lowQualScore : 111 111111111111111
lowQualScore : 888 7777 3 3 2 2 7 2 2 2 2 2 33 2 33 2 33 2 666666666666666 44 3
lowQualScore : ... .... . . . . . . . . . . .. . .. . .. . ............... .. .
lowQualScore : 000 7777 3 1 9 7 1 4 5 4 4 4 22 4 22 4 44 5 777777777777777 66 3
consensus : TTCAATTCA--CTGA----ACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAAT--AA-TTGCAAATAC
Reference ( gi|100845 ) : TTCAATTCA--GTGA----ACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-GTCTAAT--AA-TTGCAAATAC
gi|100844 : TTCAATTCA--CTGA----ACA-CT-G-TGTT-CAGAAAGC-AT-GAAG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TA-ATCTAAT--AA-TTGCAAATAC
gi|100846 : TTCAATTCA--CTGA----ACA-CT-G-TGTT-CAGACAGC-AT-GACG-ACCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGA-AAATCA-T---------TG-ATCTAAT--AA-TTGCAAATAC
gi|100847 : TTCA-TTCA--CTGA----ACG-CT-G-TGTT-CAGAAAGC-AT--ACG-ACCAGTC-CGT-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-----------TG-ATCTAAT--AA-TTGCAAATAC
gi|100848 : TTCAATTCA--CTGA----ACA-CT-G-T--T-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GA-TG-C--T-ACC-AT--CA-TGTATAA
gi|100849 : TTCAATTCA--CTGA----ATA-CT-G-TGTT-CA-AAAGCTCT-GACGCCCCAGTC-C-T-T--GGTTG-CTTT-ACCAAG--CA-TTG-CAAATcacttatattt
gi|100850 : TTCAATTCT--CTGA----ATG-CT-G-TGTT-CAGAAAGC-AT-GAC
gi|100851 : CAATTCA--CTGA----AGA-TT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATTA-T---------TG-ATCTAAT--AA-TTGCAAATAC
gi|100852 : CAATTCA--CTAA----ACG-CT-G-TGTTTCAGAA-GC-AT-GATG-TCCAGTC-C-T-T--GATTG-C----ACCAAT--CATTTGATAAATCATT---------TG-ATCTAAT--AATTTACAAATAC
gi|100853 : CAATTCA--TTTACCTGACG-CCAG-T-TT-CAGAAAGCCAT-GACA--CAAGTC-C-T-T--GATTG-C--T-ACCAAT--TA-TTGATAAATCA-G---------TG-ATCTAAC--AA-TTGCAAAT
gi|100854 : ATTCACTGTAA----AGGACT-GGTGTT-CAGAAAGC-AT-GACG-TCCAGTTGC-TGT--GATTGTT--T-ACC
gi|100855 : A----ACA-CC-A-TGTT-CAGAAAGC-AT-GAAA-TACTGTT-C-T-T--GATTG-C--T-TCTAGT--CA-TTTATAGATTA-T---------TG-ATTCTAT--AA-TTACAAATAC
gi|100856 : -CC-G-TGTT-CCTAAAAC-AT-GGCG-TCCTTTC-C-T-T--GATGG-C--T-GCCAAT--TA-TTAAT
gi|100857 : a-G-TGTT-CAGAAAGCAAT-GA-A-TCCAGTC-C-T-T--GATTG-C--T-ACC-AT--CA-TTGATAATACA-T---------T
gi|100858 : -TGTT-CAGAAGCC-ATAGACG-TCCAGTT-T-T-TTTGATGA-C--TTACCAATTACG-TTG-TGAATCA-TAATCAGGTATGTATCTAAT--AA-TTGCAAATAC
gi|100859 : -CAGAAATC-AT-GCCG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAAT--AA-TTGCAAATAC
gi|100860 : AAAGC-AT-GACG-TCAACTC-C-T-T--GATGG-A--T-ACCAAT--CA-TTCATAAATCA-T---------TG-ATT---T--AA-TTGCACATAC
gi|100861 : AGC-AT-GACG-TCCTGCA-C-T-T--GATTA-C--T-AACAAA--CA-TTGAT---T-----------------TTTAATAAAA-TCGCAAATAC
gi|100862 : C-C-T-T--GATTG-C--T-ACCAAT--CA-TTGA----------------------TCTAAT--AA-TTGCAAATAC
Alignments
lowQualScore : 111111111
lowQualScore : 99999 44 3 2 2 2 6 2 2 2 2 2 33 2 33 2 33 2 2 111111111 3 3
lowQualScore : ..... .. . . . . . . . . . . .. . .. . .. . . ......... . .
lowQualScore : 11111 66 1 9 7 5 7 2 4 2 2 2 11 2 11 2 22 4 9 444444444 1 1
consensus : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
Reference ( family-857 ) : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100844 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGAAAGC-AT-GAAG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TA-ATCTAATAA-TTGCAAATAC
gi|100845 : TTCAATTCA-----GTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-GTCTAATAA-TTGCAAATAC
gi|100846 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGACAGC-AT-GACG-ACCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGA-AAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100847 : TTCA-TTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT--ACG-ACCAGTC-CGT-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-----------TG-ATCTAATAA-TTGCAAATAC
gi|100848 : TTCAATTCA-----CTG--AACA-CT-G-T--T-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GA-TG-C--T-ACC-AT--CA-TGTATAA
gi|100849 : TTCAATTCA-----CTG--AATA-CT-G-TGTT-CA-AAAGCTCT-GACGCCCCAGTC-C-T-T--GGTTG-CTTT-ACCAAG--CA-TTG-CAAATcacttatattt
gi|100850 : TTCAATTCT-----CTG--AATG-CT-G-TGTT-CAGAAAGC-AT-GAC
gi|100851 : CAATTCA-----CTG--AAGA-TT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATTA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100852 : CAATTCA-----CTA--AACG-CT-G-TGTTTCAGAA-GC-AT-GATG-TCCAGTC-C-T-T--GATTG-C----ACCAAT--CATTTGATAAATCATT---------TG-ATCTAATAATTTACAAATAC
gi|100853 : CAATTCATTTACCTG--A-CG-CCAG-T-TT-CAGAAAGCCAT-GACA--CAAGTC-C-T-T--GATTG-C--T-ACCAAT--TA-TTGATAAATCA-G---------TG-ATCTAACAA-TTGCAAAT
gi|100854 : ATTCA-----CTGTAAAGGACT-GGTGTT-CAGAAAGC-AT-GACG-TCCAGTTGC-TGT--GATTGTT--T-ACC
gi|100855 : --AACA-CC-A-TGTT-CAGAAAGC-AT-GAAA-TACTGTT-C-T-T--GATTG-C--T-TCTAGT--CA-TTTATAGATTA-T---------TG-ATTCTATAA-TTACAAATAC
gi|100856 : -CC-G-TGTT-CCTAAAAC-AT-GGCG-TCCTTTC-C-T-T--GATGG-C--T-GCCAAT--TA-TTAAT
gi|100857 : a-G-TGTT-CAGAAAGCAAT-GA-A-TCCAGTC-C-T-T--GATTG-C--T-ACC-AT--CA-TTGATAATACA-T---------T
gi|100858 : -TGTT-CAGAAGCC-ATAGACG-TCCAGTT-T-T-TTTGATGA-C--TTACCAATTACG-TTG-TGAATCA-TAATCAGGTATGTATCTAATAA-TTGCAAATAC
gi|100859 : -CAGAAATC-AT-GCCG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100860 : AAAGC-AT-GACG-TCAACTC-C-T-T--GATGG-A--T-ACCAAT--CA-TTCATAAATCA-T---------TG-ATT---TAA-TTGCACATAC
gi|100861 : AGC-AT-GACG-TCCTGCA-C-T-T--GATTA-C--T-AACAAA--CA-TTGAT---TT--T---------TA-A--TAA-AA-TCGCAAATAC
gi|100862 : C-C-T-T--GATTG-C--T-ACCAAT--C------------A-T---------TG-ATCTAATAA-TTGCAAATAC
Alignments
lowQualScore : 111111111
lowQualScore : 99999 44 3 2 2 2 6 2 2 2 2 2 33 2 33 2 33 2 2 111111111 3 3
lowQualScore : ..... .. . . . . . . . . . . .. . .. . .. . . ......... . .
lowQualScore : 11111 66 1 9 7 5 7 2 4 2 2 2 11 2 11 2 22 4 9 444444444 1 1
consensus : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
Reference ( family-857 ) : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100844 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGAAAGC-AT-GAAG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TA-ATCTAATAA-TTGCAAATAC
gi|100845 : TTCAATTCA-----GTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-GTCTAATAA-TTGCAAATAC
gi|100846 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGACAGC-AT-GACG-ACCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGA-AAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100847 : TTCA-TTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT--ACG-ACCAGTC-CGT-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-----------TG-ATCTAATAA-TTGCAAATAC
gi|100848 : TTCAATTCA-----CTG--AACA-CT-G-T--T-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GA-TG-C--T-ACC-AT--CA-TGTATAA
gi|100849 : TTCAATTCA-----CTG--AATA-CT-G-TGTT-CA-AAAGCTCT-GACGCCCCAGTC-C-T-T--GGTTG-CTTT-ACCAAG--CA-TTG-CAAATcacttatattt
gi|100850 : TTCAATTCT-----CTG--AATG-CT-G-TGTT-CAGAAAGC-AT-GAC
gi|100851 : CAATTCA-----CTG--AAGA-TT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATTA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100852 : CAATTCA-----CTA--AACG-CT-G-TGTTTCAGAA-GC-AT-GATG-TCCAGTC-C-T-T--GATTG-C----ACCAAT--CATTTGATAAATCATT---------TG-ATCTAATAATTTACAAATAC
gi|100853 : CAATTCATTTACCTG--A-CG-CCAG-T-TT-CAGAAAGCCAT-GACA--CAAGTC-C-T-T--GATTG-C--T-ACCAAT--TA-TTGATAAATCA-G---------TG-ATCTAACAA-TTGCAAAT
gi|100854 : ATTCA-----CTGTAAAGGACT-GGTGTT-CAGAAAGC-AT-GACG-TCCAGTTGC-TGT--GATTGTT--T-ACC
gi|100855 : --AACA-CC-A-TGTT-CAGAAAGC-AT-GAAA-TACTGTT-C-T-T--GATTG-C--T-TCTAGT--CA-TTTATAGATTA-T---------TG-ATTCTATAA-TTACAAATAC
gi|100856 : -CC-G-TGTT-CCTAAAAC-AT-GGCG-TCCTTTC-C-T-T--GATGG-C--T-GCCAAT--TA-TTAAT
gi|100857 : a-G-TGTT-CAGAAAGCAAT-GA-A-TCCAGTC-C-T-T--GATTG-C--T-ACC-AT--CA-TTGATAATACA-T---------T
gi|100858 : -TGTT-CAGAAGCC-ATAGACG-TCCAGTT-T-T-TTTGATGA-C--TTACCAATTACG-TTG-TGAATCA-TAATCAGGTATGTATCTAATAA-TTGCAAATAC
gi|100859 : -CAGAAATC-AT-GCCG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100860 : AAAGC-AT-GACG-TCAACTC-C-T-T--GATGG-A--T-ACCAAT--CA-TTCATAAATCA-T---------TG-ATT---TAA-TTGCACATAC
gi|100861 : AGC-AT-GACG-TCCTGCA-C-T-T--GATTA-C--T-AACAAA--CA-TTGAT---TT--T---------TA-A--TAA-AA-TCGCAAATAC
gi|100862 : C-C-T-T--GATTG-C--T-ACCAAT--C------------A-T---------TG-ATCTAATAA-TTGCAAATAC
blockSeqs : TTTAC TA A A G T T A C G G G TT T TT T TA T T AATCAGGTA T T
blockSeqs : . . . . . . C . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
finalCons : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
Alignments
lowQualScore : 111111111
lowQualScore : 99999 44 3 2 2 2 6 2 2 2 2 2 33 2 33 2 33 2 2 111111111 3 3
lowQualScore : ..... .. . . . . . . . . . . .. . .. . .. . . ......... . .
lowQualScore : 11111 66 1 9 7 5 7 2 4 2 2 2 11 2 11 2 22 4 9 444444444 1 1
consensus : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
Reference ( family-857 ) : TTCAATTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100844 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGAAAGC-AT-GAAG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TA-ATCTAATAA-TTGCAAATAC
gi|100845 : TTCAATTCA-----GTG--AACG-CT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-GTCTAATAA-TTGCAAATAC
gi|100846 : TTCAATTCA-----CTG--AACA-CT-G-TGTT-CAGACAGC-AT-GACG-ACCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGA-AAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100847 : TTCA-TTCA-----CTG--AACG-CT-G-TGTT-CAGAAAGC-AT--ACG-ACCAGTC-CGT-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-----------TG-ATCTAATAA-TTGCAAATAC
gi|100848 : TTCAATTCA-----CTG--AACA-CT-G-T--T-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GA-TG-C--T-ACC-AT--CA-TGTATAA
gi|100849 : TTCAATTCA-----CTG--AATA-CT-G-TGTT-CA-AAAGCTCT-GACGCCCCAGTC-C-T-T--GGTTG-CTTT-ACCAAG--CA-TTG-CAAATcacttatattt
gi|100850 : TTCAATTCT-----CTG--AATG-CT-G-TGTT-CAGAAAGC-AT-GAC
gi|100851 : CAATTCA-----CTG--AAGA-TT-G-TGTT-CAGAAAGC-AT-GACG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATTA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100852 : CAATTCA-----CTA--AACG-CT-G-TGTTTCAGAA-GC-AT-GATG-TCCAGTC-C-T-T--GATTG-C----ACCAAT--CATTTGATAAATCATT---------TG-ATCTAATAATTTACAAATAC
gi|100853 : CAATTCATTTACCTG--A-CG-CCAG-T-TT-CAGAAAGCCAT-GACA--CAAGTC-C-T-T--GATTG-C--T-ACCAAT--TA-TTGATAAATCA-G---------TG-ATCTAACAA-TTGCAAAT
gi|100854 : ATTCA-----CTGTAAAGGACT-GGTGTT-CAGAAAGC-AT-GACG-TCCAGTTGC-TGT--GATTGTT--T-ACC
gi|100855 : --AACA-CC-A-TGTT-CAGAAAGC-AT-GAAA-TACTGTT-C-T-T--GATTG-C--T-TCTAGT--CA-TTTATAGATTA-T---------TG-ATTCTATAA-TTACAAATAC
gi|100856 : -CC-G-TGTT-CCTAAAAC-AT-GGCG-TCCTTTC-C-T-T--GATGG-C--T-GCCAAT--TA-TTAAT
gi|100857 : a-G-TGTT-CAGAAAGCAAT-GA-A-TCCAGTC-C-T-T--GATTG-C--T-ACC-AT--CA-TTGATAATACA-T---------T
gi|100858 : -TGTT-CAGAAGCC-ATAGACG-TCCAGTT-T-T-TTTGATGA-C--TTACCAATTACG-TTG-TGAATCA-TAATCAGGTATGTATCTAATAA-TTGCAAATAC
gi|100859 : -CAGAAATC-AT-GCCG-TCCAGTC-C-T-T--GATTG-C--T-ACCAAT--CA-TTGATAAATCA-T---------TG-ATCTAATAA-TTGCAAATAC
gi|100860 : AAAGC-AT-GACG-TCAACTC-C-T-T--GATGG-A--T-ACCAAT--CA-TTCATAAATCA-T---------TG-ATT---TAA-TTGCACATAC
gi|100861 : AGC-AT-GACG-TCCTGCA-C-T-T--GATTA-C--T-AACAAA--CA-TTGAT---TT--T---------TA-A--TAA-AA-TCGCAAATAC
gi|100862 : C-C-T-T--GATTG-C--T-ACCAAT--C------------A-T---------TG-ATCTAATAA-TTGCAAATAC