lowQualScore : 11 222222222 111111 11111
lowQualScore : 5 3 444 9 33 444 0 2 2 2 33 5 777777 00 3 5 5 222222222 2 5555 2 4 5555 000000 2 2 5555555 00000 2 2 444 66666 5555 88
lowQualScore : . . ... . .. ... . . . . .. . ...... .. . . . ......... . .... . . .... ...... . . ....... ..... . . ... ..... .... ..
lowQualScore : 4 0 777 0 44 444 8 5 5 5 44 0 222222 88 4 0 0 999999999 5 0000 4 7 3333 222222 5 5 9999999 66666 7 7 777 77777 7777 22
consensus : AATTGACCAATGAGAACG---CGTNT--TCC---ATTTCGGGTG-AT-TGAG-G--AAAAGTTC-CT------G-TGAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--T-A-TATAT----T--GCCG-A-G-G-C-AA---A-----CAAATATT----AG-GTATTTTTA
Reference ( gi|134250 ) : AATTGACCAATCAGAATG---CGTAT--TCC---ATTTCGGGTG-AT-TGAG-G--AAAAGTTC-CT------G-CGAT-TCAA-AAACGATG-------G-AAAA----T-GCATTAT-TTCT----TC---A--T-A-TATAT----T--GCCG-A-G-G-C-AA---A-----CAAATATT----AG-ATATTTTTA
gi|134251 : AATTGACCAATCAGAATG---CGTAT--ACC---ATTTCGAGTG-AT-TAAG-G--AAAAGTTC-CT------G-TGAT-TCAA-AAACGAAA-------G-AAAA----T-GCATTAT-TTCT----TC---A--T-A-TATAT----T--GCAG-A-G-A-C-AA---A-----CAAATATT----AG-GTATTATTA
gi|134252 : AATTGACCAATCAGAATG---CGTAT--TCC---ATTTCGAGTG-AA-TGAG-G--AAAAGTTC-CT------G-TGAT-TCAA-AAATGAAA-------G-AAAA----T-GCATCAT-TTCT----AC---A--T-A-TATAT----T--GCCG-A-G-G-C-AA---A-----CAAATATA----AA-GTATTCTTA
gi|134248 : AATTGACCAATGAGAACG---CGTCT--TCC---AGATTGGTTG-AT-TGAG-G--AAAAGTTC-CT------G-TGGT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TCTTAA--T-A-TATGT----T--GCCG-G-T-G-C-AA---A-----CAAATATT----AG-GTATTTTTA
gi|134253 : AATTGACCAATCAGAAAG---CGTTT--ACT---ATTTCAGGTG-AC-TGGG-G--AAAAGTTC-CT------G-TAAT-TAAA-AAACGATA-------G-AAAA----T-GCATTGG-TTCT----TC---A--T-A-TATAT----T--GCCG-A-A-G-G-AA---A-----CAAATATT----AG-GTATTTTTA
gi|134254 : AATTGACCAATCGGAATG---CGT-T--TCC---ATT-CGGGTG-AT-TGAG-G--AAAA-TTA-CT------G-TGAT-TCAA-AAACGAAA-------G-AAAA----T-GCA-TAT-TTCT----TC---A--T-A-TATA-----T--GCCG-A-G-G-C-AA---A-----CAAATATT----AG-GTTTTTTT
gi|134256 : AATTGACCAAAGAAAACG---CGTCT--TCC---ATTTTGAATG-AT-TTAG-G--AAAAGTAC-CT------G-TGGT-TCAA-AAACGATA-------G-AAAA----T-GCATTGC-TTCT----TC---A--C-A-TACAT---------------------A---A-----TAAATATT----
gi|134255 : AATTGACCAATCAGAA-G---CGT-T--TCC---A-TTCGGGTG-A--TGAG-G--AAAAG-TA-TT------G-GGGCATC-A-AAACGA-A-------G-AAAA-------CATTA---TCT----TCA--A--T-A--ATAT--------CCG-A---G-C--A---A-----CAAATA---------GTATTTTT
gi|134257 : AATTGACCAAATGGAATGAAATGCATCGTCC---ATTTTGGGTG-AT-TGTG-G--AAAAGTTC-CC------G-TGGT-CCAG-AAACAATA-------G-AAAA----T-ACGGTAT-
gi|134258 : AATTGACCAATGAGAACG---TGTTT--TGG---ATGTTGATTG-AT-TGAGCG--AAAA--TA-CT------G-TG-C-TCAA-AAACGAT--------A-ACAA----TAGCATTGC-TGCT----TC---T--G-G-TACAT----T--GATGCATG-C-C-AA---A-----CAAATATT----GGTATATTTT
gi|134249 : AATTGACCAATGAGAACG---CGTCT--TCCCAGATT---GATG-ATCTGAG-GGAAGAAGTTT-CTTTGGCGG-TGAT-GAAG-AGACGATACGTAGACG-ACAG----T-GCATTAT-TTCTGTGCTT---A--T-A--ATATGCTGT--GCCG-A-GTGCC-AACGCA-----CAAATATT----Aa
gi|134259 : TTGACCAATGAGAACG---CGTCT--TTC---AGGTTGGTTG-AT-TGAG-G--AAAAGTTC-CT------G-TGGT-TCAA-AAACGATA-------A-AAAT----T-GCATTAT-TTCT------------T-A-TACGT----T--GCCG-G-T-G-C-AA---A-----CAAATATT----AG-GTATTTTTAtgggggttagtattttta
gi|134260 : TTGAACGATGAGAACG---CGTCT--TCC---AGGTTGGG---AA-TGAG-G--AAAAGTTC-CT------G--GTTATCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---T--T-G-TACGT----T--GCCA-G-T-G-C-AA---A-----CAAATATT----AG-G-GTTTTT
gi|134261 : ATCAA--AAAATG---CGTAT--TCC---ATTTCGG-TG-AT-TGAG----AATAGTTCTCT------G-TGAT-TCAATAAACGA-A-------G-AAAA----T-GCATCATGTTCT----TC---AA-T-A-TATAT----T--GCCG-A-G-G-C-AA---A-----CA---ATT----AT-ATATTT
gi|134262 : AATGAGAACG---CATAT--TCC---ATTTTAGATG-AT-TGAG-G--ACAAGTCC-TT------G-AG-C-TCA------GATA-------GTAAAAAGTTT-TTATTGC-TTCT----TC---A--T-A-CTCAT----T--TTCG-G-T-G-C-AA---ACACTGCAAACAGTCATAAG-ATATTTTTA
gi|134263 : AAAATG---CGTAT--TCC---ATTTC-GGTGAAT-TG-G-C--GAAAGTTCTCT------GTTGAT-TCAATAAACGA-A-------G-AAAA----T-GCATTATGTTCT----TC---AACTAA-TATAT----TGGGCCG-A-G-G-C-AA---A-----CAAATA-T----AG--TATTTTTA
gi|134264 : T--TCT---ATTTTGGGTG-AT-TGAG-G--AAAAGTTC-CT------G-CGAT-TTAT-AAACGGAA-------G-AAAA----T-GCATTGC-TCCC----TC---A--T-ACTATGT----T--
gi|134265 : AA----T-GCATTAT-TTCT----TC---T--T-A-TATGT----T--GCCG---G-T-CGAA---A-----CAAATATC----AG-GTATTTTtcgatg
Alignments
lowQualScore : 1111111111111
lowQualScore : 777777 1 1 5 444 3 222 2 33 4 999999 2 1 2 4 5 7777777 2 4444 2 4 5555 666666 4 2 5555 33 88888 2 2 444 66666 2222222222222 2
lowQualScore : ...... . . . ... . ... . .. . ...... . . . . . ....... . .... . . .... ...... . . .... .. ..... . . ... ..... ............. .
lowQualScore : 777777 7 7 9 111 1 555 4 22 7 111111 4 2 4 7 8 6666666 4 7777 2 4 0000 777777 7 4 0000 44 88888 5 5 444 22222 4444444444444 7
consensus : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
Reference ( family-883 ) : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134248 : AATTGACCAA------TGAGAACGCGTCTTCC---AGATTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TCTTAA--TA-T-ATGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134249 : AATTGACCAA------TGAGAACGCGTCTTCCCAGATT---GATGA-TCTGAG-GGAAGAAGTTT-CTTTGGCGGT-GAT-GAAG-AGACGATACGTAGACG-ACAG----T-GCATTAT-TTCTGTGCTT---A--TA---ATATGCTGTG--CCG-A-GTGCC-AACGCA-----CAAATATT----ATGGGGGTTAGTAT-TTTTA
gi|134250 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TCAA-AAACGATG-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GATAT-TTTTA
gi|134251 : AATTGACCAA------TCAGAATGCGTATACC---ATTTCGAGTGA-T-TAAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CAG-A-G-A-C-AA---A-----CAAATATT----A--------GGTAT-TATTA
gi|134252 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGAGTGA-A-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAATGAAA-------G-AAAA----T-GCATCAT-TTCT----AC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATA----A--------AGTAT-TCTTA
gi|134253 : AATTGACCAA------TCAGAAAGCGTTTACT---ATTTCAGGTGA-C-TGGG-G--AAAAGTTC-CT------GT-AAT-TAAA-AAACGATA-------G-AAAA----T-GCATTGG-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-A-G-G-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134254 : AATTGACCAA------TCGGAATGCGT-TTCC---ATT-CGGGTGA-T-TGAG-G--AAAA-TTA-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCA-TAT-TTCT----TC---A--TA-T-ATA-----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTTT-TTTT
gi|134255 : AATTGACCAA------TCAGAA-GCGT-TTCC---A-TTCGGGTGA---TGAG-G--AAAAG-TA-TT------GG-GGCATC-A-AAACGA-A-------G-AAAA-------CATTA---TCT----TC---A---A-TAATAT--------CCG-A---G-C--A---A-----CAAATA----------------GTAT-TTTT
gi|134256 : AATTGACCAA------AGAAAACGCGTCTTCC---ATTTTGAATGA-T-TTAG-G--AAAAGTAC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTGC-TTCT----TC---A--CA-T-ACAT---------------------A---A-----TAAATATT----
gi|134257 : AATTGACCAAATGGAATGA-AATGCATCGTCC---ATTTTGGGTGA-T-TGTG-G--AAAAGTTC-CC------GT-GGT-CCAG-AAACAATA-------G-AAAA----T-ACGGTAT-
gi|134258 : AATTGACCAA------TGAGAACGTGTTTTGG---ATGTTGATTGA-T-TGAGCG--AAAA--TA-CT------GT-G-C-TCAA-AAACGATA---------ACAA----TAGCATTGC-TGCT----TC---T--GG-T-ACAT----TG--ATGCATG-C-C-AA---A-----CAAATATT-------------GGTATATTTTA
gi|134259 : TTGACCAA------TGAGAACGCGTCTTTC---AGGTTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------A-AAAT----T-GCATTAT-TTCT------------TA-T-ACGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134260 : TTGAACGA------TGAGAACGCGTCTTCC---AGGTTGGG--A-A-TGAG-G--AAAAGTTC-CTG-----GT-TA--TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---T--TG-T-ACGT----TG--CCA-G-T-G-C-AA---A-----CAAATATT----A--------GG-GT-TTTT
gi|134261 : ATCAA--------AAAATGCGTATTCC---ATTTCGG-TGA-T-TGAG----AATAGTTCTCT------GT-GAT-TCAATAAACGA-A-------G-AAAA----T-GCATCATGTTCT----TCA--A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CA---ATT----A--------TATAT-TT
gi|134262 : AA------TGAGAACGCATATTCC---ATTTTAGATGA-T-TGAG-G--ACAAGTCC-TT------GA-G-C-TCA------GATA-------GTAAAAAGTTT-TTATTGC-TTCT----TC---A--TA-C-TCAT----TT--TCG-G-T-G-C-AA---ACACTGCAAACAGTCATAA--------GATAT-TTTTA
gi|134263 : AAAATGCGTATTCC---ATTTCGG-TGAAT-TGGC-G--AAA-GTTCTCT------GTTGAT-TCAATAAACGA-A-------G-AAAA----T-GCATTATGTTCT----TC---AACTAAT-ATAT----TGGGCCG-A-G-G-C-AA---A-----CAAATAT--------------AGTAT-TTTTA
gi|134264 : TTCT---ATTTTGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TTAT-AAACGGAA-------G-AAAA----T-GCATTGC-TCCC----TC---A--TACT-ATGT----T
gi|134265 : AA----T-GCATTAT-TTCT----TC---T--TA-T-ATGT----TG--CCG---G-T-CGAA---A-----CAAATATC----A--------GGTAT-TTTtcgatg
Alignments
lowQualScore : 1111111111111
lowQualScore : 777777 1 1 5 444 3 222 2 33 4 999999 2 1 2 4 5 7777777 2 4444 2 4 5555 666666 4 2 5555 33 88888 2 2 444 66666 2222222222222 2
lowQualScore : ...... . . . ... . ... . .. . ...... . . . . . ....... . .... . . .... ...... . . .... .. ..... . . ... ..... ............. .
lowQualScore : 777777 7 7 9 111 1 555 4 22 7 111111 4 2 4 7 8 6666666 4 7777 2 4 0000 777777 7 4 0000 44 88888 5 5 444 22222 4444444444444 7
consensus : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
Reference ( family-883 ) : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134248 : AATTGACCAA------TGAGAACGCGTCTTCC---AGATTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TCTTAA--TA-T-ATGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134249 : AATTGACCAA------TGAGAACGCGTCTTCCCAGATT---GATGA-TCTGAG-GGAAGAAGTTT-CTTTGGCGGT-GAT-GAAG-AGACGATACGTAGACG-ACAG----T-GCATTAT-TTCTGTGCTT---A--TA---ATATGCTGTG--CCG-A-GTGCC-AACGCA-----CAAATATT----ATGGGGGTTAGTAT-TTTTA
gi|134250 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TCAA-AAACGATG-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GATAT-TTTTA
gi|134251 : AATTGACCAA------TCAGAATGCGTATACC---ATTTCGAGTGA-T-TAAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CAG-A-G-A-C-AA---A-----CAAATATT----A--------GGTAT-TATTA
gi|134252 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGAGTGA-A-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAATGAAA-------G-AAAA----T-GCATCAT-TTCT----AC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATA----A--------AGTAT-TCTTA
gi|134253 : AATTGACCAA------TCAGAAAGCGTTTACT---ATTTCAGGTGA-C-TGGG-G--AAAAGTTC-CT------GT-AAT-TAAA-AAACGATA-------G-AAAA----T-GCATTGG-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-A-G-G-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134254 : AATTGACCAA------TCGGAATGCGT-TTCC---ATT-CGGGTGA-T-TGAG-G--AAAA-TTA-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCA-TAT-TTCT----TC---A--TA-T-ATA-----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTTT-TTTT
gi|134255 : AATTGACCAA------TCAGAA-GCGT-TTCC---A-TTCGGGTGA---TGAG-G--AAAAG-TA-TT------GG-GGCATC-A-AAACGA-A-------G-AAAA-------CATTA---TCT----TC---A---A-TAATAT--------CCG-A---G-C--A---A-----CAAATA----------------GTAT-TTTT
gi|134256 : AATTGACCAA------AGAAAACGCGTCTTCC---ATTTTGAATGA-T-TTAG-G--AAAAGTAC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTGC-TTCT----TC---A--CA-T-ACAT---------------------A---A-----TAAATATT----
gi|134257 : AATTGACCAAATGGAATGA-AATGCATCGTCC---ATTTTGGGTGA-T-TGTG-G--AAAAGTTC-CC------GT-GGT-CCAG-AAACAATA-------G-AAAA----T-ACGGTAT-
gi|134258 : AATTGACCAA------TGAGAACGTGTTTTGG---ATGTTGATTGA-T-TGAGCG--AAAA--TA-CT------GT-G-C-TCAA-AAACGATA---------ACAA----TAGCATTGC-TGCT----TC---T--GG-T-ACAT----TG--ATGCATG-C-C-AA---A-----CAAATATT-------------GGTATATTTTA
gi|134259 : TTGACCAA------TGAGAACGCGTCTTTC---AGGTTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------A-AAAT----T-GCATTAT-TTCT------------TA-T-ACGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134260 : TTGAACGA------TGAGAACGCGTCTTCC---AGGTTGGG--A-A-TGAG-G--AAAAGTTC-CTG-----GT-TA--TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---T--TG-T-ACGT----TG--CCA-G-T-G-C-AA---A-----CAAATATT----A--------GG-GT-TTTT
gi|134261 : ATCAA--------AAAATGCGTATTCC---ATTTCGG-TGA-T-TGAG----AATAGTTCTCT------GT-GAT-TCAATAAACGA-A-------G-AAAA----T-GCATCATGTTCT----TCA--A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CA---ATT----A--------TATAT-TT
gi|134262 : AA------TGAGAACGCATATTCC---ATTTTAGATGA-T-TGAG-G--ACAAGTCC-TT------GA-G-C-TCA------GATA-------GTAAAAAGTTT-TTATTGC-TTCT----TC---A--TA-C-TCAT----TT--TCG-G-T-G-C-AA---ACACTGCAAACAGTCATAA--------GATAT-TTTTA
gi|134263 : AAAATGCGTATTCC---ATTTCGG-TGAAT-TGGC-G--AAA-GTTCTCT------GTTGAT-TCAATAAACGA-A-------G-AAAA----T-GCATTATGTTCT----TC---AACTAAT-ATAT----TGGGCCG-A-G-G-C-AA---A-----CAAATAT--------------AGTAT-TTTTA
gi|134264 : TTCT---ATTTTGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TTAT-AAACGGAA-------G-AAAA----T-GCATTGC-TCCC----TC---A--TACT-ATGT----T
gi|134265 : AA----T-GCATTAT-TTCT----TC---T--TA-T-ATGT----TG--CCG---G-T-CGAA---A-----CAAATATC----A--------GGTAT-TTTtcgatg
blockSeqs : ATGGAA G C C CAG A TC C GA T TTGGCG T A A T T CGTAGAC T AGTT A G GTGC AAC A A GCTG GG CATG C G CGC CACTG ATGGGGGTT A
blockSeqs : . C T A . G AT . . T G . A . T T . . . . G . AA C . . . AGT . . . . CATAA .
blockSeqs : . C T A . G T . . . . . A . . A . . . . . . A . . . . AG . . . . A .
blockSeqs : . C T A . G T . . . . . A . . A . . . . . . A . . . . AG . . . . A .
blockSeqs : . C A T . G A . . . . . A . . T . . . . . . A . . . . AG . . . . A .
blockSeqs : . C T C . G C . . . . . A . . A . . . . . . A . . . . AA . . . . A .
blockSeqs : . C C C . G T . . . . . G . . T . . . . . . A . . . . AG . . . . A .
blockSeqs : . G T T . A T . . . . . G . . T . . . . . . A . . . . GT . . . . A .
blockSeqs : . G C C . G T . . . . . G . . T . . . . . . A . . . . GT . . . . A .
blockSeqs : . G C C . T T . . . . . G . . T . . . . . . A . . . . AG . . . . A .
blockSeqs : . G C A . T T . . . . . A . . T . . . . . . T . . . . GT . . . . A .
blockSeqs : . G T A . G A . . . . . A . . T . . . . . . T . . . . AG . . . . . .
blockSeqs : . G C A . A T . . . . . A . . A . . . . . . A . . . . A . . . . . .
blockSeqs : . . T . . G T . . . . . A . . . . . . . . . A . . . . G . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : A*****
originalCons : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
finalCons : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TCA-----TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
Alignments
lowQualScore : 1111111111111
lowQualScore : 777777 1 1 5 444 3 222 2 33 4 999999 2 1 2 4 5 7777777 2 4444 2 4 5555 666666 4 2 5555 33 88888 2 2 444 66666 2222222222222 2
lowQualScore : ...... . . . ... . ... . .. . ...... . . . . . ....... . .... . . .... ...... . . .... .. ..... . . ... ..... ............. .
lowQualScore : 777777 7 7 9 111 1 555 4 22 7 111111 4 2 4 7 8 6666666 4 7777 2 4 0000 777777 7 4 0000 44 88888 5 5 444 22222 4444444444444 7
consensus : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
Reference ( family-883 ) : AATTGACCAA------TGAGAACGCGTNTTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134248 : AATTGACCAA------TGAGAACGCGTCTTCC---AGATTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TCTTAA--TA-T-ATGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134249 : AATTGACCAA------TGAGAACGCGTCTTCCCAGATT---GATGA-TCTGAG-GGAAGAAGTTT-CTTTGGCGGT-GAT-GAAG-AGACGATACGTAGACG-ACAG----T-GCATTAT-TTCTGTGCTT---A--TA---ATATGCTGTG--CCG-A-GTGCC-AACGCA-----CAAATATT----ATGGGGGTTAGTAT-TTTTA
gi|134250 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TCAA-AAACGATG-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GATAT-TTTTA
gi|134251 : AATTGACCAA------TCAGAATGCGTATACC---ATTTCGAGTGA-T-TAAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCATTAT-TTCT----TC---A--TA-T-ATAT----TG--CAG-A-G-A-C-AA---A-----CAAATATT----A--------GGTAT-TATTA
gi|134252 : AATTGACCAA------TCAGAATGCGTATTCC---ATTTCGAGTGA-A-TGAG-G--AAAAGTTC-CT------GT-GAT-TCAA-AAATGAAA-------G-AAAA----T-GCATCAT-TTCT----AC---A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CAAATATA----A--------AGTAT-TCTTA
gi|134253 : AATTGACCAA------TCAGAAAGCGTTTACT---ATTTCAGGTGA-C-TGGG-G--AAAAGTTC-CT------GT-AAT-TAAA-AAACGATA-------G-AAAA----T-GCATTGG-TTCT----TC---A--TA-T-ATAT----TG--CCG-A-A-G-G-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134254 : AATTGACCAA------TCGGAATGCGT-TTCC---ATT-CGGGTGA-T-TGAG-G--AAAA-TTA-CT------GT-GAT-TCAA-AAACGAAA-------G-AAAA----T-GCA-TAT-TTCT----TC---A--TA-T-ATA-----TG--CCG-A-G-G-C-AA---A-----CAAATATT----A--------GGTTT-TTTT
gi|134255 : AATTGACCAA------TCAGAA-GCGT-TTCC---A-TTCGGGTGA---TGAG-G--AAAAG-TA-TT------GG-GGCATC-A-AAACGA-A-------G-AAAA-------CATTA---TCT----TC---A---A-TAATAT--------CCG-A---G-C--A---A-----CAAATA----------------GTAT-TTTT
gi|134256 : AATTGACCAA------AGAAAACGCGTCTTCC---ATTTTGAATGA-T-TTAG-G--AAAAGTAC-CT------GT-GGT-TCAA-AAACGATA-------G-AAAA----T-GCATTGC-TTCT----TC---A--CA-T-ACAT---------------------A---A-----TAAATATT----
gi|134257 : AATTGACCAAATGGAATGA-AATGCATCGTCC---ATTTTGGGTGA-T-TGTG-G--AAAAGTTC-CC------GT-GGT-CCAG-AAACAATA-------G-AAAA----T-ACGGTAT-
gi|134258 : AATTGACCAA------TGAGAACGTGTTTTGG---ATGTTGATTGA-T-TGAGCG--AAAA--TA-CT------GT-G-C-TCAA-AAACGATA---------ACAA----TAGCATTGC-TGCT----TC---T--GG-T-ACAT----TG--ATGCATG-C-C-AA---A-----CAAATATT-------------GGTATATTTTA
gi|134259 : TTGACCAA------TGAGAACGCGTCTTTC---AGGTTGGTTGA-T-TGAG-G--AAAAGTTC-CT------GT-GGT-TCAA-AAACGATA-------A-AAAT----T-GCATTAT-TTCT------------TA-T-ACGT----TG--CCG-G-T-G-C-AA---A-----CAAATATT----A--------GGTAT-TTTTA
gi|134260 : TTGAACGA------TGAGAACGCGTCTTCC---AGGTTGGG--A-A-TGAG-G--AAAAGTTC-CTG-----GT-TA--TCAA-AAACGATA-------G-AAAA----T-GCATTAT-TTCT----TC---T--TG-T-ACGT----TG--CCA-G-T-G-C-AA---A-----CAAATATT----A--------GG-GT-TTTT
gi|134261 : ATCAA--------AAAATGCGTATTCC---ATTTCGG-TGA-T-TGAG----AATAGTTCTCT------GT-GAT-TCAATAAACGA-A-------G-AAAA----T-GCATCATGTTCT----TCA--A--TA-T-ATAT----TG--CCG-A-G-G-C-AA---A-----CA---ATT----A--------TATAT-TT
gi|134262 : AA------TGAGAACGCATATTCC---ATTTTAGATGA-T-TGAG-G--ACAAGTCC-TT------GA-G-C-TCA------GATA-------GTAAAAAGTTT-TTATTGC-TTCT----TC---A--TA-C-TCAT----TT--TCG-G-T-G-C-AA---ACACTGCAAACAGTCATAA--------GATAT-TTTTA
gi|134263 : AAAATGCGTATTCC---ATTTCGG-TGAAT-TGGC-G--AAA-GTTCTCT------GTTGAT-TCAATAAACGA-A-------G-AAAA----T-GCATTATGTTCT----TC---AACTAAT-ATAT----TGGGCCG-A-G-G-C-AA---A-----CAAATAT--------------AGTAT-TTTTA
gi|134264 : TTCT---ATTTTGGGTGA-T-TGAG-G--AAAAGTTC-CT------GC-GAT-TTAT-AAACGGAA-------G-AAAA----T-GCATTGC-TCCC----TC---A--TACT-ATGT----T
gi|134265 : AA----T-GCATTAT-TTCT----TC---T--TA-T-ATGT----TG--CCG---G-T-CGAA---A-----CAAATATC----A--------GGTAT-TTTtcgatg