lowQualScore : 44444444444444 1 1
lowQualScore : 00000000000000 55 5 9999999999 2 33 2 2 5 2 6
lowQualScore : .............. .. . .......... . .. . . . . .
lowQualScore : 00000000000000 33 6 7777777777 2 11 4 5 0 5 7
consensus : AGGTCGTCCCGAAAA-T--TT-G-ACAA-TTT--TATATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
Reference ( gi|118559 ) : AGGTCGTCCCGAAAA-T--A--G-ACAAATTT--TA-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TATAGTGCTTT
gi|118560 : AGGTTGTCCCGAAAA-T--TT-G-ACAA--TT--TA-ATTG----------T-TCG--TGTT-GTTGG-TCA-T-T
gi|118563 : AGGTCGTCCCGAGAA-TTTA----ACAA--TC--TA-ACTG----------T-TCT--TGTC-ATTGG-TCA-T-TTTAGTGCCTTct
gi|118564 : AGGTCGTACCGAAAA-T--TT-G-ACAA-TTT--TA-TATG----------T-TCG--TGTC-GTTGG-AC--T-TCTAGTGCTCT
gi|118561 : AGGTCGTCCCGTAAA-T--T--TTACAA-TTT--TGTACTG----------T-TCG--TGTC-GTTGA-TCA-T-TCGAGTGTTTT
gi|118562 : AGTTCATCCCGACAA-T--TT-G-ACAA-TTT--TATATTG----------T-TGT--TGTC-GTTGT-TCATT-TTTAGTGCTT
gi|118565 : AGGTCGTCCCGAAAATT--T--G-ACAA--TT--TA-ATTA----------T-TCG--TAT
gi|118568 : GGTCGTGCCGAAAA-TT-G--G-GTGAATTT--TATATTG----------TCTCG--TGTC-GTTGGGTCA-T-TTTAGTGCTTT
gi|118566 : GGTCGTCCCGAAAATT--T--G-AC-AGCTT--TA-ATTG----------T-TCG--TGTC-GTTGG-TTA-G-TTTAGTG
gi|118567 : GGTCG-CCCGAAAA-T--CTTG-ACGAATTT--TATATTG----------T-TCG--TG-C-GTTGA-TCA-T-TTTAGTGGTTTtgtt
gi|118570 : GGTCATTCCAAGAA-T--TT-G-ACGA--TT--TC-ATTG----------T-TAA--TGTG-GTTGG-TCA-T-TTTAGTGCTTT
gi|118569 : GGT-GTCCCGAAAATT--T--G-AC-AATTT--TA-ATTGTTCGATTGGTT-TCG--TGTCGGTTGG-TCA-T-T
gi|118571 : GGTCATCTCGTAAA-T--TT-G-ACAA--TT--TA-ATTG----------T-TCG--TGTC-AT
gi|118573 : GTCGTCCAGAAAA-T--T--T-ACAA-TTT--TATATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118572 : GTCGTCCAGAAAA-T--T--T-ACAA-TTT--TATATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118575 : GTCTTCCCGAAAA-T--TT-G-ACAATTTTA-TA-AT-G----------T-TCC--TGTT-GTTGG-TCATT-TTTAGTGCT
gi|118574 : GTCGTCCCGAAAATT--T--G-AC-AATTC--TATATT-----------T-TTG--CGTC-GTAAG-TCA-T-T
gi|118576 : TTGTCCCGAAAA-T--TT-G-ACATTTTTCATA-ATTC----------T-TTA--TGTC-GTTGG-TCA-TCTTTAGTGCTCTtt
gi|118577 : --G-ACAA-TTT--TA-ACTG----------T-TCGCATGTC-GTTGG-TCA-T-T
Alignments
lowQualScore : 11
lowQualScore : 2 4 2 2 33 9999999999 2 22 2 2 4 2
lowQualScore : . . . . .. .......... . .. . . . .
lowQualScore : 1 2 1 1 77 2222222222 1 99 2 4 7 4
consensus : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
Reference ( family-859 ) : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
gi|118559 : AGGTCGTCCCGAAAAT-A-GAC-AAATTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TATAGTGCTTT
gi|118560 : AGGTTGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTT-GTTGG-TCA-T-TCT
gi|118561 : AGGTCGTCCCGTAAAT-TTTAC-AA-TTTT-GT-ACTG----------T-TCG--TGTC-GTTGA-TCA-T-TCGAGTGTTTT
gi|118562 : AGTTCATCCCGACAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TGT--TGTC-GTTGT-TCATT-TTTAGTGCTT
gi|118563 : AGGTCGTCCCGAGAAT-TTAAC-AA-TCT--A--ACTG----------T-TCT--TGTC-ATTGG-TCA-T-TTTAGTGCCTT
gi|118564 : AGGTCGTACCGAAAAT-TTGAC-AA-TTTT-AT-A-TG----------T-TCG--TGTC-GTTGG-AC--T-TCTAGTGCTCT
gi|118565 : AGGTCGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTA----------T-TCG--TAT
gi|118566 : GGTCGTCCCGAAAAT-TTGAC-AG-CTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TTA-G-TTTAGTG
gi|118567 : GGTCG-CCCGAAAATCTTGACGAA-TTTT-AT-ATTG----------T-TCG--TG-C-GTTGA-TCA-T-TTTAGTGGTTTtgtt
gi|118568 : GGTCGTGCCGAAAAT-TGGGTGAA-TTTT-AT-ATTG----------TCTCG--TGTC-GTTGGGTCA-T-TTTAGTGCTTT
gi|118569 : GGT-GTCCCGAAAAT-TTGAC-AA-TTTT-A--ATTGTTCGATTGGTT-TCG--TGTCGGTTGG-TCA-T-
gi|118570 : GGTCATTCCAAGAAT-TTGAC-GA-TTTC-AT---TG----------T-TAA--TGTG-GTTGG-TCA-T-TTTAGTGCTTT
gi|118571 : GGTCATCTCGTAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTC-AT
gi|118572 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118573 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118574 : GTCGTCCCGAAAAT-TTGAC-AA-TTCT-AT-ATT-----------T-TTG--CGTC-GTAAG-TCA-T-TTT
gi|118575 : GTCTTCCCGAAAAT-TTGAC-AA-TTTT-AT-AATG----------T-TCC--TGTT-GTTGG-TCATT-TTTAGTGCT
gi|118576 : TTGTCCCGAAAAT-TTGAC-AT-TTTTCATAATTC----------T-TTA--TGTC-GTTGG-TCA-TCTTTAGTGCTCT
gi|118577 : GAAAGT-TTGAC-AA-TTTT-A--ACTG----------T-TCGCATGTC-GTTGG-TCA-T-
Alignments
lowQualScore : 11
lowQualScore : 2 4 2 2 33 9999999999 2 22 2 2 4 2
lowQualScore : . . . . .. .......... . .. . . . .
lowQualScore : 1 2 1 1 77 2222222222 1 99 2 4 7 4
consensus : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
Reference ( family-859 ) : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
gi|118559 : AGGTCGTCCCGAAAAT-A-GAC-AAATTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TATAGTGCTTT
gi|118560 : AGGTTGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTT-GTTGG-TCA-T-TCT
gi|118561 : AGGTCGTCCCGTAAAT-TTTAC-AA-TTTT-GT-ACTG----------T-TCG--TGTC-GTTGA-TCA-T-TCGAGTGTTTT
gi|118562 : AGTTCATCCCGACAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TGT--TGTC-GTTGT-TCATT-TTTAGTGCTT
gi|118563 : AGGTCGTCCCGAGAAT-TTAAC-AA-TCT--A--ACTG----------T-TCT--TGTC-ATTGG-TCA-T-TTTAGTGCCTT
gi|118564 : AGGTCGTACCGAAAAT-TTGAC-AA-TTTT-AT-A-TG----------T-TCG--TGTC-GTTGG-AC--T-TCTAGTGCTCT
gi|118565 : AGGTCGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTA----------T-TCG--TAT
gi|118566 : GGTCGTCCCGAAAAT-TTGAC-AG-CTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TTA-G-TTTAGTG
gi|118567 : GGTCG-CCCGAAAATCTTGACGAA-TTTT-AT-ATTG----------T-TCG--TG-C-GTTGA-TCA-T-TTTAGTGGTTTtgtt
gi|118568 : GGTCGTGCCGAAAAT-TGGGTGAA-TTTT-AT-ATTG----------TCTCG--TGTC-GTTGGGTCA-T-TTTAGTGCTTT
gi|118569 : GGT-GTCCCGAAAAT-TTGAC-AA-TTTT-A--ATTGTTCGATTGGTT-TCG--TGTCGGTTGG-TCA-T-
gi|118570 : GGTCATTCCAAGAAT-TTGAC-GA-TTTC-AT---TG----------T-TAA--TGTG-GTTGG-TCA-T-TTTAGTGCTTT
gi|118571 : GGTCATCTCGTAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTC-AT
gi|118572 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118573 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118574 : GTCGTCCCGAAAAT-TTGAC-AA-TTCT-AT-ATT-----------T-TTG--CGTC-GTAAG-TCA-T-TTT
gi|118575 : GTCTTCCCGAAAAT-TTGAC-AA-TTTT-AT-AATG----------T-TCC--TGTT-GTTGG-TCATT-TTTAGTGCT
gi|118576 : TTGTCCCGAAAAT-TTGAC-AT-TTTTCATAATTC----------T-TTA--TGTC-GTTGG-TCA-TCTTTAGTGCTCT
gi|118577 : GAAAGT-TTGAC-AA-TTTT-A--ACTG----------T-TCGCATGTC-GTTGG-TCA-T-
blockSeqs : C G . C TA TTCGATTGGT C CA G G T C
blockSeqs : . G . . T . . . . . T .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T*
originalCons : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
finalCons : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
Alignments
lowQualScore : 11
lowQualScore : 2 4 2 2 33 9999999999 2 22 2 2 4 2
lowQualScore : . . . . .. .......... . .. . . . .
lowQualScore : 1 2 1 1 77 2222222222 1 99 2 4 7 4
consensus : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
Reference ( family-859 ) : AGGTCGTCCCGAAAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TTTAGTGCTTT
gi|118559 : AGGTCGTCCCGAAAAT-A-GAC-AAATTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TCA-T-TATAGTGCTTT
gi|118560 : AGGTTGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTT-GTTGG-TCA-T-TCT
gi|118561 : AGGTCGTCCCGTAAAT-TTTAC-AA-TTTT-GT-ACTG----------T-TCG--TGTC-GTTGA-TCA-T-TCGAGTGTTTT
gi|118562 : AGTTCATCCCGACAAT-TTGAC-AA-TTTT-AT-ATTG----------T-TGT--TGTC-GTTGT-TCATT-TTTAGTGCTT
gi|118563 : AGGTCGTCCCGAGAAT-TTAAC-AA-TCT--A--ACTG----------T-TCT--TGTC-ATTGG-TCA-T-TTTAGTGCCTT
gi|118564 : AGGTCGTACCGAAAAT-TTGAC-AA-TTTT-AT-A-TG----------T-TCG--TGTC-GTTGG-AC--T-TCTAGTGCTCT
gi|118565 : AGGTCGTCCCGAAAAT-TTGAC-AA--TTT-A--ATTA----------T-TCG--TAT
gi|118566 : GGTCGTCCCGAAAAT-TTGAC-AG-CTTT-A--ATTG----------T-TCG--TGTC-GTTGG-TTA-G-TTTAGTG
gi|118567 : GGTCG-CCCGAAAATCTTGACGAA-TTTT-AT-ATTG----------T-TCG--TG-C-GTTGA-TCA-T-TTTAGTGGTTTtgtt
gi|118568 : GGTCGTGCCGAAAAT-TGGGTGAA-TTTT-AT-ATTG----------TCTCG--TGTC-GTTGGGTCA-T-TTTAGTGCTTT
gi|118569 : GGT-GTCCCGAAAAT-TTGAC-AA-TTTT-A--ATTGTTCGATTGGTT-TCG--TGTCGGTTGG-TCA-T-
gi|118570 : GGTCATTCCAAGAAT-TTGAC-GA-TTTC-AT---TG----------T-TAA--TGTG-GTTGG-TCA-T-TTTAGTGCTTT
gi|118571 : GGTCATCTCGTAAAT-TTGAC-AA--TTT-A--ATTG----------T-TCG--TGTC-AT
gi|118572 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118573 : GTCGTCCAGAAAAT-TT-AC-AA-TTTT-AT-ATTG----------T-TCG--TGTC-GTTGT-TCA-T-TTTAGTGGTTT
gi|118574 : GTCGTCCCGAAAAT-TTGAC-AA-TTCT-AT-ATT-----------T-TTG--CGTC-GTAAG-TCA-T-TTT
gi|118575 : GTCTTCCCGAAAAT-TTGAC-AA-TTTT-AT-AATG----------T-TCC--TGTT-GTTGG-TCATT-TTTAGTGCT
gi|118576 : TTGTCCCGAAAAT-TTGAC-AT-TTTTCATAATTC----------T-TTA--TGTC-GTTGG-TCA-TCTTTAGTGCTCT
gi|118577 : GAAAGT-TTGAC-AA-TTTT-A--ACTG----------T-TCGCATGTC-GTTGG-TCA-T-