lowQualScore                  :              2 33    33   2 888888888                   33        2    
lowQualScore                  :              . ..    ..   . .........                   ..        .    
lowQualScore                  :              2 11    88   2 999999999                   11        5    
consensus                     : AATCTAATTAAAA-T--TAGAT-CTT-C---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
Reference ( gi|112562 )       : AATCTAATTAAAA-T--TAGAC-CTT-C---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112564                     : AATCTAATTAAAA-T--TAGAC-CTT-C---------CATCCGCTCCCTGGTTTTG--ATACGTCG-CGTG
gi|112563                     : AATCTAATTAAAA-T--TAGAC-CTT-C---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CATG
gi|112565                     : AATCTAATTAAAA-T--TAGAC-CTT-C---------CATCTGCTTCCTGGTTTCG--ATACGTCG-CGTG
gi|112566                     : AATCTAATTAAAA-T--CAGAT-CTT-C---------CACCCGCTCCCCGGTTTTG--ATATGTCG-CG
gi|112568                     : AATCTAATTAAAA-T--TAGAT-CTT-C---------CATCCGCTCCTCGGTTTTG--ATATGTTG-
gi|112569                     : AATCTAATTAAAAAT--TAGAT-CTTTC---------CATC-GCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112571                     : AATCTAATTAAAA-T--TAGAT-CTT-C---------CATCTGCTCCCCGGTATTG--ATATGTTG-CGT
gi|112573                     : AATCTAATTAAAA-T--TGGTT-CTT-C---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112575                     : AGTCTAATTAAAA-T--TAGAT-CTA-C---------CATCCGCTTCCCAGTTTTG--ATGCGTTG-CATG
gi|112567                     : AATCTAATTAAAA-T--TATAT-CTT-C---------AATACGCTCCCCGGTTTTGATATACGTCG-CG
gi|112570                     : AATCTACTTAAAA-T--TAGAC-CTT-CAAATCCGCGTATCCGCTCCCCGGTTTTG--ATACGTCGTCGT
gi|112577                     : AATCTAATTAAAA-T--TAGAT-CTT-C---------CTTCCGCTCCCCAGTTTCG--ATACATTT-TGTG
gi|112572                     : AATCTAATTAAAA-T--TAGAT-CTT-T---------CATCCGCT-CCTGGTTTTG--ATACAT-G-CATG
gi|112574                     : AATCTAATTAAAA-T--TGGTTTCTT-C---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112576                     : AATCTAATTAAGA-T--TGGAT-CGT-C---------CATCCACTCCCTGGTTTTG--ATACAT
gi|112578                     : AATCTAAATAAAA-TATTTGAT-ATT-C---------CATCCGCTCCCCTGTTTCA--GTTCGTTG-CGCG
gi|112579                     :  ATCCAATTAAAA-T--TAGAT-CTT-T---------CATCCGCTCCCCAGTTCCG--ATATGTCG-CGTG
gi|112580                     :   TCTAGTTAAAA-T--TAGAC-CTT-T---------CATCCGCTCCCCGGTTTTG--ATACG





Alignments
lowQualScore                  :              2 22     2 2   888888888                   22        2    
lowQualScore                  :              . ..     . .   .........                   ..        .    
lowQualScore                  :              1 99     1 1   444444444                   99        4    
consensus                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
Reference ( family-868 )      : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112562                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112563                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CATG
gi|112564                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCTGGTTTTG--ATACGTCG-CGTG
gi|112565                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCTGCTTCCTGGTTTCG--ATACGTCG-CGTG
gi|112566                     : AATCTAATTAAAA-T--CAGAT-C-TTC---------CACCCGCTCCCCGGTTTTG--ATATGTCG-CG
gi|112567                     : AATCTAATTAAAA-T--TATAT-C-TTC---------AATACGCTCCCCGGTTTTGATATACGTCG-CG
gi|112568                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCTCGGTTTTG--ATATGTTG-
gi|112569                     : AATCTAATTAAAAAT--TAGAT-CTTTC---------CAT-CGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112570                     : AATCTACTTAAAA-T--TAGAC-C-TTCAAATCCGCGTATCCGCTCCCCGGTTTTG--ATACGTCGTCGT
gi|112571                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCTGCTCCCCGGTATTG--ATATGTTG-CGT
gi|112572                     : AATCTAATTAAAA-T--TAGAT-C-TTT---------CATCCGCT-CCTGGTTTTG--ATACAT-G-CATG
gi|112573                     : AATCTAATTAAAA-T--TGGTT-C-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112574                     : AATCTAATTAAAA-T--TGGTTTC-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112575                     : AGTCTAATTAAAA-T--TAGAT-C-TAC---------CATCCGCTTCCCAGTTTTG--ATGCGTTG-CATG
gi|112576                     : AATCTAATTAAGA-T--TGGAT-C-GTC---------CATCCACTCCCTGGTTTTG--ATACAT
gi|112577                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CTTCCGCTCCCCAGTTTCG--ATACATTT-TGTG
gi|112578                     : AATCTAAATAAAA-TATTTGAT-A-TTC---------CATCCGCTCCCCTGTTTCA--GTTCGTTG-CGCG
gi|112579                     :  ATCCAATTAAAA-T--TAGAT-C-TTT---------CATCCGCTCCCCAGTTCCG--ATATGTCG-CGTG
gi|112580                     :   TCTAGTTAAAA-T--TAGAC-C-TTT---------CATCCGCTCCCCGGTTTTG--ATACG





Alignments
lowQualScore                  :              2 22     2 2   888888888                   22        2    
lowQualScore                  :              . ..     . .   .........                   ..        .    
lowQualScore                  :              1 99     1 1   444444444                   99        4    
consensus                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
Reference ( family-868 )      : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112562                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112563                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CATG
gi|112564                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCTGGTTTTG--ATACGTCG-CGTG
gi|112565                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCTGCTTCCTGGTTTCG--ATACGTCG-CGTG
gi|112566                     : AATCTAATTAAAA-T--CAGAT-C-TTC---------CACCCGCTCCCCGGTTTTG--ATATGTCG-CG
gi|112567                     : AATCTAATTAAAA-T--TATAT-C-TTC---------AATACGCTCCCCGGTTTTGATATACGTCG-CG
gi|112568                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCTCGGTTTTG--ATATGTTG-
gi|112569                     : AATCTAATTAAAAAT--TAGAT-CTTTC---------CAT-CGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112570                     : AATCTACTTAAAA-T--TAGAC-C-TTCAAATCCGCGTATCCGCTCCCCGGTTTTG--ATACGTCGTCGT
gi|112571                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCTGCTCCCCGGTATTG--ATATGTTG-CGT
gi|112572                     : AATCTAATTAAAA-T--TAGAT-C-TTT---------CATCCGCT-CCTGGTTTTG--ATACAT-G-CATG
gi|112573                     : AATCTAATTAAAA-T--TGGTT-C-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112574                     : AATCTAATTAAAA-T--TGGTTTC-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112575                     : AGTCTAATTAAAA-T--TAGAT-C-TAC---------CATCCGCTTCCCAGTTTTG--ATGCGTTG-CATG
gi|112576                     : AATCTAATTAAGA-T--TGGAT-C-GTC---------CATCCACTCCCTGGTTTTG--ATACAT
gi|112577                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CTTCCGCTCCCCAGTTTCG--ATACATTT-TGTG
gi|112578                     : AATCTAAATAAAA-TATTTGAT-A-TTC---------CATCCGCTCCCCTGTTTCA--GTTCGTTG-CGCG
gi|112579                     :  ATCCAATTAAAA-T--TAGAT-C-TTT---------CATCCGCTCCCCAGTTCCG--ATATGTCG-CGTG
gi|112580                     :   TCTAGTTAAAA-T--TAGAC-C-TTT---------CATCCGCTCCCCGGTTTTG--ATACG


blockSeqs                     :              A AT     T T   AAATCCGCG                   AT        T
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .         .
blockSeqs                     :              . .      . .   .                           .          
blockSeqs                     :              . .      . .   .                           .          


blockSeqCons                  : 
originalCons                  : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
finalCons                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG





Alignments
lowQualScore                  :              2 22     2 2   888888888                   22        2    
lowQualScore                  :              . ..     . .   .........                   ..        .    
lowQualScore                  :              1 99     1 1   444444444                   99        4    
consensus                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
Reference ( family-868 )      : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112562                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112563                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCCGGTTTTG--ATACGTCG-CATG
gi|112564                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCCGCTCCCTGGTTTTG--ATACGTCG-CGTG
gi|112565                     : AATCTAATTAAAA-T--TAGAC-C-TTC---------CATCTGCTTCCTGGTTTCG--ATACGTCG-CGTG
gi|112566                     : AATCTAATTAAAA-T--CAGAT-C-TTC---------CACCCGCTCCCCGGTTTTG--ATATGTCG-CG
gi|112567                     : AATCTAATTAAAA-T--TATAT-C-TTC---------AATACGCTCCCCGGTTTTGATATACGTCG-CG
gi|112568                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCCGCTCCTCGGTTTTG--ATATGTTG-
gi|112569                     : AATCTAATTAAAAAT--TAGAT-CTTTC---------CAT-CGCTCCCCGGTTTTG--ATACGTCG-CGTG
gi|112570                     : AATCTACTTAAAA-T--TAGAC-C-TTCAAATCCGCGTATCCGCTCCCCGGTTTTG--ATACGTCGTCGT
gi|112571                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CATCTGCTCCCCGGTATTG--ATATGTTG-CGT
gi|112572                     : AATCTAATTAAAA-T--TAGAT-C-TTT---------CATCCGCT-CCTGGTTTTG--ATACAT-G-CATG
gi|112573                     : AATCTAATTAAAA-T--TGGTT-C-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112574                     : AATCTAATTAAAA-T--TGGTTTC-TTC---------TATCTGCTCCCCGGTTTTG--ATAC-TCG-CGTG
gi|112575                     : AGTCTAATTAAAA-T--TAGAT-C-TAC---------CATCCGCTTCCCAGTTTTG--ATGCGTTG-CATG
gi|112576                     : AATCTAATTAAGA-T--TGGAT-C-GTC---------CATCCACTCCCTGGTTTTG--ATACAT
gi|112577                     : AATCTAATTAAAA-T--TAGAT-C-TTC---------CTTCCGCTCCCCAGTTTCG--ATACATTT-TGTG
gi|112578                     : AATCTAAATAAAA-TATTTGAT-A-TTC---------CATCCGCTCCCCTGTTTCA--GTTCGTTG-CGCG
gi|112579                     :  ATCCAATTAAAA-T--TAGAT-C-TTT---------CATCCGCTCCCCAGTTCCG--ATATGTCG-CGTG
gi|112580                     :   TCTAGTTAAAA-T--TAGAC-C-TTT---------CATCCGCTCCCCGGTTTTG--ATACG