lowQualScore : 11111
lowQualScore : 444 5555 2 00000 333 3 8888888888 444 5555 8888 1 2 2 2 55 2 5
lowQualScore : ... .... . ..... ... . .......... ... .... .... . . . . .. . .
lowQualScore : 444 4444 2 00000 333 8 3333333333 000 4444 5555 7 2 2 2 33 2 3
consensus : AATAAT---C-G--AAAT-TGT-----TG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Reference ( gi|21007 ) : AATAAT---C-A--AAAT-TGT-----TG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACAGAGATCCT
gi|21009 : AATAAT---C-A--AAAT-TGT-----TG---CAGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-C-GC--ACAA-TTACGGAGATCCT
gi|21008 : AATAAT---C-G--AAAT-TGT-----TG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-CGT-GC--ACCA-TTATGGAGATCCT
gi|21010 : AATAAT---C-G--AAAT-TGT-----TG---TGGG-A----------GTGA-A-TCACT----CC----CG-AAT-C-T-GC--ACCC-TTACCGAGATCTT
gi|21011 : AATAAC---C-G--ACAA-TGT-----TG---CGGG-A----------GTGA-A-GCACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATC
gi|21012 : AATGAT---C-G--AAAT-TGT-----TG---CGGG-A----------GTAA-A-TCACT----CC----CA-AAT-C-T-TT--ACCA-TTACGGATATCCT
gi|21014 : AATGAT---C-A--AAAA-TGT-----CA---CGGG-A----------GTGA-A-TAACT----CC----TA-CAT-T-T-GC--ACCA-TTACGAAGATCCT
gi|21017 : AATAATTTTC-A--AAATATGT-----TGTAGCAGG-A----------GTGA-A-TCACT----CC----TG-CAT-T-T-GC--ACAA-TTACGGAGATCCT
gi|21015 : AATAAT---C-G--AAAT-TGT-----TG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-T-GCA-ACCA-TTACAGAGATCCT
gi|21013 : AATGAT---T-G--AAAA-TGT-----TT---CGGA-A----------GTTA-A-TCACT----CC----CG-CAT-C-T-GC--AACA-TTACAAAAATCCT
gi|21019 : AATAAA---C-G--AAAT-TGT-----TG---AGGG-A----------GTGA-A-TTACT----CC----CG-CAT-T-T-GC--ACCC-TTA
gi|21020 : AATAAT---C-A--AACT-TGT-----TA---CGGG-G----------GTGA-A-CCGCTATCGCC----TG-CAT-C-T-GC--GGCA-TTACGGAGATACT
gi|21018 : AATAAT---T-A--AAAT-TGT-----TG---CGGA-A----------GTGA-ACTTGGTA---CC----CATCAT-C-T-GC--ACCA-TTACGGAGAACC
gi|21021 : AATAAT---CGA--AAAT-TGT-----TG---CTGG-ACGATGGAATCGTGA-AATCACT----CCGCATCG-CATAC-T-GC---CCA-TTACGGAGATC
gi|21016 : AATAAT---C-G--AAAT-TGT-----TG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-TGGCAAACCATTTACCGAGA
gi|21022 : ATAAT---C-GGTAAAT-TGT------A---CGGG-A----------GTGC-A-TCACT----CC----CG-ATT-T-T-GC--GACA--TACGGAGATCCT
gi|21023 : TAAT---G-A--AAAT--GT-----TA---TGGA-A----------GACA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21009 : AAT-TGTGCGGATG---CGGG-A----------GTGA-T-TCACT----CC----TG-CA
gi|21017 : aataatcaaaattgtAAT-TGTGCAAATG---CAGG-A----------GTGA-T-TCACT----CC----TG-Cacggagatcct
gi|21008 : aataattttcaaaatatgttgta-----TG---CGGG-A----------GTGA-T-TCACT----CC----CG-CAacggagatcct
gi|21011 : aataatcgaaattgt-----TG---CGGG-A----------GTGC-T-TCACT----CC----CG-CAtcgtgcaccattatggagatcct
gi|21010 : aataaccgacaatgt---CGGG-A----------GTGA-T-TCACT----CC----CA-CAtttgcaccattacggagatc
gi|21024 : aataatcgaaattgtTGA-A-TAACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATCCTaatctgcacccttaccgagatctt
gi|21025 : -TCACT----AC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Alignments
lowQualScore : 1111111111 1111
lowQualScore : 444 33 2 2 444 4 0000000000 4 4 6666 0000 2 2 2 2 55 2
lowQualScore : ... .. . . ... . .......... . . .... .... . . . . .. .
lowQualScore : 111 22 4 4 111 7 3333333333 4 2 6666 3333 1 1 1 1 00 1
consensus : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Reference ( family-881 ) : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21007 : AATAAT---CA--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACAGAGATCCT
gi|21008 : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-CGT-GC--ACCA-TTATGGAGATCCT
gi|21009 : AATAAT---CA--AAA-T-TGTTG---CAGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-C-GC--ACAA-TTACGGAGATCCT
gi|21010 : AATAAT---CG--AAA-T-TGTTG---TGGG-A----------GTGA-A-TCACT----CC----CG-AAT-C-T-GC--ACCC-TTACCGAGATCTT
gi|21011 : AATAAC---CG--ACA-A-TGTTG---CGGG-A----------GTGA-A-GCACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATC
gi|21012 : AATGAT---CG--AAA-T-TGTTG---CGGG-A----------GTAA-A-TCACT----CC----CA-AAT-C-T-TT--ACCA-TTACGGATATCCT
gi|21013 : AATGAT---TG--AAA-A-TGTTT---CGGA-A----------GTTA-A-TCACT----CC----CG-CAT-C-T-GC--AACA-TTACAAAAATCCT
gi|21014 : AATGAT---CA--AAA-A-TGTCA---CGGG-A----------GTGA-A-TAACT----CC----TA-CAT-T-T-GC--ACCA-TTACGAAGATCCT
gi|21015 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-T-GCA-ACCA-TTACAGAGATCCT
gi|21016 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-TGGCAAACCATTTACCGAGA
gi|21017 : AATAATTTTCA--AAA-TATGTTGTAGCAGG-A----------GTGA-A-TCACT----CC----TG-CAT-T-T-GC--ACAA-TTACGGAGATCCT
gi|21018 : AATAAT---TA--AAA-T-TGTTG---CGGA-A----------GTGA-ACTTGGTA---CC----CATCAT-C-T-GC--ACCA-TTACGGAGAACC
gi|21019 : AATAAA---CG--AAA-T-TGTTG---AGGG-A----------GTGA-A-TTACT----CC----CG-CAT-T-T-GC--ACCC-TTA
gi|21020 : AATAAT---CA--AAC-T-TGTTA---CGGG-G----------GTGA-A-CCGCTATCGCC----TG-CAT-C-T-GC--GGCA-TTACGGAGATACT
gi|21021 : AATAAT---CG--AAAAT-TGTTG---CTGG-ACGATGGAATCGTGA-AATCACT----CCGCATCG-CATAC-T-GC---CCA-TTACGGAGATC
gi|21022 : ATAAT---CGGTAAA-T-TGT-A---CGGG-A----------GTGC-A-TCACT----CC----CG-ATT-T-T-GC--GACA--TACGGAGATCCT
gi|21023 : TAAT----G--AAA-A-TGTTA---TGGA-A----------GACA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21024 : TGA-A-TAACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATCCT
gi|21025 : -TCACT----AC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Alignments
lowQualScore : 1111111111 1111
lowQualScore : 444 33 2 2 444 4 0000000000 4 4 6666 0000 2 2 2 2 55 2
lowQualScore : ... .. . . ... . .......... . . .... .... . . . . .. .
lowQualScore : 111 22 4 4 111 7 3333333333 4 2 6666 3333 1 1 1 1 00 1
consensus : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Reference ( family-881 ) : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21007 : AATAAT---CA--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACAGAGATCCT
gi|21008 : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-CGT-GC--ACCA-TTATGGAGATCCT
gi|21009 : AATAAT---CA--AAA-T-TGTTG---CAGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-C-GC--ACAA-TTACGGAGATCCT
gi|21010 : AATAAT---CG--AAA-T-TGTTG---TGGG-A----------GTGA-A-TCACT----CC----CG-AAT-C-T-GC--ACCC-TTACCGAGATCTT
gi|21011 : AATAAC---CG--ACA-A-TGTTG---CGGG-A----------GTGA-A-GCACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATC
gi|21012 : AATGAT---CG--AAA-T-TGTTG---CGGG-A----------GTAA-A-TCACT----CC----CA-AAT-C-T-TT--ACCA-TTACGGATATCCT
gi|21013 : AATGAT---TG--AAA-A-TGTTT---CGGA-A----------GTTA-A-TCACT----CC----CG-CAT-C-T-GC--AACA-TTACAAAAATCCT
gi|21014 : AATGAT---CA--AAA-A-TGTCA---CGGG-A----------GTGA-A-TAACT----CC----TA-CAT-T-T-GC--ACCA-TTACGAAGATCCT
gi|21015 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-T-GCA-ACCA-TTACAGAGATCCT
gi|21016 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-TGGCAAACCATTTACCGAGA
gi|21017 : AATAATTTTCA--AAA-TATGTTGTAGCAGG-A----------GTGA-A-TCACT----CC----TG-CAT-T-T-GC--ACAA-TTACGGAGATCCT
gi|21018 : AATAAT---TA--AAA-T-TGTTG---CGGA-A----------GTGA-ACTTGGTA---CC----CATCAT-C-T-GC--ACCA-TTACGGAGAACC
gi|21019 : AATAAA---CG--AAA-T-TGTTG---AGGG-A----------GTGA-A-TTACT----CC----CG-CAT-T-T-GC--ACCC-TTA
gi|21020 : AATAAT---CA--AAC-T-TGTTA---CGGG-G----------GTGA-A-CCGCTATCGCC----TG-CAT-C-T-GC--GGCA-TTACGGAGATACT
gi|21021 : AATAAT---CG--AAAAT-TGTTG---CTGG-ACGATGGAATCGTGA-AATCACT----CCGCATCG-CATAC-T-GC---CCA-TTACGGAGATC
gi|21022 : ATAAT---CGGTAAA-T-TGT-A---CGGG-A----------GTGC-A-TCACT----CC----CG-ATT-T-T-GC--GACA--TACGGAGATCCT
gi|21023 : TAAT----G--AAA-A-TGTTA---TGGA-A----------GACA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21024 : TGA-A-TAACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATCCT
gi|21025 : -TCACT----AC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
blockSeqs : TTT GT A A TAG A CGATGGAATC G C ATCG GCAT T A G G AA T
blockSeqs : . . . . . A . G A A TG . . . . A .
blockSeqs : . . . . . . . . . . TG . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
finalCons : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Alignments
lowQualScore : 1111111111 1111
lowQualScore : 444 33 2 2 444 4 0000000000 4 4 6666 0000 2 2 2 2 55 2
lowQualScore : ... .. . . ... . .......... . . .... .... . . . . .. .
lowQualScore : 111 22 4 4 111 7 3333333333 4 2 6666 3333 1 1 1 1 00 1
consensus : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
Reference ( family-881 ) : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21007 : AATAAT---CA--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACAGAGATCCT
gi|21008 : AATAAT---CG--AAA-T-TGTTG---CGGG-A----------GTGA-A-TCACT----CC----CG-CAT-CGT-GC--ACCA-TTATGGAGATCCT
gi|21009 : AATAAT---CA--AAA-T-TGTTG---CAGG-A----------GTGA-A-TCACT----CC----CG-CAT-C-C-GC--ACAA-TTACGGAGATCCT
gi|21010 : AATAAT---CG--AAA-T-TGTTG---TGGG-A----------GTGA-A-TCACT----CC----CG-AAT-C-T-GC--ACCC-TTACCGAGATCTT
gi|21011 : AATAAC---CG--ACA-A-TGTTG---CGGG-A----------GTGA-A-GCACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATC
gi|21012 : AATGAT---CG--AAA-T-TGTTG---CGGG-A----------GTAA-A-TCACT----CC----CA-AAT-C-T-TT--ACCA-TTACGGATATCCT
gi|21013 : AATGAT---TG--AAA-A-TGTTT---CGGA-A----------GTTA-A-TCACT----CC----CG-CAT-C-T-GC--AACA-TTACAAAAATCCT
gi|21014 : AATGAT---CA--AAA-A-TGTCA---CGGG-A----------GTGA-A-TAACT----CC----TA-CAT-T-T-GC--ACCA-TTACGAAGATCCT
gi|21015 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-T-GCA-ACCA-TTACAGAGATCCT
gi|21016 : AATAAT---CG--AAA-T-TGTTG---TGGGAA----------ATGAGA-TCACT----GCTG--CG-CGT-C-TGGCAAACCATTTACCGAGA
gi|21017 : AATAATTTTCA--AAA-TATGTTGTAGCAGG-A----------GTGA-A-TCACT----CC----TG-CAT-T-T-GC--ACAA-TTACGGAGATCCT
gi|21018 : AATAAT---TA--AAA-T-TGTTG---CGGA-A----------GTGA-ACTTGGTA---CC----CATCAT-C-T-GC--ACCA-TTACGGAGAACC
gi|21019 : AATAAA---CG--AAA-T-TGTTG---AGGG-A----------GTGA-A-TTACT----CC----CG-CAT-T-T-GC--ACCC-TTA
gi|21020 : AATAAT---CA--AAC-T-TGTTA---CGGG-G----------GTGA-A-CCGCTATCGCC----TG-CAT-C-T-GC--GGCA-TTACGGAGATACT
gi|21021 : AATAAT---CG--AAAAT-TGTTG---CTGG-ACGATGGAATCGTGA-AATCACT----CCGCATCG-CATAC-T-GC---CCA-TTACGGAGATC
gi|21022 : ATAAT---CGGTAAA-T-TGT-A---CGGG-A----------GTGC-A-TCACT----CC----CG-ATT-T-T-GC--GACA--TACGGAGATCCT
gi|21023 : TAAT----G--AAA-A-TGTTA---TGGA-A----------GACA-A-TCACT----CC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT
gi|21024 : TGA-A-TAACT----CC----CG-CAT-T-T-GC--ACCA-TTACGGAGATCCT
gi|21025 : -TCACT----AC----CG-CAT-C-T-GC--ACCA-TTACGGAGATCCT