lowQualScore                  :                             1                          
lowQualScore                  :                   2         5        4     55      2   
lowQualScore                  :                   .         .        .     ..      .   
lowQualScore                  :                   2         0        6     22      2   
consensus                     : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAAT-AACTTTA-AAA
Reference ( gi|58134 )        : ATCATTATGTATAGAATT-ATAGCTAAAGAAACCCCTAAAAAT-GACTTTA-AAA
gi|58138                      : ATCATTATGTATAGAATT-ATAACTAAATAAACCCCTAAAAAT-GACTTGA-AAA
gi|58132                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAAT-AACTTTA-AAA
gi|58133                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAAT-TACTTTA-AAA
gi|58135                      : ATTATTATGTATAGAAGT-ATAGCTAAATAAACCCCTAAAAAT-AACTTTA-AAA
gi|58136                      : ATTATAATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAAT-AACTTTA-AAA
gi|58137                      : ATCATTATGTACAGAATT-GTAGCTAAATAACCCCCTAAAAAT-AACTTTA-AAA
gi|58139                      : ATCATTATGTATAGAAAT-ATAGCTCAATAAACCCCCAAAAAT-AACTTTA-AAA
gi|58140                      : ATCAT-ATGAATAGAATT-ATAGCTAAATAAACCCCTAAAAGT-AACTTTA-
gi|58141                      : ATTATGATGTATAGAATT-TTAGCTAAATCAACCCCTAAAAAT-AACTTTA-AAA
gi|58144                      : ATCATTACGGGTAGAAGT-ATAGCTAAATAAATCCCTAAAAAT-AACTTTA-AA
gi|58142                      : ATCATTATATATAGATAT-ATAGCTAAATAAACCACTAAAAGT-AACTTTA-AAA
gi|58143                      : ATTATTATGTATAGATAT-ATAGCTAAATTAACCCCTAAAAGT-AACTTTA-AAA
gi|58146                      : ATCATTATGTAAGGAATC-ATAGCT-AATAAACCCCTAAAAAT-AACTTTATAAA
gi|58147                      : ATCATTACGTATAGAATT-ATAGCTTAATAAACCCCT--AAATCGACGTTG-AAA
gi|58145                      : ATCATTATGTATAGAATTAATAACTAAATAACCCCCT-AAAAT-GAATTGA-AAA
gi|58148                      :  TCGTTATGTATAGAATT-ATAGCTAAACAAACCCCTAGAAAT-AACTTTA-AAA
gi|58149                      :   CATTA-GTATAGAATT-ATAGCTAAATAAACCCCTAAAACT-GACTTTA-AAA
gi|58150                      :        TGTATAGAGTT-ATAGCTAAATAAACCCCT-AAAAT-AACTTTA-AAA

lowQualScore                  :                   2                  1            2   
lowQualScore                  :                   .                  .            .   
lowQualScore                  :                   1                  3            2   
consensus                     : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
Reference ( family-870 )      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58132                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA
gi|58133                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATTACTTTA-AAA
gi|58134                      : ATCATTATGTATAGAATT-ATAGCTAAAGAAACCCCTAAAAATGACTTTA-AAA
gi|58135                      : ATTATTATGTATAGAAGT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58136                      : ATTATAATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58137                      : ATCATTATGTACAGAATT-GTAGCTAAATAACCCCCTAAAAATAACTTTA-AAA
gi|58138                      : ATCATTATGTATAGAATT-ATAACTAAATAAACCCCTAAAAATGACTTGA-AAA
gi|58139                      : ATCATTATGTATAGAAAT-ATAGCTCAATAAACCCCCAAAAATAACTTTA-AAA
gi|58140                      : ATCAT-ATGAATAGAATT-ATAGCTAAATAAACCCCTAAAAGTAACTTTA-
gi|58141                      : ATTATGATGTATAGAATT-TTAGCTAAATCAACCCCTAAAAATAACTTTA-AAA
gi|58142                      : ATCATTATATATAGATAT-ATAGCTAAATAAACCACTAAAAGTAACTTTA-AAA
gi|58143                      : ATTATTATGTATAGATAT-ATAGCTAAATTAACCCCTAAAAGTAACTTTA-AAA
gi|58144                      : ATCATTACGGGTAGAAGT-ATAGCTAAATAAATCCCTAAAAATAACTTTA-AA
gi|58145                      : ATCATTATGTATAGAATTAATAACTAAATAACCCCCT-AAAATGAATTGA-AAA
gi|58146                      : ATCATTATGTAAGGAATC-ATAGCTAA-TAAACCCCTAAAAATAACTTTATAAA
gi|58147                      : ATCATTACGTATAGAATT-ATAGCTTAATAAACCCCTAAA
gi|58148                      :  TCGTTATGTATAGAATT-ATAGCTAAACAAACCCCTAGAAATAACTTTA-AAAtcgacgttgaaa
gi|58149                      :   CATTA-GTATAGAATT-ATAGCTAAATAAACCCCTAAAACTGACTTTA-AAA
gi|58150                      :        TGTATAGAGTT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA

lowQualScore                  :                   2                  1            2   
lowQualScore                  :                   .                  .            .   
lowQualScore                  :                   1                  3            2   
consensus                     : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
Reference ( family-870 )      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58132                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA
gi|58133                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATTACTTTA-AAA
gi|58134                      : ATCATTATGTATAGAATT-ATAGCTAAAGAAACCCCTAAAAATGACTTTA-AAA
gi|58135                      : ATTATTATGTATAGAAGT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58136                      : ATTATAATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58137                      : ATCATTATGTACAGAATT-GTAGCTAAATAACCCCCTAAAAATAACTTTA-AAA
gi|58138                      : ATCATTATGTATAGAATT-ATAACTAAATAAACCCCTAAAAATGACTTGA-AAA
gi|58139                      : ATCATTATGTATAGAAAT-ATAGCTCAATAAACCCCCAAAAATAACTTTA-AAA
gi|58140                      : ATCAT-ATGAATAGAATT-ATAGCTAAATAAACCCCTAAAAGTAACTTTA-
gi|58141                      : ATTATGATGTATAGAATT-TTAGCTAAATCAACCCCTAAAAATAACTTTA-AAA
gi|58142                      : ATCATTATATATAGATAT-ATAGCTAAATAAACCACTAAAAGTAACTTTA-AAA
gi|58143                      : ATTATTATGTATAGATAT-ATAGCTAAATTAACCCCTAAAAGTAACTTTA-AAA
gi|58144                      : ATCATTACGGGTAGAAGT-ATAGCTAAATAAATCCCTAAAAATAACTTTA-AA
gi|58145                      : ATCATTATGTATAGAATTAATAACTAAATAACCCCCT-AAAATGAATTGA-AAA
gi|58146                      : ATCATTATGTAAGGAATC-ATAGCTAA-TAAACCCCTAAAAATAACTTTATAAA
gi|58147                      : ATCATTACGTATAGAATT-ATAGCTTAATAAACCCCTAAA
gi|58148                      :  TCGTTATGTATAGAATT-ATAGCTAAACAAACCCCTAGAAATAACTTTA-AAAtcgacgttgaaa
gi|58149                      :   CATTA-GTATAGAATT-ATAGCTAAATAAACCCCTAAAACTGACTTTA-AAA
gi|58150                      :        TGTATAGAGTT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA


blockSeqs                     :                   A                  A            T
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  A            .
blockSeqs                     :                   .                  .            .
blockSeqs                     :                   .                  .            .
blockSeqs                     :                   .                  .             


blockSeqCons                  : 
originalCons                  : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
finalCons                     : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA

lowQualScore                  :                   2                  1            2   
lowQualScore                  :                   .                  .            .   
lowQualScore                  :                   1                  3            2   
consensus                     : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
Reference ( family-870 )      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58132                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA
gi|58133                      : ATCATTATGTATAGAATT-ATAGCTAAATAAACCCCT-AAAATTACTTTA-AAA
gi|58134                      : ATCATTATGTATAGAATT-ATAGCTAAAGAAACCCCTAAAAATGACTTTA-AAA
gi|58135                      : ATTATTATGTATAGAAGT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58136                      : ATTATAATGTATAGAATT-ATAGCTAAATAAACCCCTAAAAATAACTTTA-AAA
gi|58137                      : ATCATTATGTACAGAATT-GTAGCTAAATAACCCCCTAAAAATAACTTTA-AAA
gi|58138                      : ATCATTATGTATAGAATT-ATAACTAAATAAACCCCTAAAAATGACTTGA-AAA
gi|58139                      : ATCATTATGTATAGAAAT-ATAGCTCAATAAACCCCCAAAAATAACTTTA-AAA
gi|58140                      : ATCAT-ATGAATAGAATT-ATAGCTAAATAAACCCCTAAAAGTAACTTTA-
gi|58141                      : ATTATGATGTATAGAATT-TTAGCTAAATCAACCCCTAAAAATAACTTTA-AAA
gi|58142                      : ATCATTATATATAGATAT-ATAGCTAAATAAACCACTAAAAGTAACTTTA-AAA
gi|58143                      : ATTATTATGTATAGATAT-ATAGCTAAATTAACCCCTAAAAGTAACTTTA-AAA
gi|58144                      : ATCATTACGGGTAGAAGT-ATAGCTAAATAAATCCCTAAAAATAACTTTA-AA
gi|58145                      : ATCATTATGTATAGAATTAATAACTAAATAACCCCCT-AAAATGAATTGA-AAA
gi|58146                      : ATCATTATGTAAGGAATC-ATAGCTAA-TAAACCCCTAAAAATAACTTTATAAA
gi|58147                      : ATCATTACGTATAGAATT-ATAGCTTAATAAACCCCTAAA
gi|58148                      :  TCGTTATGTATAGAATT-ATAGCTAAACAAACCCCTAGAAATAACTTTA-AAAtcgacgttgaaa
gi|58149                      :   CATTA-GTATAGAATT-ATAGCTAAATAAACCCCTAAAACTGACTTTA-AAA
gi|58150                      :        TGTATAGAGTT-ATAGCTAAATAAACCCCT-AAAATAACTTTA-AAA