lowQualScore : 11
lowQualScore : 11 6 77 2 4 4 66 4 4 99
lowQualScore : .. . .. . . . .. . . ..
lowQualScore : 99 7 77 2 4 4 11 4 4 77
consensus : TTTGA--CTTTCTCGACT-GCTACTC-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
Reference ( gi|42047 ) : TTTGA--CTTTCTCGACT-GCTACTT-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42048 : TTTGA--CTTTCTCGACT-GCTACTT-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42049 : TTTGA--CTTTCTCGACT-GCTA-TT-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42051 : TTTGA--CTTTCTCGACTTGCTACTC-C-GCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42050 : TTTGA--CTTTCTCGACTTGCTACTC-C-GCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42046 : TTTGA--CTTTCTCGACT-GCTATTC-C-GCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42045 : TTTGA--CTTTCTCGACT-GCTATTC-C-GCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42044 : TTTGA--CTTTCTCGACT-GCTATTC-C-GCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42058 : TTTGA--CTTTCTCGACT-GCTACTC-C-GCT-G-TTTGAT--GACTG-TTTG-A--C-TTATCGACT
gi|42055 : TTTGA--CTTTCTCGACT-GCTACTC-C--CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42054 : TTTGA--CTTTCTCGACT-GCTACTC-C--CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42053 : TTTGA---TTTCTCGACT-GCTATTC-C-GCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42052 : TTTGA---TTTCTCGACT-GCTATTC-C-GCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42057 : TTTGAT-CTTTCTCGACT-GCTGTTC-C-GCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42056 : TTTGAT-CTTTCTCGACT-GCTGTTC-C-GCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42059 : TTTGAACTTTTCTCGACT-GCTACTTCC-GCT-G-TTTGAT--GA-TG-TTTG-A--CTTTCTCGACTG
gi|42060 : TTTGA--CTT-ATCGACTTGCTACTT-CCGCT-G-TT-GAT--GACTG-TTTG-AACTTTTCTCGACTG
gi|42062 : TTTGAA-CTTTCTCGACT-GCTACTTCC-GCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
gi|42061 : TTTGAA-CTTTCTCGACT-GCTACTTCC-GCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
Alignments
lowQualScore : 11
lowQualScore : 11 6 6 2 4 4 55 4 4 99
lowQualScore : .. . . . . . .. . . ..
lowQualScore : 33 3 3 1 2 2 88 2 2 22
consensus : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
Reference ( family-858 ) : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42044 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42045 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42046 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42047 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42048 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42049 : TTTGA--CTTTCTCGACT-GCTAT-T-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42050 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42051 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42052 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42053 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42054 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42055 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42056 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42057 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42058 : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--C-TTATCGACT
gi|42059 : TTTGAACTTTTCTCGACT-GCTACTT-CCGCT-G-TTTGAT--GA-TG-TTTG-A--CTTTCTCGACTG
gi|42060 : TTTGA--CTT-ATCGACTTGCTAC-TTCCGCT-G-TT-GAT--GACTG-TTTG-AACTTTTCTCGACTG
gi|42061 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
gi|42062 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
Alignments
lowQualScore : 11
lowQualScore : 11 6 6 2 4 4 55 4 4 99
lowQualScore : .. . . . . . .. . . ..
lowQualScore : 33 3 3 1 2 2 88 2 2 22
consensus : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
Reference ( family-858 ) : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42044 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42045 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42046 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42047 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42048 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42049 : TTTGA--CTTTCTCGACT-GCTAT-T-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42050 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42051 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42052 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42053 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42054 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42055 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42056 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42057 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42058 : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--C-TTATCGACT
gi|42059 : TTTGAACTTTTCTCGACT-GCTACTT-CCGCT-G-TTTGAT--GA-TG-TTTG-A--CTTTCTCGACTG
gi|42060 : TTTGA--CTT-ATCGACTTGCTAC-TTCCGCT-G-TT-GAT--GACTG-TTTG-AACTTTTCTCGACTG
gi|42061 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
gi|42062 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
blockSeqs : AC T T T G C CC T A AC
blockSeqs : T T T . G C CC T A T
blockSeqs : T T T . . . . . . T
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
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blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : **
originalCons : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
finalCons : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
Alignments
lowQualScore : 11
lowQualScore : 11 6 6 2 4 4 55 4 4 99
lowQualScore : .. . . . . . .. . . ..
lowQualScore : 33 3 3 1 2 2 88 2 2 22
consensus : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
Reference ( family-858 ) : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42044 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42045 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42046 : TTTGA--CTTTCTCGACT-GCTAT-T-CCGCG-G-TTTGAT--GACTG-TTTG-AT-CTTTCTCGACTG
gi|42047 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42048 : TTTGA--CTTTCTCGACT-GCTAC-T-TCGCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42049 : TTTGA--CTTTCTCGACT-GCTAT-T-C-GCT-G-TTTGAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42050 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42051 : TTTGA--CTTTCTCGACTTGCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTGAA--CTTTCTCGACTG
gi|42052 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42053 : TTTGA---TTTCTCGACT-GCTAT-T-CCGCT-G-TT-GAT--GACTG-TTTG-A--CTTTCTCGACTG
gi|42054 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42055 : TTTGA--CTTTCTCGACT-GCTAC-T-CC-CT-GCTTTGAT--GACTG-TTTG-A--CTTTCTCGACT
gi|42056 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42057 : TTTGAT-CTTTCTCGACT-GCTGT-T-CCGCT-G-TTTGAT--GAC-G-TTTG-A--CTTTCTCGACTG
gi|42058 : TTTGA--CTTTCTCGACT-GCTAC-T-CCGCT-G-TTTGAT--GACTG-TTTG-A--C-TTATCGACT
gi|42059 : TTTGAACTTTTCTCGACT-GCTACTT-CCGCT-G-TTTGAT--GA-TG-TTTG-A--CTTTCTCGACTG
gi|42060 : TTTGA--CTT-ATCGACTTGCTAC-TTCCGCT-G-TT-GAT--GACTG-TTTG-AACTTTTCTCGACTG
gi|42061 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG
gi|42062 : TTTGAA-CTTTCTCGACT-GCTACTT-CCGCTGG-TTTGTTCCG-CTGTTTTG-A--CTTTCTCGACTG