lowQualScore : 11 22222222222 1111111111 11111 11111 11
lowQualScore : 2 2 2 2 2 44 33 2 4 2 11111111111 33 2 7777777777 555 2 8888888 4 4 2 2 11111 2 22 22 44444 5 55 2 3 1
lowQualScore : . . . . . .. .. . . . ........... .. . .......... ... . ....... . . . . ..... . .. .. ..... . .. . . .
lowQualScore : 2 2 2 2 2 66 11 2 4 2 11111111111 11 2 6666666666 555 0 9999999 0 0 0 0 44444 5 99 99 33333 0 77 9 1 4
consensus : TATATT-TGCAT-A-T-CCACT-GTTCCTC--TA-TGCT-ATGACTGC-A-----------TA--T-C--N-------AT---CA-A--T----TG-C-GT-TCAT-A-CC-NCTATGAACC--ACACTT--GAA--TTTCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Reference ( gi|24043 ) : TATATT-TGCAT-A-T-CCACT-GCATCTC--TA-TGCT-ATGACTGC-A-----------TA--T-C--A-------AT---CA-A--T----TG-C-GT-TCAT-A-CC-GCTATGAATC--ACACTT--GAA--TATCTA-TGAA-GGCAA-TTACTTCGAGCATTTCTATG
gi|24044 : TATAAT-TGCAT-A-TTCCACT-GCATCTC--TA-TGCT-ATGACTGC-A-----------TA--T-C--A-------ATAAACA-A--T----TG-C-GT-TCAT-A-CCGGCTATGAATC--ACACTTTGGAA--TATCTA-TGAA-GGC-A-TTAC-TCGAGCATTTCTAT
gi|24040 : TATATT-CGCAT-A-T-CCACT-GTATCTC--TA-TGCT-ATGACTGT-A-----------TG--T-C--T-------AT---CA-A--T----TG-C-GT-TCAT-A-CC-GTTATGAACG--ACATTT--GAT--TATCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24041 : TATATT-CGCAT-A-T-CCACT-GTATCTC--TA-TGCT-ATGACTGT-A-----------TG--T-C--T-------AT---CA-A--T----TG-C-GT-TCAT-A-CC-GTTATGAACG--ACATTT--GAT--TATCTA-TGAA-TGTAATTTACTTCGAGCATTTCTATG
gi|24045 : TATATT-TGCAT-A-T-TCACT-GCATCTC--TA-TGCT-ATGACTGC-A-----------TA--T-T--T-------AT---CT-A--T----TG-C-GT-TCAT-A-CA-TCTATGAGTC--ACACAC---AT--TATCTA-TGAG-TGCAA-TTACTTCTAGCATTTCTATG
gi|24042 : TATATT-CGCAT-A-T-CCACT-GTATCTC--TA-TGCT-ATGACTGT-A-----------TG--T-C--T-------AT---CA-AT-T----TG-C-GT-T-AT-A-CC-GTTAT-AACG--ACATTT--GAT--TATCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24047 : TATATT-TGCAT-A-T-CCACT-GTTCCTC--TA-TGCT-ATGACTGC-A-----------TA--T-C--T-------AT---CA-A--T----TG-C-GT-TCAT-A-CC-TCTATGAACC--ACACTT--GAA--ATTCTA-TGAA-TGCAA-TT
gi|24050 : TATATT-TACAT-A-T-CCGCT-ATCCCTC--TA-TGCT-ATGGCTAC-A-----------TA--T-C--T-------AT---CA-A--T----TG-C-AT-TAAT-A-AC-TCGATGAATC--ACACTT--GAA--ATTCTA-TGAA-TGCAA-TT
gi|24048 : TATATT-TGCAT-A-A-CCACT-GTTCCTC--TA-TGCT-ATGACTAT-T-----------TA--T-C--T-------AT---CA-A--T----TG-C-GT-TTAT-A-GC-GCTATGAATC--ACAATT--GGT--TTTCTATTGCT-TGCAA-GGATTTTGAACATCTGCATG
gi|24046 : TATATTCTGCAT-A-T-TCACTTGCATCTC--TA-TGCT-ATGACTGC-A-----------TA--T-T-----------T---TATA--T----TG-CTTT-TCAT-A-CA-TCTATGAGTCAAACACTT---------TCTA-TGAG-TG-AA-TTAGTTCTAGCATCTC
gi|24049 : TAAATT-TGCAT-A-T-CCACT-GTTCCTC--TAATGCT-ATGACTGA-A-----------TA--T-C--T-------TT---CA-A--A----TG-C-GT-TCAT-A----ACTATGAACC--ACACTT--GAA--ATTCTA-TGAA-
gi|24051 : TATATT-TGCAT-AAT-CCGCT-GTTCCTC--TA-TGCT-ATGACAGT-A-----------TA--TCC--A-------CT---CA-A-------TG-C-GT-TCATCA-CC-TCTATGAATC--ACAC-T--GAAATTTTCTATTGAT-TGCAT-TGATTTGAAACACTTGTATGtg
gi|24053 : TATATT--GCATTA-T-C-ACT-G--TCTC--TA--GCTCATGACTGCCA-----------TA--T-C--A-------AA---TA-AAAT----TG-C-GT-TCAT-A-CC--TTATGAATC--AC-CTT--GAAT-TTTCTA-TGAATTGCAC-TT--TATGAACACTTGTAT
gi|24052 : TATATT-TGCAT-A-T-C-ACT-GTTCCTC--TA--GCTTATGACTGC-A-----------TA--T-CTTG-------ATG--CA-A--T----TG-CGGTGTCAT-ATCC-TCTATGAA
gi|24054 : ATATT-TGCAT-A-T-CCACT-GT-TTTCCTTA-TGCT-ATGACTGC-------------TACTT-C----------AC---CA-A--T----TG-C-GT-TCAT-A-TC-TCTATGAACC--ACACTC--GAA--ATTCTA-CGGA-caactattt
gi|24055 : ATATT-TGCAT-A-T-CCACT-GTTTCCT--TC-TGCT-ATGACTGC-A-----------TA--C-T--T-------AT---CA-A--T----TG-C-CA-TCAT-A-TC-TCGATGAACC--ACACTC--GAt
gi|24056 : TATT-TGCAT-A-T-TCACT-GTTCCTC--TC-TGCT-ATGATTGC-ACTTCAGATGAGTG--T-C--A-------GT---TA-G--A----TG-T-GT-TCAC-A-C---CT-TGAATC--ACACTT--CTA--TTTCTA-ATAA-TGAAA-TTGGTTTAAGCA
gi|24057 : ATT-TGCAT-A-T-TCACT-GTTCCTC--TC-TGCT-ATGACTGC-ATTTCAGATGAGTG--T-C--A-------GT---TA-A--A----TA-T-GT-TCAC-A-C---CT-TGAACC--ACGCTT--CTA--TTTCTA-AGAA-TGCAA-TTGGTTCGAGCATTTGCATG
gi|24058 : ATT-TGCAT-A-T-TCACT-GTTCCTC--TC-TGCT-ATAACGGC-A-----------TT--T-C--AGATGAGTGT---CA-G--TTAGATA-T-GT-TTAC-A-C---CT-TGAATC--ACACTT--CTA--TTTCTA-AGAA-TGCAG-TTGGTTTGAGCATTTGCATG
gi|24040 : --A-------AT---CA-A--A----TGTC-GT-TCAT-A-AC-GGTATGAA-C--GCAATT--GA
gi|24041 : tatattcgcatatccactgtatctctatgctatgactgtatgtcta--A-------AT---CA-A--A----TGTC-GT-TCAT-A-AC-GGTATGAA-C--GCAATT--GAatctatgaatgtaattacttcgagcatttctatg
Alignments
lowQualScore : 22222222222 11111111
lowQualScore : 2 2 2 2 2 666 2 2 2 2 00000000000 4 00000000 2 555 7777777 4 2 2 2 666 33 33 2 2 4 2 2 2 0
lowQualScore : . . . . . ... . . . . ........... . ........ . ... ....... . . . . ... .. .. . . . . . . .
lowQualScore : 1 1 1 1 1 888 1 1 1 1 00000000000 2 77777777 1 888 2222222 2 1 1 1 222 11 22 4 4 7 4 7 1 4
consensus : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGC-T-ATGACTGC-A-----------TA-TC-------TA-T---CAA--T----TGC-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-T-CTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Reference ( family-880 ) : TATATT-TGCAT-A-T-CCACT-GTT--CCTCTA-TGC-T-ATGACTGC-A-----------TA-TC-------NA-T---CAA--T----TGC-GT-TCAT-A-CC-NCTATGAACCACACTT--GAA--TT-T-CTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
gi|24040 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGC-T-ATGACTGT-A-----------TG-TC-------TA-T---CAA--T----TGC-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-T-CTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24041 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGC-T-ATGACTGT-A-----------TG-TC-------TA-T---CAA--T----TGC-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-T-CTA-TGAA-TGTAATTTACTTCGAGCATTTCTATG
gi|24042 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGC-T-ATGACTGT-A-----------TG-TC-------TA-T---CAAT-T----TGC-GT-T-AT-A-CC-GTTAT-AACGACATTT--GAT--TA-T-CTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24043 : TATATT-TGCAT-A-T-CCACT-GCA--TCTCTA-TGC-T-ATGACTGC-A-----------TA-TC-------AA-T---CAA--T----TGC-GT-TCAT-A-CC-GCTATGAATCACACTT--GAA--TA-T-CTA-TGAA-GGCAA-TTACTTCGAGCATTTCTATG
gi|24044 : TATAAT-TGCAT-A-TTCCACT-GCA--TCTCTA-TGC-T-ATGACTGC-A-----------TA-TC-------AA-TAAACAA--T----TGC-GT-TCAT-A-CCGGCTATGAATCACACTTTGGAA--TA-T-CTA-TGAA-GGC-A-TTAC-TCGAGCATTTCTAT
gi|24045 : TATATT-TGCAT-A-T-TCACT-GCA--TCTCTA-TGC-T-ATGACTGC-A-----------TA-TT-------TA-T---CTA--T----TGC-GT-TCAT-A-CA-TCTATGAGTCACAC----ACA--TTAT-CTA-TGAG-TGCAA-TTACTTCTAGCATTTCTATG
gi|24046 : TATATTCTGCAT-A-T-TCACTTGCA--TCTCTA-TGC-T-ATGACTGC-A-----------TATTT-------TA-T-----A--T----TGCTTT-TCAT-A-CA-TCTATGAGTCAAAC-----AC--TT-T-CTA-TGAG-TG-AA-TTAGTTCTAGCATCTCT
gi|24047 : TATATT-TGCAT-A-T-CCACT-GTT--CCTCTA-TGC-T-ATGACTGC-A-----------TA-TC-------TA-T---CAA--T----TGC-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--AT-T-CTA-TGAA-TGCAA-TT
gi|24048 : TATATT-TGCAT-A-A-CCACT-GTT--CCTCTA-TGC-T-ATGACTAT-T-----------TA-TC-------TA-T---CAA--T----TGC-GT-TTAT-A-GC-GCTATGAATCACAATT--GGT--TT-T-CTATTGCT-TGCAA-GGATTTTGAACATCTGCATG
gi|24049 : TAAATT-TGCAT-A-T-CCACT-GTT--CCTCTAATGC-T-ATGACTGA-A-----------TA-TC-------TT-T---CAA--A----TGC-GT-TCAT-A----ACTATGAACCACACTT--GAA--AT-T-CTA-TGAA-TG
gi|24050 : TATATT-TACAT-A-T-CCGCT-ATC--CCTCTA-TGC-T-ATGGCTAC-A-----------TA-TC-------TA-T---CAA--T----TGC-AT-TAAT-A-AC-TCGATGAATCACACTT--GAA--AT-T-CTA-TGAA-TGCAA-TT
gi|24051 : TATATT-TGCAT-AAT-CCGCT-GTT--CCTCTA-TGC-T-ATGACAGT-A-----------TA-TC-------CACT---CAA-------TGC-GT-TCATCA-CC-TCTATGAATCACAC-T--GAAATTT-T-CTATTGAT-TGCAT-TGATTTGAAACACTTGTATG
gi|24052 : TATATT-TGCAT-A-T-C-ACT-GTT--CCTCTA--GCTT-ATGACTGC-A-----------TA-TCTT-----GA-TG--CAA--T----TGCGGTGTCAT-ATCC-TCTATGAACAAC
gi|24053 : TATATT--GCATTA-T-C-ACT-GT----CTCTA--GC-TCATGACTGCCA-----------TA-TC-------AA-A---TAAAAT----TGC-GT-TCAT-A-CC-T-TATGAATCAC-CTT--GAA--TT-TTCTA-TGAATTGCAC-TT--TATGAACACTTGTATtattt
gi|24054 : ATATT-TGCAT-A-T-CCACT-GTTTTCCT-TA-TGC-T-ATGACTGC-------------TACTT-------CA-C---CAA--T----TGC-GT-TCAT-A-TC-TCTATGAACCACACTC--GAA--AT-T-CTA-CGGA-T
gi|24055 : ATATT-TGCAT-A-T-CCACT-GTT--TCCTTC-TGC-T-ATGACTGC-A-----------TA-CT-------TA-T---CAA--T----TGC-CA-TCAT-A-TC-TCGATGAACCACACTC--GA
gi|24056 : TATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGC-T-ATGATTGC-ACTTCAGATGAGTG-TC-------AG-T---TAG--A----TGT-GT-TCAC-A-CC-T---TGAATCACACTT--CTA--TT-T-CTA-ATAA-TGAAA-TTGGTTTAAGCA
gi|24057 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGC-T-ATGACTGC-ATTTCAGATGAGTG-TC-------AG-T---TAA--A----TAT-GT-TCAC-A-CC-T---TGAACCACGCTT--CTA--TT-T-CTA-AGAA-TGCAA-TTGGTTCGAGCATTTGCATG
gi|24058 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGC-T-ATAACGGC-A-----------TT-TCAGATGAGTG-T---CAG--TTAGATAT-GT-TTAC-A-CC-T---TGAATCACACTT--CTA--TT-T-CTA-AGAA-TGCAG-TTGGTTTGAGCATTTGCATG
Alignments
lowQualScore : 2222222
lowQualScore : 2 2 2 2 2 555 2 4 2 4 4444444 22 2 555 2 4444 8888 4 2 2 2 555 33 55 2 4 2 2 2 0
lowQualScore : . . . . . ... . . . . ....... .. . ... . .... .... . . . . ... .. .. . . . . . .
lowQualScore : 1 1 1 1 1 999 1 2 1 2 2222222 99 1 888 1 5555 9999 2 1 1 1 000 11 66 4 7 4 7 1 4
consensus : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Reference ( family-880 ) : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
gi|24040 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24041 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAATTTACTTCGAGCATTTCTATG
gi|24042 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAATT----TG----C-GT-T-AT-A-CC-GTTAT-AACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24043 : TATATT-TGCAT-A-T-CCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GCTATGAATCACACTT--GAA--TA-TCTA-TGAA-GGCAA-TTACTTCGAGCATTTCTATG
gi|24044 : TATAAT-TGCAT-A-TTCCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-TAAACAA-T----TG----C-GT-TCAT-A-CCGGCTATGAATCACACTTTGGAA--TA-TCTA-TGAA-GGC-A-TTAC-TCGAGCATTTCTAT
gi|24045 : TATATT-TGCAT-A-T-TCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TT-------T--A-T---CTA-T----TG----C-GT-TCAT-A-CA-TCTATGAGTCACAC----ACA--TTATCTA-TGAG-TGCAA-TTACTTCTAGCATTTCTATG
gi|24046 : TATATTCTGCAT-A-T-TCACTTGCA--TCTCTA-TGCT-ATGACTGC-ATATTT-------T--A-T-----A-T----TG----CTTT-TCAT-A-CA-TCTATGAGTCAAAC-----AC--TT-TCTA-TGAG-TG-AA-TTAGTTCTAGCATCTCT
gi|24047 : TATATT-TGCAT-A-T-CCACT-GTT--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24048 : TATATT-TGCAT-A-A-CCACT-GTT--CCTCTA-TGCT-ATGACTAT-TTA-TC-------T--A-T---CAA-T----TG----C-GT-TTAT-A-GC-GCTATGAATCACAATT--GGT--TT-TCTATTGCT-TGCAA-GGATTTTGAACATCTGCATG
gi|24049 : TAAATT-TGCAT-A-T-CCACT-GTT--CCTCTAATGCT-ATGACTGA-ATA-TC-------T--T-T---CAA-A----TG----C-GT-TCAT-A-A---CTATGAACCACACTT--GAA--AT-TCTA-TGAA-TG
gi|24050 : TATATT-TACAT-A-T-CCGCT-ATC--CCTCTA-TGCT-ATGGCTAC-ATA-TC-------T--A-T---CAA-T----TG----C-AT-TAAT-A-AC-TCGATGAATCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24051 : TATATT-TGCAT-AAT-CCGCT-GTT--CCTCTA-TGCT-ATGACAGT-ATA-TC-------C--ACT---CAA------TG----C-GT-TCATCA-CC-TCTATGAATCACAC-T--GAAATTT-TCTATTGAT-TGCAT-TGATTTGAAACACTTGTATG
gi|24052 : TATATT-TGCAT-A-T-C-ACT-GTT--CCTCTA--GCTTATGACTGC-ATA-TC-------TTGA-TG--CAA-T----TG----CGGTGTCAT-ATCC-TCTATGAACAAC
gi|24053 : TATATT--GCATTA-T-C-ACT-GT----CTCTA--GCTCATGACTGCCATA-TCAAA----T--A-----AAA-T----TG----C-GT-TCAT-A-CC-T-TATGAATCAC-CTT--GAAT-TT-TCTA-TGAATTGCAC-TT--TATGAACACTTGTATtattt
gi|24054 : ATATT-TGCAT-A-T-CCACT-GTTTTCCT-TA-TGCT-ATGACTGC--TACTT-------C--A-C---CAA-T----TG----C-GT-TCAT-A-TC-TCTATGAACCACACTC--GAA--AT-TCTA-CGGA-T
gi|24055 : ATATT-TGCAT-A-T-CCACT-GTT--TCCTTC-TGCT-ATGACTGC-ATA-CT-------T--A-T---CAA-T----TG----C-CA-TCAT-A-TC-TCGATGAACCACACTC--GA
gi|24056 : TATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGATTGC-ACT-TCAGATGAGT--G-T---CAG-TTAGATG----T-GT-TCAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-ATAA-TGAAA-TTGGTTTAAGCA
gi|24057 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGACTGC-ATT-TCAGATGAGT--G-T---CAG-T----TAAATAT-GT-TCAC-A-CC-T---TGAACCACGCTT--CTA--TT-TCTA-AGAA-TGCAA-TTGGTTCGAGCATTTGCATG
gi|24058 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATAACGGC-ATT-TCAGATGAGT--G-T---CAG-T----TAGATAT-GT-TTAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-AGAA-TGCAG-TTGGTTTGAGCATTTGCATG
Alignments
lowQualScore : 2222222
lowQualScore : 2 2 2 2 2 555 2 4 2 4 4444444 22 2 555 2 4444 8888 4 2 2 2 555 33 55 2 4 2 2 2 0
lowQualScore : . . . . . ... . . . . ....... .. . ... . .... .... . . . . ... .. .. . . . . . .
lowQualScore : 1 1 1 1 1 999 1 2 1 2 2222222 99 1 888 1 5555 9999 2 1 1 1 000 11 66 4 7 4 7 1 4
consensus : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Reference ( family-880 ) : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
gi|24040 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24041 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAATTTACTTCGAGCATTTCTATG
gi|24042 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAATT----TG----C-GT-T-AT-A-CC-GTTAT-AACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24043 : TATATT-TGCAT-A-T-CCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GCTATGAATCACACTT--GAA--TA-TCTA-TGAA-GGCAA-TTACTTCGAGCATTTCTATG
gi|24044 : TATAAT-TGCAT-A-TTCCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-TAAACAA-T----TG----C-GT-TCAT-A-CCGGCTATGAATCACACTTTGGAA--TA-TCTA-TGAA-GGC-A-TTAC-TCGAGCATTTCTAT
gi|24045 : TATATT-TGCAT-A-T-TCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TT-------T--A-T---CTA-T----TG----C-GT-TCAT-A-CA-TCTATGAGTCACAC----ACA--TTATCTA-TGAG-TGCAA-TTACTTCTAGCATTTCTATG
gi|24046 : TATATTCTGCAT-A-T-TCACTTGCA--TCTCTA-TGCT-ATGACTGC-ATATTT-------T--A-T-----A-T----TG----CTTT-TCAT-A-CA-TCTATGAGTCAAAC-----AC--TT-TCTA-TGAG-TG-AA-TTAGTTCTAGCATCTCT
gi|24047 : TATATT-TGCAT-A-T-CCACT-GTT--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24048 : TATATT-TGCAT-A-A-CCACT-GTT--CCTCTA-TGCT-ATGACTAT-TTA-TC-------T--A-T---CAA-T----TG----C-GT-TTAT-A-GC-GCTATGAATCACAATT--GGT--TT-TCTATTGCT-TGCAA-GGATTTTGAACATCTGCATG
gi|24049 : TAAATT-TGCAT-A-T-CCACT-GTT--CCTCTAATGCT-ATGACTGA-ATA-TC-------T--T-T---CAA-A----TG----C-GT-TCAT-A-A---CTATGAACCACACTT--GAA--AT-TCTA-TGAA-TG
gi|24050 : TATATT-TACAT-A-T-CCGCT-ATC--CCTCTA-TGCT-ATGGCTAC-ATA-TC-------T--A-T---CAA-T----TG----C-AT-TAAT-A-AC-TCGATGAATCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24051 : TATATT-TGCAT-AAT-CCGCT-GTT--CCTCTA-TGCT-ATGACAGT-ATA-TC-------C--ACT---CAA------TG----C-GT-TCATCA-CC-TCTATGAATCACAC-T--GAAATTT-TCTATTGAT-TGCAT-TGATTTGAAACACTTGTATG
gi|24052 : TATATT-TGCAT-A-T-C-ACT-GTT--CCTCTA--GCTTATGACTGC-ATA-TC-------TTGA-TG--CAA-T----TG----CGGTGTCAT-ATCC-TCTATGAACAAC
gi|24053 : TATATT--GCATTA-T-C-ACT-GT----CTCTA--GCTCATGACTGCCATA-TCAAA----T--A-----AAA-T----TG----C-GT-TCAT-A-CC-T-TATGAATCAC-CTT--GAAT-TT-TCTA-TGAATTGCAC-TT--TATGAACACTTGTATtattt
gi|24054 : ATATT-TGCAT-A-T-CCACT-GTTTTCCT-TA-TGCT-ATGACTGC--TACTT-------C--A-C---CAA-T----TG----C-GT-TCAT-A-TC-TCTATGAACCACACTC--GAA--AT-TCTA-CGGA-T
gi|24055 : ATATT-TGCAT-A-T-CCACT-GTT--TCCTTC-TGCT-ATGACTGC-ATA-CT-------T--A-T---CAA-T----TG----C-CA-TCAT-A-TC-TCGATGAACCACACTC--GA
gi|24056 : TATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGATTGC-ACT-TCAGATGAGT--G-T---CAG-TTAGATG----T-GT-TCAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-ATAA-TGAAA-TTGGTTTAAGCA
gi|24057 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGACTGC-ATT-TCAGATGAGT--G-T---CAG-T----TAAATAT-GT-TCAC-A-CC-T---TGAACCACGCTT--CTA--TT-TCTA-AGAA-TGCAA-TTGGTTCGAGCATTTGCATG
gi|24058 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATAACGGC-ATT-TCAGATGAGT--G-T---CAG-T----TAGATAT-GT-TTAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-AGAA-TGCAG-TTGGTTTGAGCATTTGCATG
blockSeqs : C T A T T TTT A T C T AGATGAG TG C AAA T TAGA AATA T G C T GGC TG AT A T T T C
blockSeqs : . . . . . A . C . C AGATGAG . . G . . GATA G . . . GT . T . T . . C
blockSeqs : . . . . . A . . . . AGATGAG . . . . . . . . . . GT . . . . . . C
blockSeqs : . . . . . A . . . . AAA . . . . . . . . . . GC . . . . . . C
blockSeqs : . . . . . A . . . . . . . . . . . . . . . TC . . . . . . C
blockSeqs : . . . . . A . . . . . . . . . . . . . . . TC . . . . . . G
blockSeqs : . . . . . A . . . . . . . . . . . . . . . TC . . . . . . T
blockSeqs : . . . . . T . . . . . . . . . . . . . . . GC . . . . . . T
blockSeqs : . . . . . T . . . . . . . . . . . . . . . TC . . . . . . G
blockSeqs : . . . . . T . . . . . . . . . . . . . . . TC . . . . . . G
blockSeqs : . . . . . C . . . . . . . . . . . . . . . TC . . . . . . G
blockSeqs : . . . . . T . . . . . . . . . . . . . . . TC . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . TC . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T
blockSeqCons :
originalCons : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
finalCons : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Alignments
lowQualScore : 2222222
lowQualScore : 2 2 2 2 2 555 2 4 2 4 4444444 22 2 555 2 4444 8888 4 2 2 2 555 33 55 2 4 2 2 2 0
lowQualScore : . . . . . ... . . . . ....... .. . ... . .... .... . . . . ... .. .. . . . . . .
lowQualScore : 1 1 1 1 1 999 1 2 1 2 2222222 99 1 888 1 5555 9999 2 1 1 1 000 11 66 4 7 4 7 1 4
consensus : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
Reference ( family-880 ) : TATATT-TGCAT-A-T-CCACT-GTN--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--TT-TCTA-TGAA-TGCAA-TTACTTCGAGCATTTCTATG
gi|24040 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24041 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GTTATGAACGACATTT--GAT--TA-TCTA-TGAA-TGTAATTTACTTCGAGCATTTCTATG
gi|24042 : TATATT-CGCAT-A-T-CCACT-GTA--TCTCTA-TGCT-ATGACTGT-ATG-TC-------T--A-T---CAATT----TG----C-GT-T-AT-A-CC-GTTAT-AACGACATTT--GAT--TA-TCTA-TGAA-TGTAA-TTACTTCGAGCATTTCTATG
gi|24043 : TATATT-TGCAT-A-T-CCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-T---CAA-T----TG----C-GT-TCAT-A-CC-GCTATGAATCACACTT--GAA--TA-TCTA-TGAA-GGCAA-TTACTTCGAGCATTTCTATG
gi|24044 : TATAAT-TGCAT-A-TTCCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TC-------A--A-TAAACAA-T----TG----C-GT-TCAT-A-CCGGCTATGAATCACACTTTGGAA--TA-TCTA-TGAA-GGC-A-TTAC-TCGAGCATTTCTAT
gi|24045 : TATATT-TGCAT-A-T-TCACT-GCA--TCTCTA-TGCT-ATGACTGC-ATA-TT-------T--A-T---CTA-T----TG----C-GT-TCAT-A-CA-TCTATGAGTCACAC----ACA--TTATCTA-TGAG-TGCAA-TTACTTCTAGCATTTCTATG
gi|24046 : TATATTCTGCAT-A-T-TCACTTGCA--TCTCTA-TGCT-ATGACTGC-ATATTT-------T--A-T-----A-T----TG----CTTT-TCAT-A-CA-TCTATGAGTCAAAC-----AC--TT-TCTA-TGAG-TG-AA-TTAGTTCTAGCATCTCT
gi|24047 : TATATT-TGCAT-A-T-CCACT-GTT--CCTCTA-TGCT-ATGACTGC-ATA-TC-------T--A-T---CAA-T----TG----C-GT-TCAT-A-CC-TCTATGAACCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24048 : TATATT-TGCAT-A-A-CCACT-GTT--CCTCTA-TGCT-ATGACTAT-TTA-TC-------T--A-T---CAA-T----TG----C-GT-TTAT-A-GC-GCTATGAATCACAATT--GGT--TT-TCTATTGCT-TGCAA-GGATTTTGAACATCTGCATG
gi|24049 : TAAATT-TGCAT-A-T-CCACT-GTT--CCTCTAATGCT-ATGACTGA-ATA-TC-------T--T-T---CAA-A----TG----C-GT-TCAT-A-A---CTATGAACCACACTT--GAA--AT-TCTA-TGAA-TG
gi|24050 : TATATT-TACAT-A-T-CCGCT-ATC--CCTCTA-TGCT-ATGGCTAC-ATA-TC-------T--A-T---CAA-T----TG----C-AT-TAAT-A-AC-TCGATGAATCACACTT--GAA--AT-TCTA-TGAA-TGCAA-TT
gi|24051 : TATATT-TGCAT-AAT-CCGCT-GTT--CCTCTA-TGCT-ATGACAGT-ATA-TC-------C--ACT---CAA------TG----C-GT-TCATCA-CC-TCTATGAATCACAC-T--GAAATTT-TCTATTGAT-TGCAT-TGATTTGAAACACTTGTATG
gi|24052 : TATATT-TGCAT-A-T-C-ACT-GTT--CCTCTA--GCTTATGACTGC-ATA-TC-------TTGA-TG--CAA-T----TG----CGGTGTCAT-ATCC-TCTATGAACAAC
gi|24053 : TATATT--GCATTA-T-C-ACT-GT----CTCTA--GCTCATGACTGCCATA-TCAAA----T--A-----AAA-T----TG----C-GT-TCAT-A-CC-T-TATGAATCAC-CTT--GAAT-TT-TCTA-TGAATTGCAC-TT--TATGAACACTTGTATtattt
gi|24054 : ATATT-TGCAT-A-T-CCACT-GTTTTCCT-TA-TGCT-ATGACTGC--TACTT-------C--A-C---CAA-T----TG----C-GT-TCAT-A-TC-TCTATGAACCACACTC--GAA--AT-TCTA-CGGA-T
gi|24055 : ATATT-TGCAT-A-T-CCACT-GTT--TCCTTC-TGCT-ATGACTGC-ATA-CT-------T--A-T---CAA-T----TG----C-CA-TCAT-A-TC-TCGATGAACCACACTC--GA
gi|24056 : TATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGATTGC-ACT-TCAGATGAGT--G-T---CAG-TTAGATG----T-GT-TCAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-ATAA-TGAAA-TTGGTTTAAGCA
gi|24057 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATGACTGC-ATT-TCAGATGAGT--G-T---CAG-T----TAAATAT-GT-TCAC-A-CC-T---TGAACCACGCTT--CTA--TT-TCTA-AGAA-TGCAA-TTGGTTCGAGCATTTGCATG
gi|24058 : ATT-TGCAT-A-T-TCACT-GTT--CCTCTC-TGCT-ATAACGGC-ATT-TCAGATGAGT--G-T---CAG-T----TAGATAT-GT-TTAC-A-CC-T---TGAATCACACTT--CTA--TT-TCTA-AGAA-TGCAG-TTGGTTTGAGCATTTGCATG