|2221 : ATGCAT--AAAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTCGTGG-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAACT-A-TATATAT
gi|2222 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTTGT-G-ATACCC-TTGTAC-GG-AGTCTTTA--TT---TTAAAAA-T-A-TAT
gi|2223 : ATGTATT-AAAACACAT--AATGATGGTT-A-----------------ATCAATTTT--CGC--TCT-GCTCGT-G-ATACACTTTGTAC-GC-AGTCTTTAT-TT---T--AAAA-
gi|2224 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG----CT-GCTC-T-G-ATA-CCTTTGTAC-AG-AGTCTTTA--TT-------GAA-T-A-TATAa
gi|2225 : TTTTT--CAA--TCT-GCTTGT-G-ATACCCTTTATAC-GG-AGTTTTTA--TT---T--
gi|2226 : atgcaatggaaacatgtatataagaacattttATGCATT-GGAACACAT--A------CTT-ATATATTTAGGAAGAAACATAATTTTT--CGC--TC-----------ATACCCTTTATAC-GG-AGTTTTTATTTT---T--AAAA-A-A-TAT
gi|2227 : ATGCATT-GGGACATATGCA------TTT-AGGAACAAC---------ATCATTTTT--CGC--TCC-GCTCGC-T-ATACCCTTTATAT-GG-AGT-------TT---T--AAAA-
gi|2228 : ATACATTTAGAAAA--------------T-A-----------------ATAATTTTT--TGC--TC---------G-ATACCCTTTATACCGG-AGTTTTTA--TT---T--AAAA-A-A-TACATaaatgt
gi|2229 : TGCATT-AGAACACAT--A------GT--A-----------------ATCATTTTTTTCGA--TCTTGCTCGT-GGATACCCTTTGTAC-G--AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2230 : TGCATT-AGAACAC-T--A------GTTTA-----------------ATCATTTTT--CGC--TCT-GCT----G-AT--CCTTTGTAC-AG-AGTCTTTA--TT---T--GAAA-T-A-TATATAT
gi|2231 : CAAT-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT---ATACCCTTTGTAC-GG-AG-CTTTA--TT---T---TAA-T-A-GATATATat
gi|2232 : T-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAA-T-A-GATATAT
gi|2233 : -----------------ATCATTTTG--CGCCGTC--GCTTGT-G-GAACCCTT-GTAC-GGGAGTCTTTA--TTTTAT--AAAA-A-A-TATAT
gi|2234 : -----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTATGC-GG-AGTTTTTA--TT---TCAAAAA-A-A-TAT
gi|2235 : -----------------ATAATTTTG--AAC--TCT-GTTTGT-G-ATACACTTTATAC-AG-AATTTTTA--TT---TTAAAAA-T-A-
Alignments
lowQualScore : 1111111 22222222222222222 11
lowQualScore : 2 33 0000000 2 55555555555555555 33 55 2 0 2 2 2 2 11 333 99 333 2
lowQualScore : . .. ....... . ................. .. .. . . . . . . .. ... .. ... .
lowQualScore : 9 99 7777777 9 00000000000000000 11 33 2 9 2 2 2 2 99 999 22 000 7
consensus : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
Reference ( family-884 ) : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2218 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTTGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-ATTATATAT
gi|2219 : ATGCATT-AGAACACAT--A------GTT-------------------ATAATTTTT--CGCT-TCT-GCTTGT-G-ATACCCTTTGTAC--G-AGTCTTTAT-TT---T--AAAA-TAA-TATATAT
gi|2220 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGA--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATATat
gi|2221 : ATGCAT--AAAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTCGTGG-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAACT-A-TATATAT
gi|2222 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTTGT-G-ATACCC-TTGTAC-GG-AGTCTTTA--TT---TTAAAAA-T-A-TAT
gi|2223 : ATGTATT-AAAACACAT--AATGATGGTT-A-----------------ATCAATTTT--CGC--TCT-GCTCGT-G-ATACACTTTGTAC-GC-AGTCTTTAT-TT---T--AAAA-
gi|2224 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG----CT-GCTC-T-G-ATA-CCTTTGTAC-AG-AGTCTTTA--TT-------GAA-T-A-TATAa
gi|2225 : TTTTT--CAA--TCT-GCTTGT-G-ATACCCTTTATAC-GG-AGTTTTTA--TT---T--
gi|2226 : atgcaatggaaacatgtatataagaacattttATGCATT-GGAACACAT--A------CTT-ATATATTTAGGAAGAAACATAATTTTT--CGC--TC-----------ATACCCTTTATAC-GG-AGTTTTTATTTT---T--AAAA-A-A-TAT
gi|2227 : ATGCATT-GGGACATATGCA------TTT-AGGAACAAC---------ATCATTTTT--CGC--TCC-GCTCGC-T-ATACCCTTTATAT-GG-AGT-------TT---T--AAAA-
gi|2228 : ATACATTTAGAAAA--------------T-A-----------------ATAATTTTT--TGC--TC---------G-ATACCCTTTATACCGG-AGTTTTTA--TT---T--AAAA-A-A-TACATaaatgt
gi|2229 : TGCATT-AGAACACAT--A------GT--A-----------------ATCATTTTTTTCGA--TCTTGCTCGT-GGATACCCTTTGTAC-G--AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2230 : TGCATT-AGAACAC-T--A------GTTTA-----------------ATCATTTTT--CGC--TCT-GCT----G-AT--CCTTTGTAC-AG-AGTCTTTA--TT---T--GAAA-T-A-TATATAT
gi|2231 : CAAT-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT---ATACCCTTTGTAC-GG-AG-CTTTA--TT---T---TAA-T-A-GATATATat
gi|2232 : T-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAA-T-A-GATATAT
gi|2233 : -----------------ATCATTTTG--CGCCGTC--GCTTGT-G-GAACCCTT-GTAC-GGGAGTCTTTA--TTTTAT--AAAA-A-A-TATAT
gi|2234 : -----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTATGC-GG-AGTTTTTA--TT---TCAAAAA-A-A-TAT
gi|2235 : -----------------ATAATTTTG--AAC--TCT-GTTTGT-G-ATACACTTTATAC-AG-AATTTTTA--TT---TTAAAAA-T-A-
blockSeqs : T GC ATGATGG T TATATTTAGGAAGAAAC TT CG T G G C G TT TTA TA TA .
blockSeqs : . . G . GGAACAAC . T . . . . . T . CA CT .
blockSeqs : . . G . . . . . . . . . T . TA T .
blockSeqs : . . G . . . . . . . . . T . . T .
blockSeqs : . . G . . . . . . . . . T . . T .
blockSeqs : . . G . . . . . . . . . . . . A .
blockSeqs : . . C . . . . . . . . . . . . A .
blockSeqs : . . T . . . . . . . . . . . . T .
blockSeqs : . . G . . . . . . . . . . . . T .
blockSeqs : . . G . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
finalCons : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
Alignments
lowQualScore : 1111111 22222222222222222 11
lowQualScore : 2 33 0000000 2 55555555555555555 33 55 2 0 2 2 2 2 11 333 99 333 2
lowQualScore : . .. ....... . ................. .. .. . . . . . . .. ... .. ... .
lowQualScore : 9 99 7777777 9 00000000000000000 11 33 2 9 2 2 2 2 99 999 22 000 7
consensus : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
Reference ( family-884 ) : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2218 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTTGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-ATTATATAT
gi|2219 : ATGCATT-AGAACACAT--A------GTT-------------------ATAATTTTT--CGCT-TCT-GCTTGT-G-ATACCCTTTGTAC--G-AGTCTTTAT-TT---T--AAAA-TAA-TATATAT
gi|2220 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGA--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTA--TT---T--AAAA-T-A-TATATATat
gi|2221 : ATGCAT--AAAACACAT--A------GTT-A-----------------ATAATTTTT--CGC--TCT-GCTCGTGG-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAACT-A-TATATAT
gi|2222 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CGC--TCT-GCTTGT-G-ATACCC-TTGTAC-GG-AGTCTTTA--TT---TTAAAAA-T-A-TAT
gi|2223 : ATGTATT-AAAACACAT--AATGATGGTT-A-----------------ATCAATTTT--CGC--TCT-GCTCGT-G-ATACACTTTGTAC-GC-AGTCTTTAT-TT---T--AAAA-
gi|2224 : ATGCATT-AGAACACAT--A------GTT-A-----------------ATCATTTTT--CG----CT-GCTC-T-G-ATA-CCTTTGTAC-AG-AGTCTTTA--TT-------GAA-T-A-TATAa
gi|2225 : TTTTT--CAA--TCT-GCTTGT-G-ATACCCTTTATAC-GG-AGTTTTTA--TT---T--
gi|2226 : atgcaatggaaacatgtatataagaacattttATGCATT-GGAACACAT--A------CTT-ATATATTTAGGAAGAAACATAATTTTT--CGC--TC-----------ATACCCTTTATAC-GG-AGTTTTTATTTT---T--AAAA-A-A-TAT
gi|2227 : ATGCATT-GGGACATATGCA------TTT-AGGAACAAC---------ATCATTTTT--CGC--TCC-GCTCGC-T-ATACCCTTTATAT-GG-AGT-------TT---T--AAAA-
gi|2228 : ATACATTTAGAAAA--------------T-A-----------------ATAATTTTT--TGC--TC---------G-ATACCCTTTATACCGG-AGTTTTTA--TT---T--AAAA-A-A-TACATaaatgt
gi|2229 : TGCATT-AGAACACAT--A------GT--A-----------------ATCATTTTTTTCGA--TCTTGCTCGT-GGATACCCTTTGTAC-G--AGTCTTTA--TT---T--AAAA-T-A-TATATAT
gi|2230 : TGCATT-AGAACAC-T--A------GTTTA-----------------ATCATTTTT--CGC--TCT-GCT----G-AT--CCTTTGTAC-AG-AGTCTTTA--TT---T--GAAA-T-A-TATATAT
gi|2231 : CAAT-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT---ATACCCTTTGTAC-GG-AG-CTTTA--TT---T---TAA-T-A-GATATATat
gi|2232 : T-AGA-TACAT--G--------T-A-----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTGTAC-GG-AGTCTTTAT-TT---T--AAAA-T-A-GATATAT
gi|2233 : -----------------ATCATTTTG--CGCCGTC--GCTTGT-G-GAACCCTT-GTAC-GGGAGTCTTTA--TTTTAT--AAAA-A-A-TATAT
gi|2234 : -----------------ATCATTTTT--CGC--TCT-GCTCGT-G-ATACCCTTTATGC-GG-AGTTTTTA--TT---TCAAAAA-A-A-TAT
gi|2235 : -----------------ATAATTTTG--AAC--TCT-GTTTGT-G-ATACACTTTATAC-AG-AATTTTTA--TT---TTAAAAA-T-A-