lowQualScore : 333333333333333333333333333333333
lowQualScore : 11111 1 111111 2 111 1 11111 444444444444444444444 111 1111 111 111 111 666666666666666666666666666666666 333333333 2
lowQualScore : 55 2 3 2 5 2 2 2 1 2 2 2 2 3 2 33 8 2 2 2 2 666 2 33 2 2 2 5 2 2 555 9 2 00000 66 6666 33 2 2 7777 777777 7 3 3 0 3 555 0 3 3 999999 3 000 4 7777 55555 6 3 000000000000000000000 3 77 1 3 666 8 666 2222 55 333 555 4 8 4 6 4 4 6 1 7 3 3 33 2 5 77 5 666 2 2 8888 444 33 2 5 5 2 5 33 5555 999 99 2 8888888 2 111111111111111111111111111111111 111111111 2 5 5 8 2
lowQualScore : .. . . . . . . . . . . . . . . .. . . . . . ... . .. . . . . . . ... . . ..... .. .... .. . . .... ...... . . . . . ... . . . ...... . ... . .... ..... . . ..................... . .. . . ... . ... .... .. ... ... . . . . . . . . . . . .. . . .. . ... . . .... ... .. . . . . . .. .... ... .. . ....... . ................................. ......... . . . . .
lowQualScore : 11 9 7 9 7 9 9 8 3 9 9 9 9 0 5 99 4 9 9 9 9 666 9 99 9 9 9 7 9 9 000 5 9 00000 88 1111 99 9 5 1111 222222 3 1 3 5 3 888 4 3 3 666666 3 444 6 1111 44444 7 3 111111111111111111111 2 55 4 6 444 9 888 8888 66 333 666 4 9 4 2 4 6 4 6 3 3 3 88 9 7 99 7 888 7 7 0000 777 77 7 3 3 7 3 77 7777 333 22 7 7777777 7 222222222222222222222222222222222 444444444 9 7 7 6 9
consensus : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACGTCC-G-TGT-GCTCA-GGTAATGGCCGCTGT--GTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAAAGAA-ACG-TACACCCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAAGATTTT--GTGTT-CCAAC-GAAAAG--CAAA---GAATGAT-ACGTATTTTGA-ATTATCT-GAAA-ATATTATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTC-G-TG-T-A--CA----T---AAATTCA-GTT-CGA-------A-CGTATATTGA--------------------------ATAT--TTGAAC--G--TTT-AGTGGAACCCAGTTG-CA-T-CCAAATT-CCATGTAA
Reference ( gi|107014 ) : TTTTTTTACATCATAGATATAG-ACGA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTGT--GTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAAT----C--A-ATGC----ATA-----CTTAAAGAA-ACG-TACNCCCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAGATTTT--GTGTT-CCAAC-GAAAAG--CAAA---GAATGAT-ACGTATTTTGA-ATTATCT-GAAA-ATATTATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTC-G-TG-T-A--CA----T---AAATTCA-GTT-TGA-------A-CGTATATTGANNNNNNNNNNNNNNNNNNNNNNNNNAATATAATTGAAC--G--TT--AGTGGAACCCAGTTG-CA-T-CCAAA-T-CCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTGT--GTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAAAGAA-ACG-TATATGTAG-T---TG-TCTGTA--------CCGA------CA-TTTCAAAAGC----ATA-CT-----AGAGAA-A-G------A-TTTTG---TGTTT---CCAACG-----AAAAGC-------AAAG-AATGA-TAC--GTATT-T---------------AT---GAAT-------TATCTGGA-AATAT---------TAT---TTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTC-G-TG-T-A--CA----T---AAATTCA-GTT-CGA-------A-CGTATATTGA--------------------------ATAT---TGAAC--GTTTT--AGTGGAACCCAGTTG-CA-T-CCAAATT-CCATGTAA
gi|107006 : tTTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT-T--GTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAA--AA-ACG-TA
gi|107013 : tTTTTTTTACATCATAGATATAG-ACGA-AATGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTGT--GTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-ATGC----ATA-----TTTAAAGAA-ACGCTACtatgtagtttgctgtaccgacatttcaaaagcatagctagagaaagatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : TTTTTTTAC-TCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT-T--GTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAA--AA-ACG-Tatgttgtttgtctgtaccaacatttcaaaagcatagctagagaaaagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107008 : tTTTTTTTACATCATAGATATAGGATGA-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT-T--GTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAA--AA-ACG-Tcatatgtagtttgctgtaccgacatttcaaaagcatactagagaaagattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107015 : tTCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTGT--GTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAAAGAA-ACT-TAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107016 : TCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTGT--GTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAAAGAA-ACT-TAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107010 : TTTTTTTACATCA--GATATAG-ATGA-A-TGC-AATGA-CACACCATCC---TGT-GCTCA-G-TAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAAT----C--A-AAGC----ATA-----TTTAAAGAACACG-Tgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tTCTTTTTACTACGTAGATATAG-ATGATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTGT--GTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTGA-AAAT----CCAA-AAGC----ATA-----TTTAAAGAA-ACT-TAtcattgtagtttgtctgtacgac
gi|107018 : TTTTTCTGCAT---AGATATAG-ATGA-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATGT--TTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAATAAGAC--ATAGAC----ATA------TTAA--AA-ACG-TAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107009 : TTTTTTACATCATAG-T-TAG-ACGA-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTGT--GTA-A-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAAT----C--A-ATGC----ATA-----TTTAAAGAA-ACG-gtaatggttt
gi|107011 : tcTTTCTTACTACATAGATATAG-ATGA-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTGC--CTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACGT----C--A-GAGTCAAAATATTTTTTTTAAAGAA-ACgctacatgttgttttgtctgtaccacatttcaaaagcatagctagagaaaagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107012 : tcTTTCTTACTACATAGATATAG-ATGA-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGCC--ATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACGT----C--A-taagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107019 : tcTCACAGATATAA-ATGA-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTGT--ATAAA-CA-GA-CAGGG--AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAAT----C--A-gagtcaaatatttttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107009 : A-ACG-GAC--CCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTTGTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAAGATTTT--GTGTC-C--AC-GAAAAG---AAAGACGAATGAT-ACGTATTTTAA-ATTATCT-G-AA-ATAATATTTGACGAAGGCCTCTG-TAATT-TATTT-AATT-TGTAT-AGTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCGG-TG---A--CA----T---AAATTCAGGTT-TGA-------A-CGTATATTG-------------------------GAATA---TTGAAC--G--TT--AGTGGAACCCAGTTG-CA-TCCCAAATT-CCATGTAA
gi|107006 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcCCCAG-A---TGTTCC-TGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAAGATTT---GTGTTTCCAAC-GAAA-G--CAAA---GA-TGAT-ACGTATTTTGAGATTATCT-G-AA-ATATTATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTC-G-TG-T-A--CA----T---AAATTCA-GTT-CGA-------A-CGTATATTGA--------------------------ATAT---TGAAC--GTTTT--AGTGGAACCCAGTTG-CA-T-CCAAT-T-CCATGTAA
gi|107013 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggaCCCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAGAAAAGATTTT--GTGTT-CC-AC-GAAAAA--GAAAGACGAATGAT-ACGTATTTTAA-ATTATCT-GAAATATA-TATTTGACGAAGGCCTCTG-TAATT-TA-T--AATT-TGTAT-AGTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTC-G-TG-TGA--CA----T---AAATTCA-GTT-TG--------A-CGTATATTGA--------------------------ATAT---TGAAC--GTTTT--AGTGGAACCCAGTTG-CA-T-CCAAATT-CCATGTAA
gi|107007 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggaCCCAG-A---TGTTCC-TGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAAGATT----GTGTT-CCAAC-GAAAAGAGCAAA---GAATGAT-ACGTATTTTGA-ATTATCT-GAAA--TATTATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTC-G-TG-T-A--CA----T---AAATTCA-GTT-CGA-------A-CGTATATTGATATTGAACGTTT-----------------TAGTGGAAC-----------------CCAGTTG-CA-T-CCAAT-T-CCATGTAA
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaCCCAGCA---TGTTCCTTGAA--G-T-CTGA------AA-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTGGCTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG-AA-GATTT-----GT--CCAAC-GAAAAGAGCAAA---GCATGAT-ACGTATTTTGAGATTATCTTGGAA-ATATTATTTGATGAAGGCCT-TG-TAATT-TA-TA-A--T-TG--TAAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTC-GCTG-T-A--CA----T---AAATTCA-GTT-CGA-------ACCGTATATTGA--------------------------ATAT---TGAACTAT--TT--AGTGGAACCCAGTTG-CA-TACCAAGTT-CCATGTAA
gi|107015 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagaCCCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT--------------CT-CAAAAGCATAGG-TAGAG-AAAGATTTT--GTGTT-TAAAA-GAAAAA--CAAA---GAATGAC-ACATATTTTAA-ATTATCT-GAAA-ATATTATTTGA--------T-TG-TGGTT-TA-TA-AATT-TG--T-AGTATTGTT-AA-TATATA-TGT-TGTGTACA---AC--TT-GTTC-G-TG-T-A--TG----T---AAATTCA-GTT-CGA-------A-CGTATATTG
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaCCCAG-A---TGTTCCGTGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAAGATTTTT-GTGTT-TAAAA-GAAAAA--CAAA---GAATGAC-ACATATTTTAA-ATTATCT-GAAA-AAATTA-TTGA--------T-TGTTGGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTC-G-TG-T-GATTG----T---AAATTCA--TT-CGA-------A-CGTATATTGcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107010 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggaCCAG-A---TGT-CCGTGAAAGG-T-CTGA------AA-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTTGTCTGTACcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaCAG-A---TGTTCCGTGAAAGGCT-CTGA------AAATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAAGATTTTTTGTGTT-TAAAAAGAAAAA--CAAA---GAATGACCACATATTTTAA-ATTATCT-GAAA-AAATTA-TTGAT------TT-TA-GCGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TA-ATA-TGT-T-TGTAC----AC--TT-GTTC-GATG-T-G---ATTGTT---AAATTCA--TT-CGA-------A-CGTATATTGgac
gi|107012 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggaccaCAG-AGTGTGTTCCGAAAAAGG-TATTGACGTCAGAG-TC---AA-------ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT--TTGCACAAACATTTTCAAAAGCGTGGG-TAGAcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107011 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaAG-G---TGTTCCGAAAAAGG-T-ATGA------CG-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT--TTGCACAAACATTT-CAAAAGCGTGGG-TAGA
gi|107020 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagGAAGAAGGC---TA-TAATT-AG-TA------TG--T-CATGGTG----G-TATATA-TAT-TTTGTATG---AC--TT-CTTCAA-CG-T-A--TA----TTGAAAATTCA--TT-TGA-------A-CTTTTAGTGA
gi|107021 : -TG-TAATG-TA-TA-ATTTGTG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTC-G-TG-TTA--CA----T---AAATTCA-ATTATGA-------A-CGTATACTGCATTATATGAACCGTT--------------TAAGTGAAC------------------CACTTG-CA-T-CCAAATT-CCATGTAAaacccaattgatattcaaattcatgtaa
gi|107024 : -TAATTGTA-TGTCATT-TG--T-----GTG-T-A----TATA-TAT-TTTGTATG---AC--TT-CTTC-A-CG-T-A--TA----TTGAAAATTCA-ATT-TGA-------A-CTTTTAGTGA
gi|107022 : -AATT-TG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTC-G-TG-T-A--CA----T---AAATTCA-ATT-TGA-------A-CGTATATTGaacccaattgtattcaaattccatgtaa
gi|107023 : -AATTGTG--TCGGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTC-G-TGGT-A--CA----T---AAATTCA----------------------ATTGAACGTAGTATTGC----------------ATTATTGAAC--G--TTTTAGTGGAACCCACTTG-CA-T-CCAAATT-CCATGTAAcatattgaacgttttagtggaacccacttgcatccaaattccatgtaa
gi|107024 : -T-AA-T-TGTA-TGT-CAT------------TT-GT---G-TG-T-A--TA----T---ATATTTT-GTA-TGACTTCTTCA-CGTATATTGAAAATTC-------------------AAT----TTGAAC--T--TTT-AGTGAAACCCAATTG-TA-T-TCAAA-TTCCATGTAA
gi|107015 : ATAT---TGAAC--G--TTTTAGTGGAACCCAGTTG-CA-T-CCAAATT-CCATGTAA
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggacccagatgttccgtgaaaggtctgaaatcaaagcatatttaaagaaacttagtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcATTGAAC--G--TTTTAGTGGAACCCAGTTG-CATT-CCAAATT-CCATGTAA
gi|107022 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggacccagatgttccgtgaaaggtctgaaatcaaagcatatttaaagaaacttagttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatATTGAAC--G--TTTTAGTGGAACCCACTTG-CA-T-CCAAATT-CCATGTAA
gi|107017 : aatttgtggtattgttaatacatatgttgtgtacaactttttcgtgtacataaattcaatttgaacgtatattgcatTTGAAC--G--TTT-AGTGGAACC-AGTTG-CATT-CCAAATT-CCATGTAA
gi|107020 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggaccacagatgttccgtgaaaggctctgaaaatccaaaagcatatttaaagaaacttagttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacTTGAAC--T--TTT-AGTGAAACCCAATTGATA-T-TCAAA-T-TCATGTAA
Alignments
lowQualScore : 1111 1111 111 11111 1111111111 22 111 11 111 555555555555555555555555555555555555555 1
lowQualScore : 3 2 2 2 2 2 2 2 0 1 2 2 2 2 2 555 2 2 2 2 555 2 33 2 2 2 5 2 2 444 1 2 99999 33 2 5555 33 2 1111 77777 2 3 77 2 55555 1 2 2 0000 2 2 999 9999 00000 1 2 6666666666 4 3 22 0 4 3 444 4 4 222 4 4 2 4 11 777 777 4 4 8 4 3 0 4 11 1 6 3 44 33 5 77 2 2 555 2 2 5555 444 33 2 5 2 8 33 5555 44 44 8888888 2 2 2 444444444444444444444444444444444444444 5 8 2 2 2 5 5
lowQualScore : . . . . . . . . . . . . . . . ... . . . . ... . .. . . . . . . ... . . ..... .. . .... .. . .... ..... . . .. . ..... . . . .... . . ... .... ..... . . .......... . . .. . . . ... . . ... . . . . .. ... ... . . . . . . . .. . . . .. .. . .. . . ... . . .... ... .. . . . . .. .... .. .. ....... . . . ....................................... . . . . . . .
lowQualScore : 8 7 7 7 7 7 7 5 6 7 7 7 7 7 2 333 7 7 7 7 555 7 77 7 7 7 3 7 7 777 5 7 33333 77 7 7777 77 9 1111 11111 3 1 99 5 88888 8 4 4 0000 4 4 777 1111 99999 8 4 8888888888 2 1 77 4 5 3 222 0 0 777 0 0 5 0 00 000 000 0 0 0 0 8 8 0 99 4 7 3 66 88 7 99 9 9 111 7 7 1111 777 77 7 3 7 0 77 7777 22 11 7777777 7 7 7 000000000000000000000000000000000000000 3 7 7 7 7 3 3
consensus : TTTTTTTACATCATAGATATAG-ATG-A-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-CGA-------AC-GTA-TATT-GA--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAA
Reference ( family-856 ) : TTTTTTTACATCATAGATATAG-ATG-A-A-TGC-AA-GACCATAACGTCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-CGA-------AC-GTA-TATT-GA--------------------------A----T--AT--TTGAAC-G-TTT-A-GTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATG-A-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TATATG-TAG-T---TG-TCTGTA--------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107005 : tACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ATA-TGTAG-TTGT-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATTTT--GTGTTT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTTATGA-ATTATCT-GGAAATAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-CGA-------AC-GTA-TATT-GA--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAgattttgtgtttccaacgaaaagcaaagaatgatacgtatttatgaattatctggaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgcgtggcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107006 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAG-ATG-A-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--TATATG-TAG-----TTTGCTGTA--------CCG----AC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107006 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTT---GTG-TTTCCAAC-GAAA-G--CAAA---GA----TGAT-ACGTATTT-TGAGATTATCT-GAAA-TAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-CGA-------AC-GTA-TATT-GA--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CC-AATTCCATGTAAgatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTAC-TCATAGATATAG-ATG-A-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107007 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATT----GTG-TT-CCAAC-GAAAAGAGCAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAA-TAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-CGA-------AC-GTA-TATT-G---------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CC-AATTCCATGTAAcatatgtagtttgctgtaccgacatttcaaaagcatactagagaaagattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAGGATG-A-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT---TGTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107008 : tACC-CAGCA---TGTTCCTTGAA--G-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTGGCTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG-AA--GATTT-----G-T--CCAAC-GAAAAGAGCAAA---GC---ATGAT-ACGTATTT-TGAGATTATCTTGGAAATAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAA--T-TG--T-AAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTCGCTG-T-A--CAT----AAATTCA-GTT-CGA-------ACCGTA-TATT-GA--------------------------A----T--A---TTGAACTA-TTT-A-GTGGAACCCAGTTG-CA-TACCAAGTTCCATGTAAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107009 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagTTTTTTACATCATAG-T-TAG-ACG-A-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTG--TGT-AA-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGGCTACAT----G-T---TGTTTT-------G-T-CTGTACCAC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107009 : tcACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTTGTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAA-GATTTT--GTG-TC-C--AC-GAAAAG---AAAGACGA---ATGAT-ACGTATTT-TAA-ATTATCT-G-AAATAA-TATTTGACGAAGGCCTCTG-TAA--TTTATTTAATT-TGTAT-A-GTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCG--G-TGA--CAT----AAATTCAGGTT-TGA-------AC-GTA-TATTGGA--------------------------A----T--A---TTGAAC-G--TT-A-GTGGAACCCAGTTG-CA-TCCCAAATTCCATGTAAagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107010 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcaacggTTTTTTTACATCA--GATATAG-ATG-A-A-TGC-AATGA-CACACCATCC---TGT-GCTCA--GTAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAACACG--TTCA
gi|107010 : tC-CAG-A---TGT-CCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTTGTCTGTA-CGACttgtagtttgtctgtacgac
gi|107011 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaTTTCTTACTACATAGATATAG-ATG-A-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTG--CCTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACG-T----C--AGAG-TCAAAATATTTTTTTTAAAGAA-AC
gi|107011 : tcAG-G---TGTTCCGAAAAAGG-T-ATG----AC-G-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT--TTGCACAAACATTT-CAAAAGCGTGGG-TAGAtaagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107012 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagTTTCTTACTACATAGATATAG-ATG-A-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGC--CATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACG-T----C--AGAG-TCAA-ATA-----TTT
gi|107012 : tc-CAG-AGTGTGTTCCGAAAAAGG-TATTG----AC-G-TC---AGAGTCAA-ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT--TTGCACAAACATTTTCAAAAGCGTGGG-TAGAttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107013 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaTTTTTTTACATCATAGATATAG-ACGAA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGC-TACAT----G-T---TGTTT--------G-T-CTGTACCAACA-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107013 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAAGATTTT--GTG-TT-CCA-C-GAAAAA--GAAA---GACGAATGAT-ACGTATTT-TAA-ATTATCT-G-AAATATATATTTGACGAAGGCCTCTG-TAA--TTTA-T-AATT-TGTAT-A-GTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTCG-TG-TGA--CAT----AAATTCA-GTT-TG--------AC-GTA-TATT-GA--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107014 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggTTTTTTTACATCATAGATATAG-ACG-A-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----CTTAAAGAA-ACG--TACNCC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAA--TTTA-TAAATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTCG-TG-T-A--CAT----AAATTCA-GTT-TGA-------AC-GTA-TATT-GANNNNNNNNNNNNNNNNNNNNNNNNNAA----T--ATAATTGAAC-G--TT-A-GTGGAACCCAGTTG-CA-T-CCAAA-TCCATGTAA
gi|107015 : TCTTTTTACTACGTAGATATAG-ATG-A-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107015 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT--------------CT-CAAAAGCATAGG-TAGAG-AAA-GATTTT--GTG-TT-TAAAA-GAAAAA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATCT-GAAAATAT-TATTTGAT---------TG-TGG--TTTA-TAAATT-TG--T-A-GTATTG-TTAA-TATATA-TGT-TGTGTACA---AC--TT-GTTCG-TG-T-A--TGT----AAATTCA-GTT-CGA-------AC-GTA-TATT-GC--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATG-A-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107016 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAA-GATTTTT-GTG-TT-TAAAA-GAAAAA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATCT-GAAAAAAT-TA-TTGA--------T-TGTTGG--TTT--TAAATT-TG--T-A-GTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTCG-TG-T-GATTGT----AAATTCA--TT-CGA-------AC-GTA-TATT-GC--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATG-ATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTG--TGTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTG--AAAAT----CCAAAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107017 : ACCACAG-A---TGTTCCGTGAAAGGCT-CTG----AA-AATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAA-GATTTTTTGTG-TT-TAAAAAGAAAAA--CAAA---GA---ATGACCACATATTT-TAA-ATTATCT-GAAAAAAT-TATT-GAT-------T-T--TAGCGTTT--TAAATT-TG--T-A-GTAGTG-TTAA-TA-ATA-TGT-T-TGTACA----C--TT-GTTCGATG-T-G---ATTGTTAAATTCA--TT-CGA-------AC-GTA-TATT-GC--------------------------A-------AC--TTGAAC-G-TTT-A-GTGGAA-CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107018 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggTTTTTCTGCAT---AGATATAG-ATG-A-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATG--TTTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAA-TAAGAC--ATAGAC----ATA-----TT---AAAA-ACG--TA
gi|107019 : TCACAGATATAA-ATG-A-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTG--TATAAA-CA-GA-C-AGGG-AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAA-T----C--Agtaatggttt
gi|107020 : GAAGAAGGC---TA-TAA--TTAG-TA-----TG--T-C-ATGGTG-G-TA-TATATA-TTT-TGTATG-----AC--TT-CTTC-------------------------------A-------AC-GTA-TATT-GA--------------------------AAATTC--AT--TTGAAC-T-TTT-A-GTGAAACCCAATTGATA-T-TCAAATT-CATGTAA
gi|107021 : -TG-TAA--TGTA-TAATTTGTG--T-G-GTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTCG-TG-TTA--CAT----AAATTCA-ATTATGA-------AC-GTA-TACT-GC--------------------------A----TT-AT--ATGAACCG-TTT-AAGTGAA--CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107022 : AATT-TG--T-G-GTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TG-T-A--CAT----AAATTCA-ATT-TGA-------AC-GTA-TATT-GC--------------------------A----T--A---TTGAAC-GTTTT-A-GTGGAACCCACTTG-CA-T-CCAAATTCCATGTAA
gi|107023 : AATTGTG--TCG-GTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TGGT-A--CAT----AAATTCA-ATT--GA-------AC-GTAGTATT-GC--------------------------A----T--TA--TTGAAC-G-TTTTA-GTGGAACCCACTTG-CA-T-CCAAATTCCATGTAA
gi|107024 : -T-AA-T-TGTA-TGT-CAT------------TT-GT--G-TG-T-A--TAT----ATATTTT-GTA-TGACTTCTTCAC-GTA-TATT-GA--------------------------AAAT-TCAAT--TTGAAC-T-TTT-A-GTGAAACCCAATTG-TA-T-TCAAATTCCATGTAA
Alignments
lowQualScore : 1111 1111 111 11111 1111111111 22 111 11 111 333333333333333333333333333
lowQualScore : 3 2 2 5 2 2 2 0 2 2 2 2 2 555 2 2 2 2 555 2 33 2 2 2 5 2 2 444 1 2 99999 33 2 5555 33 2 1111 77777 2 3 77 2 55555 1 2 2 0000 2 2 999 9999 00000 1 2 6666666666 4 3 22 0 4 3 444 4 4 222 4 4 2 4 11 777 777 4 4 8 4 3 0 4 0 11 0 6 3 3 3 2 5 77 444 555 2 2 5555 444 33 2 5 2 8 33 5555 444 55 44 2 2 2 333333333333333333333333333 5 777 66666 2 2 2 5 5
lowQualScore : . . . . . . . . . . . . . ... . . . . ... . .. . . . . . . ... . . ..... .. . .... .. . .... ..... . . .. . ..... . . . .... . . ... .... ..... . . .......... . . .. . . . ... . . ... . . . . .. ... ... . . . . . . . . .. . . . . . . . .. ... ... . . .... ... .. . . . . .. .... ... .. .. . . . ........................... . ... ..... . . . . .
lowQualScore : 8 7 7 3 7 7 5 6 7 7 7 7 2 333 7 7 7 7 555 7 77 7 7 7 3 7 7 777 5 7 33333 77 7 7777 77 9 1111 11111 3 1 99 5 88888 8 4 4 0000 4 4 777 1111 99999 8 4 8888888888 2 1 77 4 5 3 222 0 0 777 0 0 5 0 00 000 000 0 0 0 0 8 8 0 8 99 5 7 1 1 1 7 3 33 222 111 7 7 1111 777 77 7 3 7 0 77 7777 777 33 11 7 7 7 111111111111111111111111111 3 333 77777 7 5 7 3 3
consensus : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAAC-GTA-TATT-GN--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAA
Reference ( family-856 ) : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAAC-GTA-TATT-GA--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TATATG-TAG-T---TG-TCTGTA--------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107005 : tACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ATA-TGTAG-TTGT-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATTTT--GTGTTT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTTATGA-ATTATCT-GGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAAC-GTA-TATT-GA--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAgattttgtgtttccaacgaaaagcaaagaatgatacgtatttatgaattatctggaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgcgtggcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107006 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--TATATG-TAG-----TTTGCTGTA--------CCG----AC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107006 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTT---GTG-TTTCCAAC-GAAA-G--CAAA---GA----TGAT-ACGTATTT-TGAGATTATCT-GAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAAC-GTA-TATT-GA--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CC-AATTCCATGTAAgatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTAC-TCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107007 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTG-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATT----GTG-TT-CCAAC-GAAAAGAGCAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAAC-GTA-TATT-G---------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CC-AATTCCATGTAAcatatgtagtttgctgtaccgacatttcaaaagcatactagagaaagattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAGGATGA-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT---TGTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107008 : tACC-CAGCA---TGTTCCTTGAA--G-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTTGGCTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG-AA--GATTT-----G-T--CCAAC-GAAAAGAGCAAA---GC---ATGAT-ACGTATTT-TGAGATTATCTTGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-A--T-TG--T-AAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTCGCTG-T-A--CA----T---AAATTCA-GTT-CGAACCGTA-TATT-GA--------------------------AT-AT---T-----GAAC-TATTTAGTGGAACCCAGTTG-CA-TACCAAGTTCCATGTAAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107009 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagTTTTTTACATCATAG-T-TAG-ACGA-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTG--TGT-AA-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGGCTACAT----G-T---TGTTTT-------G-T-CTGTACCAC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107009 : tcACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTTGTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAA-GATTTT--GTG-TC-C--AC-GAAAAG---AAAGACGA---ATGAT-ACGTATTT-TAA-ATTATCT-G-AAATAA-TATTTGACGAAGGCCTCTG-TAATT-TATTT-AATT-TGTAT-A-GTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCG--G-TGA--CA----T---AAATTCAGGTT-TGAAC-GTA-TATTGGA--------------------------AT-AT---T-----GAAC-G--TTAGTGGAACCCAGTTG-CA-TCCCAAATTCCATGTAAagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107010 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcaacggTTTTTTTACATCA--GATATAG-ATGA-A-TGC-AATGA-CACACCATCC---TGT-GCTCA--GTAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAACACG--TTCA
gi|107010 : tC-CAG-A---TGT-CCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTTGTCTGTA-CGACttgtagtttgtctgtacgac
gi|107011 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaTTTCTTACTACATAGATATAG-ATGA-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTG--CCTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACG-T----C--AGAG-TCAAAATATTTTTTTTAAAGAA-AC
gi|107011 : tcAG-G---TGTTCCGAAAAAGG-T-ATG----AC-G-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT--TTGCACAAACATTT-CAAAAGCGTGGG-TAGAtaagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107012 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagTTTCTTACTACATAGATATAG-ATGA-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGC--CATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACG-T----C--AGAG-TCAA-ATA-----TTT
gi|107012 : tc-CAG-AGTGTGTTCCGAAAAAGG-TATTG----AC-G-TC---AGAGTCAA-ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT--TTGCACAAACATTTTCAAAAGCGTGGG-TAGAttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107013 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaTTTTTTTACATCATAGATATAG-ACGA-AATGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGC-TACAT----G-T---TGTTT--------G-T-CTGTACCAACA-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107013 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAAGATTTT--GTG-TT-CCA-C-GAAAAA--GAAA---GACGAATGAT-ACGTATTT-TAA-ATTATCT-G-AAATATATATTTGACGAAGGCCTCTG-TAATT-TA-T--AATT-TGTAT-A-GTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTCG-TG-TGA--CA----T---AAATTCA-GTT-TG-AC-GTA-TATT-GA--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107014 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggTTTTTTTACATCATAGATATAG-ACGA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----CTTAAAGAA-ACG--TACNCC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTTGTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAAAG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATCT-GAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-A-GTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-TGAAC-GTA-TATT-GANNNNNNNNNNNNNNNNNNNNNNNNNAAT-ATAATT-----GAAC-G--TTAGTGGAACCCAGTTG-CA-T-CCAAA-TCCATGTAA
gi|107015 : TCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107015 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT--------------CT-CAAAAGCATAGG-TAGAG-AAA-GATTTT--GTG-TT-TAAAA-GAAAAA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATCT-GAAAATAT-TATTTGAT---------TG-TGGTT-TA-TA-AATT-TG--T-A-GTATTG-TTAA-TATATA-TGT-TGTGTACA---AC--TT-GTTCG-TG-T-A--TG----T---AAATTCA-GTT-CGAAC-GTA-TATT-GC--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CA-T-CCAAATTCCATGTAAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107016 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAA-GATTTTT-GTG-TT-TAAAA-GAAAAA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATCT-GAAAAAAT-TA-TTGA--------T-TGTTGGTT-T--TA-AATT-TG--T-A-GTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTCG-TG-T-GATTG----T---AAATTCA--TT-CGAAC-GTA-TATT-GC--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTG--TGTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTG--AAAAT----CCAAAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107017 : ACCACAG-A---TGTTCCGTGAAAGGCT-CTG----AA-AATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAA-GATTTTTTGTG-TT-TAAAAAGAAAAA--CAAA---GA---ATGACCACATATTT-TAA-ATTATCT-GAAAAAAT-TA-TTGAT------TT-TA-GCGTT-T--TA-AATT-TG--T-A-GTAGTGTT-AA-TA-ATA-TGT-T-TGTAC----AC--TT-GTTCGATG-T-G---ATTGTT---AAATTCA--TT-CGAAC-GTA-TATT-GC--------------------------AA-CT---T-----GAAC-G-TTTAGTGGAA-CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107018 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggTTTTTCTGCAT---AGATATAG-ATGA-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATG--TTTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAA-TAAGAC--ATAGAC----ATA-----TT---AAAA-ACG--TA
gi|107019 : TCACAGATATAA-ATGA-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTG--TATAAA-CA-GA-C-AGGG-AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAA-T----C--Agtaatggttt
gi|107020 : GAAGAAGGC---TA-TAATT-AG-TA------TG--T-C-ATGGTG-G-TA-TATATA-TTT-TGTATG-----AC--TT-CTTC----------------------------------AAC-GTA-TATT-GA--------------------------AA-AT---TCATTTGAAC--TTTTAGTGAAACCCAATTGATA-T-TCAAATT-CATGTAA
gi|107021 : -TG-TAATG-TA-TA-ATTTGTG--T-G-GTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTCG-TG-TTA--CA----T---AAATTCA-ATTATGAAC-GTA-TACT-GC--------------------------ATTATA--T-----GAACCGTTTAAGTGAA--CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107022 : -AATT-TG--T-G-GTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TG-T-A--CA----T---AAATTCA-ATT-TGAAC-GTA-TATT-GC--------------------------AT-AT---T-----GAAC-GTTTTAGTGGAACCCACTTG-CA-T-CCAAATTCCATGTAA
gi|107023 : -AATTGTG--TCG-GTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TGGT-A--CA----T---AAATTCA-ATT--GAAC-GTAGTATT-GC--------------------------ATTAT---T-----GAAC-GTTTTAGTGGAACCCACTTG-CA-T-CCAAATTCCATGTAA
gi|107024 : -TAATTGTA-TGTCATT-TG--T------GTG-T-A--TATATA-TTT-TGTATG-----AC--TT-CTTCA-CG-T-A--TA----TTGAAAATTCA-ATT-TGAAC----------------------------------------------------------TTTTAGTGAAACCCAATTG-TA-T-TCAAATTCCATGTAA
Alignments
lowQualScore : 1111 1111 111 11111 1111111111 222 111 1111111111111111 11111111111
lowQualScore : 3 2 2 5 2 2 2 0 2 2 2 2 2 555 2 2 2 2 555 2 33 2 2 2 5 2 2 444 1 2 99999 33 2 5555 33 2 1111 77777 2 3 77 2 55555 1 2 2 0000 2 2 999 9999 00000 0 2 6666666666 4 3 222 0 4 3 444 4 4 99 4 4 2 4 55 55 777 777 4 4 8 4 3 0 4 0 11 0 6 3 3 3 2 5 77 5 555 2 2 5555 444 33 2 5 2 8 33 5555 444 55 44 2 2 2 4 5 2 66666 2 7777777777777777 22222222222 2 5 5
lowQualScore : . . . . . . . . . . . . . ... . . . . ... . .. . . . . . . ... . . ..... .. . .... .. . .... ..... . . .. . ..... . . . .... . . ... .... ..... . . .......... . . ... . . . ... . . .. . . . . .. .. ... ... . . . . . . . . .. . . . . . . . .. . ... . . .... ... .. . . . . .. .... ... .. .. . . . . . . ..... . ................ ........... . . .
lowQualScore : 8 7 7 3 7 7 5 6 7 7 7 7 2 333 7 7 7 7 555 7 77 7 7 7 3 7 7 777 5 7 33333 77 7 7777 77 9 1111 11111 3 1 99 5 88888 8 4 4 0000 4 4 777 1111 99999 3 4 8888888888 2 1 777 4 5 3 222 0 0 55 0 0 5 0 55 55 000 000 0 0 0 0 8 8 0 8 99 5 7 1 1 1 7 3 33 3 111 7 7 1111 777 77 7 3 7 0 77 7777 777 33 11 7 7 7 5 3 7 77777 7 7777777777777777 77777777777 7 3 3
consensus : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
Reference ( family-856 ) : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TATATG-TAG-T---TG-TCTGTA--------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107005 : tACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ATA-TGTAG-TTG-T-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATTTT--GTGTTT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTTATGA-ATTATC-TGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgattttgtgtttccaacgaaaagcaaagaatgatacgtatttatgaattatctggaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgcgtggcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107006 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--TATATG-TAG-----TTTGCTGTA--------CCG----AC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107006 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTT---GTG-TTTCCAAC-GAAA---G--CAAA---GA----TGAT-ACGTATTT-TGAGATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAgatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTAC-TCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107007 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATT----GTG-TT-CCAAC-GAAA--AGAGCAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-G-AT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAcatatgtagtttgctgtaccgacatttcaaaagcatactagagaaagattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAGGATGA-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT---TGTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107008 : tACC-CAGCA---TGTTCCTTGAA--G-T-CTG----AA-A-TC---AAAGC----ATATTT-----AA--AA-ACG--TCATA-TGTAG-TTTGG-CTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG--AA-GA-TTT--G----T-CCAAC-GAAAAGAG--CAAA---GC---ATGAT-ACGTATTT-TGAGATTATCTTGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-A--T-TG--TAAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTCGCTG-T-A--CA----T---AAATTCA-GTT-CGAACCGTA-TATT-GAAT-AT-T-----GAAC-TATT----------------TAGTGGAAC-----------CCAGTTG-CA-TACCAAGTTCCATGTAAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107009 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagTTTTTTACATCATAG-T-TAG-ACGA-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTG--TGT-AA-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGGCTACAT----G-T---TGTTTT-------G-T-CTGTACCAC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107009 : tcACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTT-GTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAA-GATTTT--GTG-TC-C--AC-GAAA--AG---AAAGACGA---ATGAT-ACGTATTT-TAA-ATTATC-TG-AAATAA-TATTTGACGAAGGCCTCTG-TAATT-TATTT-AATT-TGTAT-AGTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCG--G-TGA--CA----T---AAATTCAGGTT-TGAA-CGTA-TATTGGAAT-AT-T-----GAAC-G--T----------------TAGTGGAAC-----------CCAGTTG-CA-TCCCAAATTCCATGTAAagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107010 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcaacggTTTTTTTACATCA--GATATAG-ATGA-A-TGC-AATGA-CACACCATCC---TGT-GCTCA--GTAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAACACG--TTCA
gi|107010 : tC-CAG-A---TGT-CCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTT-GTCTGTA-CGACttgtagtttgtctgtacgac
gi|107011 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaTTTCTTACTACATAGATATAG-ATGA-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTG--CCTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACG-T----C--AGAG-TCAAAATATTTTTTTTAAAGAA-AC
gi|107011 : tcAG-G---TGTTCCGAAAAAGG-T-ATG----AC-G-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT---TTGCACAAACATTT-CAAAAGCGTGGG-TAGAtaagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107012 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagTTTCTTACTACATAGATATAG-ATGA-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGC--CATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACG-T----C--AGAG-TCAA-ATA-----TTT
gi|107012 : tc-CAG-AGTGTGTTCCGAAAAAGG-TATTG----AC-G-TC---AGAGTCAA-ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT---TTGCACAAACATTTTCAAAAGCGTGGG-TAGAttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107013 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaTTTTTTTACATCATAGATATAG-ACGA-AATGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGC-TACAT----G-T---TGTTT--------G-T-CTGTACCAACA-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107013 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAAGATTTT--GTG-TT-CCA-C-GAAA--AA--GAAA---GACGAATGAT-ACGTATTT-TAA-ATTATC-TG-AAATATATATTTGACGAAGGCCTCTG-TAATT-TA-T--AATT-TGTAT-AGTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTCG-TG-TGA--CA----T---AAATTCA-GTT-TG-A-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107014 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggTTTTTTTACATCATAGATATAG-ACGA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----CTTAAAGAA-ACG--TACNCC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-TGAA-CGTA-TATT-GANN-NN-N-----NNNN-NNNNNNNNNNNNNNNNAATATAATTGAACGTTAGTGGAACCCAGTTG-CA-T-CCAAA-TCCATGTAA
gi|107015 : TCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107015 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT---------------CT-CAAAAGCATAGG-TAGAG-AAA-GATTTT--GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAATAT-TATTTGAT---------TG-TGGTT-TA-TA-AATT-TG--T-AGTATTG-TTAA-TATATA-TGT-TGTGTACA---AC--TT-GTTCG-TG-T-A--TG----T---AAATTCA-GTT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107016 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAA-GATTTTT-GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGA--------T-TGTTGGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTCG-TG-T-GATTG----T---AAATTCA--TT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTG--TGTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTG--AAAAT----CCAAAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107017 : ACCACAG-A---TGTTCCGTGAAAGGCT-CTG----AA-AATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAA-GATTTTTTGTG-TT-TAAAAAGAAA--AA--CAAA---GA---ATGACCACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGAT------TT-TA-GCGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TA-ATA-TGT-T-TGTAC----AC--TT-GTTCGATG-T-G---ATTGTT---AAATTCA--TT-CGAA-CGTA-TATT-GCAA-CT-T-----GAAC-G-TT----------------TAGTGGAA------------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107018 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggTTTTTCTGCAT---AGATATAG-ATGA-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATG--TTTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAA-TAAGAC--ATAGAC----ATA-----TT---AAAA-ACG--TA
gi|107019 : TCACAGATATAA-ATGA-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTG--TATAAA-CA-GA-C-AGGG-AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAA-T----C--Agtaatggttt
gi|107020 : GAAGAAGGC---TA-TAATT-AG-TA------TG--T-CATGGTG-G-TA-TATATA-TTT-TGTATG-----AC--TT-CTTC----------------------------------AA-CGTA-TATT-GAAA-AT-TCATTTGAAC--TTT----------------TAGTGAAAC-----------CCAATTGATA-T-TCAAATT-CATGTAA
gi|107021 : -TG-TAATG-TA-TA-ATTTGTG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTCG-TG-TTA--CA----T---AAATTCA-ATTATGAA-CGTA-TACT-GCATTATAT-----GAACCGTTT----------------AAGTGAA-------------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107022 : -AATT-TG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TG-T-A--CA----T---AAATTCA-ATT-TGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107023 : -AATTGTG--TCGGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TGGT-A--CA----T---AAATTCA-ATT--GAA-CGTAGTATT-GCATTAT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107024 : -TAATTGTA-TGTCATT-TG--T-----GTG-T-A--TATATA-TTT-TGTATG-----AC--TT-CTTCA-CG-T-A--TA----TTGAAAATTCA-ATT-TGAA-C-----------------------------TTT----------------TAGTGAAAC-----------CCAATTG-TA-T-TCAAATTCCATGTAA
Alignments
lowQualScore : 1111 1111 111 11111 1111111111 222 111 1111111111111111 11111111111
lowQualScore : 3 2 2 5 2 2 2 0 2 2 2 2 2 555 2 2 2 2 555 2 33 2 2 2 5 2 2 444 1 2 99999 33 2 5555 33 2 1111 77777 2 3 77 2 55555 1 2 2 0000 2 2 999 9999 00000 0 2 6666666666 4 3 222 0 4 3 444 4 4 99 4 4 2 4 55 55 777 777 4 4 8 4 3 0 4 0 11 0 6 3 3 3 2 5 77 5 555 2 2 5555 444 33 2 5 2 8 33 5555 444 55 44 2 2 2 4 5 2 66666 2 7777777777777777 22222222222 2 5 5
lowQualScore : . . . . . . . . . . . . . ... . . . . ... . .. . . . . . . ... . . ..... .. . .... .. . .... ..... . . .. . ..... . . . .... . . ... .... ..... . . .......... . . ... . . . ... . . .. . . . . .. .. ... ... . . . . . . . . .. . . . . . . . .. . ... . . .... ... .. . . . . .. .... ... .. .. . . . . . . ..... . ................ ........... . . .
lowQualScore : 8 7 7 3 7 7 5 6 7 7 7 7 2 333 7 7 7 7 555 7 77 7 7 7 3 7 7 777 5 7 33333 77 7 7777 77 9 1111 11111 3 1 99 5 88888 8 4 4 0000 4 4 777 1111 99999 3 4 8888888888 2 1 777 4 5 3 222 0 0 55 0 0 5 0 55 55 000 000 0 0 0 0 8 8 0 8 99 5 7 1 1 1 7 3 33 3 111 7 7 1111 777 77 7 3 7 0 77 7777 777 33 11 7 7 7 5 3 7 77777 7 7777777777777777 77777777777 7 3 3
consensus : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
Reference ( family-856 ) : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TATATG-TAG-T---TG-TCTGTA--------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107005 : tACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ATA-TGTAG-TTG-T-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATTTT--GTGTTT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTTATGA-ATTATC-TGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgattttgtgtttccaacgaaaagcaaagaatgatacgtatttatgaattatctggaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgcgtggcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107006 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--TATATG-TAG-----TTTGCTGTA--------CCG----AC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107006 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTT---GTG-TTTCCAAC-GAAA---G--CAAA---GA----TGAT-ACGTATTT-TGAGATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAgatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTAC-TCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107007 : tACC-CAG-A---TGTTCC-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATT----GTG-TT-CCAAC-GAAA--AGAGCAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-G-AT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAcatatgtagtttgctgtaccgacatttcaaaagcatactagagaaagattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAGGATGA-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT---TGTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107008 : tACC-CAGCA---TGTTCCTTGAA--G-T-CTG----AA-A-TC---AAAGC----ATATTT-----AA--AA-ACG--TCATA-TGTAG-TTTGG-CTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG--AA-GA-TTT--G----T-CCAAC-GAAAAGAG--CAAA---GC---ATGAT-ACGTATTT-TGAGATTATCTTGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-A--T-TG--TAAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTCGCTG-T-A--CA----T---AAATTCA-GTT-CGAACCGTA-TATT-GAAT-AT-T-----GAAC-TATT----------------TAGTGGAAC-----------CCAGTTG-CA-TACCAAGTTCCATGTAAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107009 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagTTTTTTACATCATAG-T-TAG-ACGA-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTG--TGT-AA-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGGCTACAT----G-T---TGTTTT-------G-T-CTGTACCAC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107009 : tcACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTT-GTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAA-GATTTT--GTG-TC-C--AC-GAAA--AG---AAAGACGA---ATGAT-ACGTATTT-TAA-ATTATC-TG-AAATAA-TATTTGACGAAGGCCTCTG-TAATT-TATTT-AATT-TGTAT-AGTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCG--G-TGA--CA----T---AAATTCAGGTT-TGAA-CGTA-TATTGGAAT-AT-T-----GAAC-G--T----------------TAGTGGAAC-----------CCAGTTG-CA-TCCCAAATTCCATGTAAagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107010 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcaacggTTTTTTTACATCA--GATATAG-ATGA-A-TGC-AATGA-CACACCATCC---TGT-GCTCA--GTAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAACACG--TTCA
gi|107010 : tC-CAG-A---TGT-CCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTT-GTCTGTA-CGACttgtagtttgtctgtacgac
gi|107011 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaTTTCTTACTACATAGATATAG-ATGA-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTG--CCTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACG-T----C--AGAG-TCAAAATATTTTTTTTAAAGAA-AC
gi|107011 : tcAG-G---TGTTCCGAAAAAGG-T-ATG----AC-G-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT---TTGCACAAACATTT-CAAAAGCGTGGG-TAGAtaagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107012 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagTTTCTTACTACATAGATATAG-ATGA-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGC--CATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACG-T----C--AGAG-TCAA-ATA-----TTT
gi|107012 : tc-CAG-AGTGTGTTCCGAAAAAGG-TATTG----AC-G-TC---AGAGTCAA-ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT---TTGCACAAACATTTTCAAAAGCGTGGG-TAGAttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107013 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaTTTTTTTACATCATAGATATAG-ACGA-AATGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGC-TACAT----G-T---TGTTT--------G-T-CTGTACCAACA-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107013 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAAGATTTT--GTG-TT-CCA-C-GAAA--AA--GAAA---GACGAATGAT-ACGTATTT-TAA-ATTATC-TG-AAATATATATTTGACGAAGGCCTCTG-TAATT-TA-T--AATT-TGTAT-AGTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTCG-TG-TGA--CA----T---AAATTCA-GTT-TG-A-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107014 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggTTTTTTTACATCATAGATATAG-ACGA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----CTTAAAGAA-ACG--TACNCC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-TGAA-CGTA-TATT-GANN-NN-N-----NNNN-NNNNNNNNNNNNNNNNAATATAATTGAACGTTAGTGGAACCCAGTTG-CA-T-CCAAA-TCCATGTAA
gi|107015 : TCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107015 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT---------------CT-CAAAAGCATAGG-TAGAG-AAA-GATTTT--GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAATAT-TATTTGAT---------TG-TGGTT-TA-TA-AATT-TG--T-AGTATTG-TTAA-TATATA-TGT-TGTGTACA---AC--TT-GTTCG-TG-T-A--TG----T---AAATTCA-GTT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107016 : ACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAA-GATTTTT-GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGA--------T-TGTTGGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTCG-TG-T-GATTG----T---AAATTCA--TT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTG--TGTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTG--AAAAT----CCAAAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107017 : ACCACAG-A---TGTTCCGTGAAAGGCT-CTG----AA-AATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAA-GATTTTTTGTG-TT-TAAAAAGAAA--AA--CAAA---GA---ATGACCACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGAT------TT-TA-GCGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TA-ATA-TGT-T-TGTAC----AC--TT-GTTCGATG-T-G---ATTGTT---AAATTCA--TT-CGAA-CGTA-TATT-GCAA-CT-T-----GAAC-G-TT----------------TAGTGGAA------------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107018 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggTTTTTCTGCAT---AGATATAG-ATGA-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATG--TTTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAA-TAAGAC--ATAGAC----ATA-----TT---AAAA-ACG--TA
gi|107019 : TCACAGATATAA-ATGA-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTG--TATAAA-CA-GA-C-AGGG-AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAA-T----C--Agtaatggttt
gi|107020 : GAAGAAGGC---TA-TAATT-AG-TA------TG--T-CATGGTG-G-TA-TATATA-TTT-TGTATG-----AC--TT-CTTC----------------------------------AA-CGTA-TATT-GAAA-AT-TCATTTGAAC--TTT----------------TAGTGAAAC-----------CCAATTGATA-T-TCAAATT-CATGTAA
gi|107021 : -TG-TAATG-TA-TA-ATTTGTG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTCG-TG-TTA--CA----T---AAATTCA-ATTATGAA-CGTA-TACT-GCATTATAT-----GAACCGTTT----------------AAGTGAA-------------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107022 : -AATT-TG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TG-T-A--CA----T---AAATTCA-ATT-TGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107023 : -AATTGTG--TCGGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TGGT-A--CA----T---AAATTCA-ATT--GAA-CGTAGTATT-GCATTAT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107024 : -TAATTGTA-TGTCATT-TG--T-----GTG-T-A--TATATA-TTT-TGTATG-----AC--TT-CTTCA-CG-T-A--TA----TTGAAAATTCA-ATT-TGAA-C-----------------------------TTT----------------TAGTGAAAC-----------CCAATTG-TA-T-TCAAATTCCATGTAA
blockSeqs : A G T A A T T A G T A T GTC A A G G GA C GT A C C C A C GTG T C ACATA TA A AAGA CA A CAAA TTTTT A C GC A AGTG G C A TACC C A TCA CAAA TTTTT C GGCTACAT A T GG G T GCG A A TT . T C A AG AG GAC CGA C . G T A A TG C T G T T G TA A TT G C CCAT CAA CA A C G G AT TTGT TGA GG AT C G G A T A CATTT C NNNNNNNNNNNNAATA GTTAGTGGAAC A T A
blockSeqs : A . . A . . T . . . . T G . . . . AG . . . . . A . . . G . A . . . . . CAA . A . C . CA G . . TACC . . TCA CAA TTTT . GTCATAT A . GT G . GC . . T . . C . . . . . . . G . A . TG C . . . . G TA C TT . . CAT . . . A . G . . . G C . . . A T . . . . . . T C
blockSeqs : A . . . . . T . . . . T G . . . . A . . . . . . . . . G . . . . . . . . . A . . . A T . . . . . TCA . . . GTCATAT A . GT G . GC . . . . . C . . . . . . . . . G . TG . . . . . . . . TT . . CAT . . . . . T . . . G C . . . A . . . . . . . . .
blockSeqs : A . . . . . T . . . . T C . . . . A . . . . . . . . . G . . . . . . . . . A . . . A G . . . . . CA . . . GTTCATT T . GT G . GG . . . . . C . . . . . . . . . A . CG . . . . . . . . TT . . TGT . . . . . . . . . G C . . . A . . . . . . . . .
blockSeqs : T . . . . . C . . . . T G . . . . A . . . . . . . . . G . . . . . . . . . A . . . A G . . . . . . . . . GCTACAT A . GT A . GG . . . . . C . . . . . . . . . A . CG . . . . . . . . TT . . TGT . . . . . . . . . G T . . . A . . . . . . . . .
blockSeqs : T . . . . . C . . . . G G . . . . C . . . . . . . . . G . . . . . . . . . A . . . T G . . . . . . . . . GTATAT T . G A . GC . . . . . A . . . . . . . . . A . TG . . . . . . . . TT . . TGT . . . . . . . . . G T . . . C . . . . . . . . .
blockSeqs : A . . . . . T . . . . T G . . . . C . . . . . . . . . A . . . . . . . . . A . . . A G . . . . . . . . . GTACAT T . G A . GC . . . . . A . . . . . . . . . A . AG . . . . . . . . T . . TGT . . . . . . . . . G T . . . C . . . . . . . . .
blockSeqs : A . . . . . T . . . . T G . . . . A . . . . . . . . . G . . . . . . . . . A . . . A G . . . . . . . . . TAAA T . . A . GG . . . . . A . . . . . . . . . . . T . . . . . . . . T . . TGT . . . . . . . . . A C . . . C . . . . . . . . .
blockSeqs : T . . . . . C . . . . C G . . . . A . . . . . . . . . G . . . . . . . . . A . . . G G . . . . . . . . . TAA T . . . . GG . . . . . . . . . . . . . . . . . T . . . . . . . . T . . TGT . . . . . . . . . A C . . . A . . . . . . . . .
blockSeqs : T . . . . . C . . . . C G . . . . A . . . . . . . . . G . . . . . . . . . . . . . T G . . . . . . . . . TTA . . . . . C . . . . . . . . . T . . CA . . . . . . . . . A C . . . C . . . . . . . . .
blockSeqs : T . . . . . C . . . . C G . . . . A . . . . . . . . . A . . . . . . . . . . . . . A G . . . . . . . . . TTA . . . . . C . . . . . . . . G . . CA . . . . . . . . . A T . . . C . . . . . . . . .
blockSeqs : A . . . . . A . . . . G . . . . . T . . . . . . . . . A . . . . . . . . . . . . A G . . . . . . . . . TTA . . . . . . . . . . . T . . CA . . . . . . . . . . T . . . C . . . . . . . . .
blockSeqs : . . . . . . C . . . . A . . . . . G . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : *** GTACAT**** G** GN*
originalCons : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
finalCons : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGTTCCGTGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACGTACAT----GTNG-TTTG--CTGTACCGACATTT-CAAAAGCATAGN-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
Alignments
lowQualScore : 1111 222 11111 1111111111 222 111 1111111111111111 11111111111
lowQualScore : 3 2 2 5 2 2 2 0 2 2 2 2 2 555 2 2 2 2 555 2 33 2 2 2 5 2 2 444 1 2 99999 33 2 5555 33 2 1111 77777 2 3 77 33 55555 33 33 0 1 2 2 9999 2 2 222 8888 0 00000 2 6666666666 4 3 222 0 4 3 666 4 4 99 4 4 2 4 55 55 777 777 4 4 8 4 3 0 4 0 11 0 6 3 3 3 2 5 77 5 555 2 2 5555 444 33 2 5 2 8 33 5555 444 55 44 2 2 2 4 5 2 66666 2 7777777777777777 22222222222 2 5 5
lowQualScore : . . . . . . . . . . . . . ... . . . . ... . .. . . . . . . ... . . ..... .. . .... .. . .... ..... . . .. .. ..... .. .. . . . . .... . . ... .... . ..... . .......... . . ... . . . ... . . .. . . . . .. .. ... ... . . . . . . . . .. . . . . . . . .. . ... . . .... ... .. . . . . .. .... ... .. .. . . . . . . ..... . ................ ........... . . .
lowQualScore : 8 7 7 3 7 7 5 6 7 7 7 7 2 333 7 7 7 7 555 7 77 7 7 7 3 7 7 777 5 7 33333 77 7 7777 77 9 1111 11111 3 1 99 33 00000 11 33 6 8 2 2 4444 2 2 555 6666 4 33333 2 8888888888 2 1 777 4 5 3 888 0 0 55 0 0 5 0 55 55 000 000 0 0 0 0 8 8 0 8 99 5 7 1 1 1 7 3 33 3 111 7 7 1111 777 77 7 3 7 0 77 7777 777 33 11 7 7 7 5 3 7 77777 7 7777777777777777 77777777777 7 3 3
consensus : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
Reference ( family-856 ) : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GACCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TACACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTNG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGN-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CGTGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GNAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAA
gi|107005 : TTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACG--TATATG-TAG-T---TG---TCTG-TA--------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107005 : tACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACG--T-ATA-TGTAG-TTG-T-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATTTT--GTGTTT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTTATGA-ATTATC-TGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TG--CGTG-GCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgattttgtgtttccaacgaaaagcaaagaatgatacgtatttatgaattatctggaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgcgtggcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107006 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCTCA-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGTGAA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--TATATG-TAG-----TTT--GCTG-TA--------CCG----AC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107006 : tACC-CAG-A---TGT--TCC--TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--T-ATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTT---GTG-TTTCCAAC-GAAA---G--CAAA---GA----TGAT-ACGTATTT-TGAGATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAgatttgtgtttccaacgaaagcaaagatgatacgtattttgagattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgaatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107007 : ttttttttacatcatagatatagatgaatgcaagatcacaccatccgtgtgctcaggtaatggccgcttgtgaatggacttggtgaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTAC-TCATAGATATAG-ATGA-A-TGC-AA-GATCACACCATCC-G-TGT-GCCTC-GGTAATGGCCGCT---TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCC-TGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T------CAT-A---TGTAGTTTGCTGTA------CCG----AC-A-TTTCAAAAGC----ATA-CT-----AGAGAA-A
gi|107007 : tACC-CAG-A---TGT--TCC--TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAA--A-ACG--TCATA-TGTAG-TTT-G-CTGTACCGACATTT-CAAAAGCATA-C-TAGAG-AAA-GATT----GTG-TT-CCAAC-GAAA--AGAGCAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAA-TAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CA-GTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-CGAA-CGTA-TATT-G-AT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CC-AATTCCATGTAAgattgtgttccaacgaaaagagcaaagaatgatacgtattttgaattatctgaaatattatttgatgaaggccttgtaatttataaatttgtagtagtgtaatatatatgtcagtgcaacttgttcgtgtacataaattcagttcgaacgtatattgatattgaacgttttagtggaacccagttgcatccaattccatgtaa
gi|107008 : ttttttttactcatagatatagatgaatgcaagatcacaccatccgtgtgcctcggtaatggccgcttgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTTTTTTTACATCATAGATATAGGATGA-A-TGC-AA-GATCACACCATCCAG-TGT-GCCTC-GGTAATGGCCGCT---TGTGAAATG-GA-CTTGGG-AAGA-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA--GACC-CAGCA---TGTTCCTTGAA--G-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAA--AA-ACG--T
gi|107008 : tACC-CAGCA---TGT--TCCT-TGAA--G-T-CTG----AA-A-TC---AAAGC----ATATTT-----AA--AA-ACG--TCATA-TGTAG-TTTGG-CTGTACCGA-ATTT-CAAAAGCATA-C-TAGAG--AA-GA-TTT--G----T-CCAAC-GAAAAGAG--CAAA---GC---ATGAT-ACGTATTT-TGAGATTATCTTGGAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-A--T-TG--TAAGTAGTG-T-AAGTATATACTGT-CA-GTGCA---AC--TTAGTTCGCTG-T-A--CA----T---AAATTCA-GTT-CGAACCGTA-TATT-GAAT-AT-T-----GAAC-TATT----------------TAGTGGAAC-----------CCAGTTG-CA-TACCAAGTTCCATGTAAcatatgtagtttggctgtaccgaatttcaaaagcatactagagaagatttgtccaacgaaaagagcaaagcatgatacgtattttgagattatcttggaaatattatttgatgaaggccttgtaatttataattgtaagtagtgtaagtatatactgtcagtgcaacttagttcgctgtacataaattcagttcgaaccgtatattgaatattgaactatttagtggaacccagttgcataccaagttccatgtaa
gi|107009 : ttttttttacatcatagatataggatgaatgcaagatcacaccatccagtgtgcctcggtaatggccgcttgtgaaatggacttgggaagattttcctgtgagtgcaacgctggatgggaagTTTTTTACATCATAG-T-TAG-ACGA-AATGC-AA-G-TCATAACATCC-G-TGTTGCTCA-GGTAA-GGCCGCTG--TGT-AA-TG-GA-CTTG-T-AA----TG-TC--CTGTGAG-TGCA-CGGCTG-ATGGGCAACGGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGGCTACAT----G-T---TGT--TTT--------G-T-CTGTACCAC-A-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107009 : tcACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGGCT-ACA-TGTTGTTTT-GTCTGTACC-ACATTT-CAAAAGCATAGC-TAGAGAAAA-GATTTT--GTG-TC-C--AC-GAAA--AG---AAAGACGA---ATGAT-ACGTATTT-TAA-ATTATC-TG-AAATAA-TATTTGACGAAGGCCTCTG-TAATT-TATTT-AATT-TGTAT-AGTAGTG---AA-TATATA--GTCCATGTGCA---AC--TT-GTTCG--G-TGA--CA----T---AAATTCAGGTT-TGAA-CGTA-TATTGGAAT-AT-T-----GAAC-G--T----------------TAGTGGAAC-----------CCAGTTG-CA-TCCCAAATTCCATGTAAagattttgtgtccacgaaaagaaagacgaatgatacgtattttaaattatctgaaataatatttgacgaaggcctctgtaatttatttaatttgtatagtagtgaatatatagtccatgtgcaacttgttcggtgacataaattcaggtttgaacgtatattggaatattgaacgttagtggaacccagttgcatcccaaattccatgtaa
gi|107010 : tcttttttacatcatagttagacgaaatgcaagtcataacatccgtgttgctcaggtaaggccgctgtgtaatggacttgtaatgtcctgtgagtgcacggctgatgggcaacggTTTTTTTACATCA--GATATAG-ATGA-A-TGC-AATGA-CACACCATCC---TGT-GCTCA--GTAATGGCCGCTGTCTGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGA-C-CAG-A---TG-TCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAACACG--TTCA
gi|107010 : tC-CAG-A---TGT---CCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAACACG--T-TCATTGTAG-TTT-GTCTGTA-CGACttgtagtttgtctgtacgac
gi|107011 : ttttttttacatcagatatagatgaatgcaatgacacaccatcctgtgctcagtaatggccgctgtctgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggaTTTCTTACTACATAGATATAG-ATGA-A-TGC-AA-GACTGTAAAGTCC-G-TGT-GCTCT-GGGAATGGTCGCTG--CCTAAA-TA-GG-CTCGGT-AG-C-TTT-TC--TTGTGTG-TGCA-ACACTGGATGGC-GA-GGACA-GAG-G---TGTTCCGAAAAAGG-T-----ATG--ACG-T----C--AGAG-TCAAAATATTTTTTTTAAAGAA-AC
gi|107011 : tcAG-G---TGT--TCCG-AAAAAGG-T-ATG----AC-G-TC---AGAGTCAAAATATTTTTTTTAAAGAA-AC---T-A-A--GTTA-TTT---TTGCACAAACATTT-CAAAAGCGTGGG-TAGAtaagttatttttgcacaaacatttcaaaagcgtgggtaga
gi|107012 : tctttcttactacatagatatagatgaatgcaagactgtaaagtccgtgtgctctgggaatggtcgctgcctaaataggctcggtagcttttcttgtgtgtgcaacactggatggcgaggacagTTTCTTACTACATAGATATAG-ATGA-A-TGCAAA-GACTGTAAAGTCC-G-TGT-GCTCT-GG-AATGGTCGCGC--CATAAA-TA-GAGCTCAGT--A-C-TTT-TC--TTGTG-G-TGCA-ACACTGGATGCG--A-GGA---CAG-AGTGTGTTCCGAAAAAGG-TA----TTG--ACG-T----C--AGAG-TCAA-ATA-----TTT
gi|107012 : tc-CAG-AGTGTGT--TCCG-AAAAAGG-TATTG----AC-G-TC---AGAGTCAA-ATATTTTTTT-AAA-AA-AC---T-AAA--GTTA-TTT---TTGCACAAACATTTTCAAAAGCGTGGG-TAGAttttaaaaaactaaagttatttttgcacaaacattttcaaaagcgtgggtaga
gi|107013 : tctttcttactacatagatatagatgaatgcaaagactgtaaagtccgtgtgctctggaatggtcgcgccataaatagagctcagtacttttcttgtggtgcaacactggatgcgaggaTTTTTTTACATCATAGATATAG-ACGA-AATGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGAA-TG-GA-CTT-GT-AA-A--TT-TC--CTGTGAG-TGCACGCGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----TTTAAAGAA-ACGC-TACAT----G-T---TGT--TT---------G-T-CTGTACCAACA-TTTCAAAAGC----ATAGCT-----AGAGAA-A
gi|107013 : ACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACGC-T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAAAGATTTT--GTG-TT-CCA-C-GAAA--AA--GAAA---GACGAATGAT-ACGTATTT-TAA-ATTATC-TG-AAATATATATTTGACGAAGGCCTCTG-TAATT-TA-T--AATT-TGTAT-AGTAGTG---AA-TATATA--GT-CATGTGCA---AC--TT-GTTCG-TG-TGA--CA----T---AAATTCA-GTT-TG-A-CGTA-TATT-GAAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAagattttgtgttccacgaaaaagaaagacgaatgatacgtattttaaattatctgaaatatatatttgacgaaggcctctgtaatttataatttgtatagtagtgaatatatagtcatgtgcaacttgttcgtgtgacataaattcagtttgacgtatattgaatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107014 : tttttttacatcatagatatagacgaaatgcaagatcataacatccgtgtgctcaggtaatggccgctgtgtgaatggacttgtaaatttcctgtgagtgcacgcgctggatgggaaggTTTTTTTACATCATAGATATAG-ACGA-A-TGC-AA-GATCATAACATCC-G-TGT-GCTCA-GGTAATGGCCGCTG--TGTGGA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCATGAAAGG-T-----CTG--AAA-T----C--AATG-C----ATA-----CTTAAAGAA-ACG--TACNCC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AATGC----ATATTT-----AAAGAA-ACG--T-ACA-TGTTG-TTT-GTCTGTACCAACATTT-CAAAAGCATAGC-TAGAG-AAA-GATTTT--GTG-TT-CCAAC-GAAA--AG--CAAA---GA---ATGAT-ACGTATTT-TGA-ATTATC-TGAAAATAT-TATTTGATGAAGGCCT-TG-TAATT-TA-TA-AATT-TG--T-AGTAGTG-T-AA-TATATA-TGT-CATGTGCA---AC--TT-GTTCG-TG-T-A--CA----T---AAATTCA-GTT-TGAA-CGTA-TATT-GANN-NN-N-----NNNN-NNNNNNNNNNNNNNNNAATATAATTGAACGTTAGTGGAACCCAGTTG-CA-T-CCAAA-TCCATGTAA
gi|107015 : TCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT-TC--CTGTGAG-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107015 : ACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-------G-TTT---------------CT-CAAAAGCATAGG-TAGAG-AAA-GATTTT--GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAATAT-TATTTGAT---------TG-TGGTT-TA-TA-AATT-TG--T-AGTATTG-TTAA-TATATA-TGT-TGTGTACA---AC--TT-GTTCG-TG-T-A--TG----T---AAATTCA-GTT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CA-T-CCAAATTCCATGTAAgtttctcaaaagcataggtagagaaagattttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaatattatttgattgtggtttataaatttgtagtattgttaatatatatgttgtgtacaacttgttcgtgtatgtaaattcagttcgaacgtatattgcatattgaacgttttagtggaacccagttgcatccaaattccatgtaa
gi|107016 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaattttcctgtgagtgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGA-A-TGC-AA-GACCATAAAATTA-G-TGT-GTTCA-GGCAATGGTCGCTG--TGTGAA-TG-GA-CTTGGT-AA-A-TTT--C--CTGTGGA-TGCA-ACGCTGGATGGG-AA-GGACC-CAG-A---TGTTCCGTGAAAGG-T-----CTG--AAA-T----C--AAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107016 : ACC-CAG-A---TGT--TCCG-TGAAAGG-T-CTG----AA-A-TC---AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGG-TAGAG-AAA-GATTTTT-GTG-TT-TAAAA-GAAA--AA--CAAA---GA---ATGAC-ACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGA--------T-TGTTGGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TATATA-TGT-T-TGTACA---AC--TT-GTTCG-TG-T-GATTG----T---AAATTCA--TT-CGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcataggtagagaaagatttttgtgtttaaaagaaaaacaaagaatgacacatattttaaattatctgaaaaaattattgattgttggttttaaatttgtagtagtgttaatatatatgtttgtacaacttgttcgtgtgattgtaaattcattcgaacgtatattgcatattgaacgttttagtggaacccagttgcattccaaattccatgtaa
gi|107017 : tctttttactacgtagatatagatgaatgcaagaccataaaattagtgtgttcaggcaatggtcgctgtgtgaatggacttggtaaatttcctgtggatgcaacgctggatgggaaggTCTTTTTACTACGTAGATATAG-ATGATA-TGC-AA-GACCATAAAATTA-GGTGT-GTTCAAGGCAATGTCGTCTG--TGTGAA-TGAGA-CTTGGT-AA-AGTTT-TCGTCTGTGAGATGCA-ACGC-GGATGGG-AAAGGACCACAG-A---TGTTCCGTGAAAGGCT-----CTG--AAAAT----CCAAAAG-C----ATA-----TTTAAAGAA-ACT--TA
gi|107017 : ACCACAG-A---TGT--TCCG-TGAAAGGCT-CTG----AA-AATCCA-AAAGC----ATATTT-----AAAGAA-ACT--T-A-----------------GT-------TCT-CAAAAGCATAGCGTAGAG-AAA-GATTTTTTGTG-TT-TAAAAAGAAA--AA--CAAA---GA---ATGACCACATATTT-TAA-ATTATC-TGAAAAAAT-TA-TTGAT------TT-TA-GCGTT-T--TA-AATT-TG--T-AGTAGTGTT-AA-TA-ATA-TGT-T-TGTAC----AC--TT-GTTCGATG-T-G---ATTGTT---AAATTCA--TT-CGAA-CGTA-TATT-GCAA-CT-T-----GAAC-G-TT----------------TAGTGGAA------------CCAGTTG-CATT-CCAAATTCCATGTAAgttctcaaaagcatagcgtagagaaagattttttgtgtttaaaaagaaaaacaaagaatgaccacatattttaaattatctgaaaaaattattgattttagcgttttaaatttgtagtagtgttaataatatgtttgtacacttgttcgatgtgattgttaaattcattcgaacgtatattgcaacttgaacgtttagtggaaccagttgcattccaaattccatgtaa
gi|107018 : tctttttactacgtagatatagatgatatgcaagaccataaaattaggtgtgttcaaggcaatgtcgtctgtgtgaatgagacttggtaaagttttcgtctgtgagatgcaacgcggatgggaaaggTTTTTCTGCAT---AGATATAG-ATGA-G-TGC-AA-GAACGTGACGTCC-G-TGT-GTTCA-GGGAATGGCCGATG--TTTAAA-TA-GA-CCAGGG-AG-T-TTT-TC--TTGTGAG-TGTA-ATACTGGATGGG-AA-GGACC-GAG-A---TGCACTACGAAAGG-T-----ATG--AAA-TAAGAC--ATAGAC----ATA-----TT---AAAA-ACG--TA
gi|107019 : TCACAGATATAA-ATGA-G-TGC-GT-AGCAATGCCGTCT-G-CGT-GCTCA-GGAAACGGGCGGTG--TATAAA-CA-GA-C-AGGG-AG-G-TTTCTA--CTGCGTG-TGTG-ACTCTGGCTGGG-AA-GGAGC-GAG-A---TGTTCCATTAAAGG-TACATACTGTAAAA-T----C--Agtaatggttt
gi|107020 : GAAGAAGGC---TA-TAATT-AG-TA------TG--T-CATGGTG-G-TA-TATATA-TTT-TGTATG-----AC--TT-CTTC----------------------------------AA-CGTA-TATT-GAAA-AT-TCATTTGAAC--TTT----------------TAGTGAAAC-----------CCAATTGATA-T-TCAAATT-CATGTAA
gi|107021 : -TG-TAATG-TA-TA-ATTTGTG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTGTACAAACCATT-TTTCG-TG-TTA--CA----T---AAATTCA-ATTATGAA-CGTA-TACT-GCATTATAT-----GAACCGTTT----------------AAGTGAA-------------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107022 : -AATT-TG--T-GGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TG-T-A--CA----T---AAATTCA-ATT-TGAA-CGTA-TATT-GCAT-AT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107023 : -AATTGTG--TCGGTATTG-TTAA-TACATA-TGT-TGTGTACA---AC--TT-TTTCG-TGGT-A--CA----T---AAATTCA-ATT--GAA-CGTAGTATT-GCATTAT-T-----GAAC-GTTT----------------TAGTGGAAC-----------CCACTTG-CA-T-CCAAATTCCATGTAA
gi|107024 : -TAATTGTA-TGTCATT-TG--T-----GTG-T-A--TATATA-TTT-TGTATG-----AC--TT-CTTCA-CG-T-A--TA----TTGAAAATTCA-ATT-TGAA-C-----------------------------TTT----------------TAGTGAAAC-----------CCAATTG-TA-T-TCAAATTCCATGTAA