lowQualScore                  :                            1111111                                            1111                                    222222                                                                     
lowQualScore                  :    6        4   66 66 2 6  4444444  4      4  0      666    3   3  3 55 3  3  4444    3 55    3  55 3    3          4 111111     2   2 2  2        2  2   2 5555   9999      2 2                 
lowQualScore                  :    .        .   .. .. . .  .......  .      .  .      ...    .   .  . .. .  .  ....    . ..    .  .. .    .          . ......     .   . .  .        .  .   . ....   ....      . .                 
lowQualScore                  :    0        4   11 11 4 7  4444444  4      4  1      444    6   6  6 00 6  6  1111    6 00    6  00 6    6          6 222222     4   4 4  4        9  7   7 7777   3333      7 7                 
consensus                     : AAGCCTCAGTTC-GAA--T--TAGGTC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCA-G-T-TTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-T----TAT----GATTTA-C-TTGTAGAATAATCATCC
Reference ( gi|22718 )        : AAGTCTCAGTTC-GAA--T--TGGGTC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCTA-G-A-TTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-T----TAT----GATTTA-C-TTGTAGAATAATCATCC
gi|22717                      : AAGCCTCAGTTC-GAA--T--TAGGTC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GA-G--C-AT-GG----CGTC-A--TCAC-AT--A-AACA-CACAATATTCCA-G-T-TTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-T----TAT----GATTTA-C-TTGTAGAATAATCATCC
gi|22719                      : AAGCCTCAGTTC-GAA--T--TAGGTC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GT----CGTC-A--GCAC-AT--A-AACA-CACACAATTCCA-G-T-TTAAAC-GGC-G-AT-AACATCGT-AT-GAA-T----TATGA--GATTTA-C-TTGTAGAATAATCATCC
gi|22720                      : AAGCCTCAGTT--GAA--T--TAG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G----ATGGA----CGTC-A--GCAC-AT--A-AACA-CGAAAAATTCCA-GTT-TTAAAC-GGC-G--T-AGCATCGT-AT-TAATT----TAT----GA-TTA-C-TAGTAGAATAATCATCC
gi|22721                      : AAGCCTCAGCTT-GAA--TATTAGGTC-------GCATCCCTC-GCCATTCGA---TTTC-TTG-GT-G--C-AT-GA----CATC-A--GCAC-AT--A-AACA-TACAGAATTCCA-G-T-TTAAAC-GGC-A-AT-AGTAT
gi|22723                      : AAGCCTCAGTTCTGAA--C--TGG-TA-------GC-TTCCTC-GCAATTCGAATCTTGCTTTT-GCTG--C-AG-GA----CGTC-A---TAC-AC--A-AA-A-CAC-AAATTCCA-G---TTTAGC-GGTGG-AT-AG-ATC
gi|22724                      : AGGCCTCCGTTC-GAACAT--TAG--T-------GC-TTCCTCAGCCATT-GA---TTTC-TTTGGC-A--C-AT-GA----AGTCAA--GCACAAT--A-AACATCACAATCTTCCA-G-
gi|22722                      :      TCACTTC-GAA--T--TAGGTCACCTCTGGC-CTCCTC-ACCATTTGA---TTTC-ATT-GC-G--C-AT-GA----CATC-A--GCAC-AT--C-AATA-CACAAAATTCCA-A--------------G-AT-AGCATTGT-AT-TAA-T----AAT----GATCTA-C-TTGTt
gi|22726                      :     aaacaTTC-GAG--T--TATGTC-------GC-CTCCTC-GCTATTCAA---TTTC-TTT-GC-G--C-AT-GACCT-CATC-A--GCAT-GT--A-AACA-GACAAAATTCCACG-A--TAAAC-GGT-G-ATAAGCATTGT-GA-TAA-T----CAT----GATCTA-C-TTGTAGAATAATCATC
gi|22725                      :           TC-GAT--T--AGGGTC-------G--TTCCTC-GC-ATTCGA---TTC---TT-GC-GATCGAC-GAATTCCGTC-ACCGCAC-ATTAATAACA-CACAAAA-TCTA-G-ATTTAAAA-GGC-G-AT-AGCAT-GTAAT-TAA-TATGATAT----G-TTTACC-TTGTAGAACTAT-ATCC
gi|22727                      :                                             cctcTTCAC---TTTC-TTT-GA-G--C-AT-GA----CGTC-A--GCAC-AT--T-AACA-CAT-AAATTCCA-C-T-ATAAACGGGC-G-AT-AACATC
gi|22728                      :                                                     A---TTTC-TTT-GC-A--C-AT-GC----CGCC-A--TCAC-AT--A-AACA-CACAAATTTCCATG-A--TAAAT-GGC-A-AT-AGCATCAT-GT-TAA-T----CATGATCGATCTA-C-CTGTAGAATAATCAACC
gi|22730                      :                                                                                                                           -TTAAAT-GAC-T-AT-AGCATCGT-AT-TAA-T----TAT----GATTTA-C-TTGTAGAATAATCATCC
gi|22733                      :                                                                                                                         gt-TTAAAT-GGC-G-AT-AGCATCGT-CT-TAA-G----TAT----GATTTA-C-TTGCAGAATAATCAT
gi|22734                      :                                                                                                                          t-TTCAAC-GGC-GGAT-AGCATCGT-ATCTAA-T----TAT----GATTTA-CTTTGTAGAATAACCATCC
gi|22731                      :                                                                                                                          t-TTAAAC-GGC-G-AT-AGCGTCGT-AT-CAG-T----CAT----GATCTA-C-TTGAAGAATAATCATC
gi|22735                      :                                                                                                                         gt-TTAAAC-GGC-G-AT-AGCAT--T-A---AA-T----CAT----GATTTA-C-TTGTAGAATAATCATCC
gi|22729                      :                                                                                                                          t-TTAAAC-GGT-G-AC-AGCATCGT-AT-TAA-T----TAT----GATTTA-C-TTGCAGA
gi|22732                      :                                                                                                                            gtAAAC-GGT-G-AT-AGTATCGT-AT-TAA-T----TAT----GATTTA-C-TTGTAGAGTAATCATCC
gi|22736                      :                                                                                                                                                   ttgT-TAA-T----TAT----GATTTA-C-TTGTAGAATAATCATCC





Alignments
lowQualScore                  :                             1111111                                            1111                                                                                                             
lowQualScore                  :             4   55 55    4  3333333  4      4         555    3   3  3 44 3  3  2222    3 44    3  44 3    3             4       2   2 2  2        2  2   2    8888  5555    2 2                 
lowQualScore                  :             .   .. ..    .  .......  .      .         ...    .   .  . .. .  .  ....    . ..    .  .. .    .             .       .   . .  .        .  .   .    ....  ....    . .                 
lowQualScore                  :             0   55 55    0  0000000  0      0         888    3   3  3 66 3  3  9999    3 66    3  66 3    3             2       2   2 2  2        7  5   5    8888  3333    5 5                 
consensus                     : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
Reference ( family-855 )      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22717                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GA-G--C-AT-GG----CGTC-A--TCAC-AT--A-AACA-CACAATATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22718                      : AAGTCTCAGTTC-GAA--T--TGGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCTAG-ATTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22719                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GT----CGTC-A--GCAC-AT--A-AACA-CACACAATTCCAG-TTTAAAC-GGC-G-AT-AACATCGT-AT-GAA-TTATGA--GA----TTTA-C-TTGTAGAATAATCATCC
gi|22720                      : AAGCCTCAGTT--GAA--T--TAG--TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G----ATGGA----CGTC-A--GCAC-AT--A-AACA-CGAAAAATTCCAGTTTTAAAC-GGC-G--T-AGCATCGT-AT-TAATTTAT----GA-----TTA-C-TAGTAGAATAATCATCC
gi|22721                      : AAGCCTCAGCTT-GAA--TATTAGG-TC-------GCATCCCTC-GCCATTCGA---TTTC-TTG-GT-G--C-AT-GA----CATC-A--GCAC-AT--A-AACA-TACAGAATTCCAG-TTTAAAC-GGC-A-AT-AGTAT
gi|22722                      : AAACATCACTTC-GAA--T--TAGG-TCACCTCTGGC-CTCCTC-ACCATTTGA---TTTC-ATT-GC-G--C-AT-GA----CATC-A--GCAC-AT--C-AATA-CACAAAATTCCAA-------------G-AT-AGCATTGT-AT-TAA-TAAT----GA----TCTA-C-TTGT
gi|22723                      : AAGCCTCAGTTCTGAA--C--T-GG-TA-------GC-TTCCTC-GCAATTCGAATCTTGCTTTT-GCTG--C-AG-GA----CGTC-A---TAC-AC--A-AA-A-CAC-AAATTCCAG-TTT-AGC-GGTGG-AT-AG-ATC
gi|22724                      : AGGCCTCCGTTC-GAACAT--TAG---T-------GC-TTCCTCAGCCATT-GA---TTTC-TTTGGC-A--C-AT-GA----AGTCAA--GCACAAT--A-AACATCACAATCTTCCAG-T
gi|22725                      :    CCTC---TC-GA---T--TAGGGTC-------G--TTCCTC-GC-ATTCGA---TTC---TT-GC-GATCGAC-GAATTCCGTC-ACCGCAC-ATTAATAACA-CACAAAA-TCTAGATTTAAAA-GGC-G-AT-AGCAT-GTAAT-TAA--TAT----GATATGTTTACC-TTGTAGAACTAT-ATCC
gi|22726                      :          TTC-GAG--T--TATG-TC-------GC-CTCCTC-GCTATTCAA---TTTC-TTT-GC-G--C-AT-GACCT-CATC-A--GCAT-GT--A-AACA-GACAAAATTCCAC-GATAAAC-GGT-G-ATAAGCATTGT-GA-TAA-TCAT----GA----TCTA-C-TTGTAGAATAATCATC
gi|22727                      :                                                  TTCAC---TTTC-TTT-GA-G--C-AT-GA----CGTC-A--GCAC-AT--T-AACA-CAT-AAATTCCAC-TATAAACGGGC-G-AT-AACATC
gi|22728                      :                                                      A---TTTC-TTT-GC-A--C-AT-GC----CGCC-A--TCAC-AT--A-AACA-CACAAATTTCCAT-GATAAAT-GGC-A-AT-AGCATCAT-GT-TAA-TCATGATCGA----TCTA-C-CTGTAGAATAATCAACC
gi|22729                      :                                                                                                                        G-TTTAAAC-GGT-G-AC-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGCAGA
gi|22730                      :                                                                                                                        G-TTTAAAT-GAC-T-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22731                      :                                                                                                                        G-TTTAAAC-GGC-G-AT-AGCGTCGT-AT-CAG-TCAT----GA----TCTA-C-TTGAAGAATAATCATC
gi|22732                      :                                                                                                                         -TTGAAAC-GGT-G-AT-AGTATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAGTAATCATCC
gi|22733                      :                                                                                                                         -TTTAAAT-GGC-G-AT-AGCATCGT-CT-TAA-GTAT----GA----TTTA-C-TTGCAGAATAATCAT
gi|22734                      :                                                                                                                         -TTTCAAC-GGC-GGAT-AGCATCGT-ATCTAA-TTAT----GA----TTTA-CTTTGTAGAATAACCATCC
gi|22735                      :                                                                                                                         -TTTAAAC-GGC-G-AT-AGCAT--T-A---AA-TCAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22736                      :                                                                                                                                                     T-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC





Alignments
lowQualScore                  :                             1111111                                            1111                                                                                                             
lowQualScore                  :             4   55 55    4  3333333  4      4         555    3   3  3 44 3  3  2222    3 44    3  44 3    3             4       2   2 2  2        2  2   2    8888  5555    2 2                 
lowQualScore                  :             .   .. ..    .  .......  .      .         ...    .   .  . .. .  .  ....    . ..    .  .. .    .             .       .   . .  .        .  .   .    ....  ....    . .                 
lowQualScore                  :             0   55 55    0  0000000  0      0         888    3   3  3 66 3  3  9999    3 66    3  66 3    3             2       2   2 2  2        7  5   5    8888  3333    5 5                 
consensus                     : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
Reference ( family-855 )      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22717                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GA-G--C-AT-GG----CGTC-A--TCAC-AT--A-AACA-CACAATATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22718                      : AAGTCTCAGTTC-GAA--T--TGGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCTAG-ATTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22719                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GT----CGTC-A--GCAC-AT--A-AACA-CACACAATTCCAG-TTTAAAC-GGC-G-AT-AACATCGT-AT-GAA-TTATGA--GA----TTTA-C-TTGTAGAATAATCATCC
gi|22720                      : AAGCCTCAGTT--GAA--T--TAG--TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G----ATGGA----CGTC-A--GCAC-AT--A-AACA-CGAAAAATTCCAGTTTTAAAC-GGC-G--T-AGCATCGT-AT-TAATTTAT----GA-----TTA-C-TAGTAGAATAATCATCC
gi|22721                      : AAGCCTCAGCTT-GAA--TATTAGG-TC-------GCATCCCTC-GCCATTCGA---TTTC-TTG-GT-G--C-AT-GA----CATC-A--GCAC-AT--A-AACA-TACAGAATTCCAG-TTTAAAC-GGC-A-AT-AGTAT
gi|22722                      : AAACATCACTTC-GAA--T--TAGG-TCACCTCTGGC-CTCCTC-ACCATTTGA---TTTC-ATT-GC-G--C-AT-GA----CATC-A--GCAC-AT--C-AATA-CACAAAATTCCAA-------------G-AT-AGCATTGT-AT-TAA-TAAT----GA----TCTA-C-TTGT
gi|22723                      : AAGCCTCAGTTCTGAA--C--T-GG-TA-------GC-TTCCTC-GCAATTCGAATCTTGCTTTT-GCTG--C-AG-GA----CGTC-A---TAC-AC--A-AA-A-CAC-AAATTCCAG-TTT-AGC-GGTGG-AT-AG-ATC
gi|22724                      : AGGCCTCCGTTC-GAACAT--TAG---T-------GC-TTCCTCAGCCATT-GA---TTTC-TTTGGC-A--C-AT-GA----AGTCAA--GCACAAT--A-AACATCACAATCTTCCAG-T
gi|22725                      :    CCTC---TC-GA---T--TAGGGTC-------G--TTCCTC-GC-ATTCGA---TTC---TT-GC-GATCGAC-GAATTCCGTC-ACCGCAC-ATTAATAACA-CACAAAA-TCTAGATTTAAAA-GGC-G-AT-AGCAT-GTAAT-TAA--TAT----GATATGTTTACC-TTGTAGAACTAT-ATCC
gi|22726                      :          TTC-GAG--T--TATG-TC-------GC-CTCCTC-GCTATTCAA---TTTC-TTT-GC-G--C-AT-GACCT-CATC-A--GCAT-GT--A-AACA-GACAAAATTCCAC-GATAAAC-GGT-G-ATAAGCATTGT-GA-TAA-TCAT----GA----TCTA-C-TTGTAGAATAATCATC
gi|22727                      :                                                  TTCAC---TTTC-TTT-GA-G--C-AT-GA----CGTC-A--GCAC-AT--T-AACA-CAT-AAATTCCAC-TATAAACGGGC-G-AT-AACATC
gi|22728                      :                                                      A---TTTC-TTT-GC-A--C-AT-GC----CGCC-A--TCAC-AT--A-AACA-CACAAATTTCCAT-GATAAAT-GGC-A-AT-AGCATCAT-GT-TAA-TCATGATCGA----TCTA-C-CTGTAGAATAATCAACC
gi|22729                      :                                                                                                                        G-TTTAAAC-GGT-G-AC-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGCAGA
gi|22730                      :                                                                                                                        G-TTTAAAT-GAC-T-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22731                      :                                                                                                                        G-TTTAAAC-GGC-G-AT-AGCGTCGT-AT-CAG-TCAT----GA----TCTA-C-TTGAAGAATAATCATC
gi|22732                      :                                                                                                                         -TTGAAAC-GGT-G-AT-AGTATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAGTAATCATCC
gi|22733                      :                                                                                                                         -TTTAAAT-GGC-G-AT-AGCATCGT-CT-TAA-GTAT----GA----TTTA-C-TTGCAGAATAATCAT
gi|22734                      :                                                                                                                         -TTTCAAC-GGC-GGAT-AGCATCGT-ATCTAA-TTAT----GA----TTTA-CTTTGTAGAATAACCATCC
gi|22735                      :                                                                                                                         -TTTAAAC-GGC-G-AT-AGCAT--T-A---AA-TCAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22736                      :                                                                                                                                                     T-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC


blockSeqs                     :             T   CA AT    G  ACCTCTG  A      A         ATC    T   G  T AT G  G  ATTC    A CC    A  TA T    T             T       G   G G  A        A  C   T    GATC  TATG    C T
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  CCT     . .     .  .  .    .             A       .   . .  .        .  .   .    GA    .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :             .   .  .     .  .        .      .         .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                       .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                       .      .   .  . .  .  .  .       . .     .  .  .    .             .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                                                                                         .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                                                                                         .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                                                                                         .       .   . .  .        .  .   .    .     .       . .
blockSeqs                     :                                                                                                                         .       .   . .  .           .   .    .     .       . .
blockSeqs                     :                                                                                                                         .       .   . .  .                                     
blockSeqs                     :                                                                                                                         .       .   . .  .                                     
blockSeqs                     :                                                                                                                         .                                                      


blockSeqCons                  : 
originalCons                  : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
finalCons                     : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC





Alignments
lowQualScore                  :                             1111111                                            1111                                                                                                             
lowQualScore                  :             4   55 55    4  3333333  4      4         555    3   3  3 44 3  3  2222    3 44    3  44 3    3             4       2   2 2  2        2  2   2    8888  5555    2 2                 
lowQualScore                  :             .   .. ..    .  .......  .      .         ...    .   .  . .. .  .  ....    . ..    .  .. .    .             .       .   . .  .        .  .   .    ....  ....    . .                 
lowQualScore                  :             0   55 55    0  0000000  0      0         888    3   3  3 66 3  3  9999    3 66    3  66 3    3             2       2   2 2  2        7  5   5    8888  3333    5 5                 
consensus                     : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
Reference ( family-855 )      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22717                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GA-G--C-AT-GG----CGTC-A--TCAC-AT--A-AACA-CACAATATTCCAG-TTTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22718                      : AAGTCTCAGTTC-GAA--T--TGGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GA----CGTC-A--GCAC-AT--A-AACA-CACAAAATTCTAG-ATTAAAC-GGC-G-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22719                      : AAGCCTCAGTTC-GAA--T--TAGG-TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G--C-AT-GT----CGTC-A--GCAC-AT--A-AACA-CACACAATTCCAG-TTTAAAC-GGC-G-AT-AACATCGT-AT-GAA-TTATGA--GA----TTTA-C-TTGTAGAATAATCATCC
gi|22720                      : AAGCCTCAGTT--GAA--T--TAG--TC-------GC-TTCCTC-GCCATTCGA---TTTC-TTT-GC-G----ATGGA----CGTC-A--GCAC-AT--A-AACA-CGAAAAATTCCAGTTTTAAAC-GGC-G--T-AGCATCGT-AT-TAATTTAT----GA-----TTA-C-TAGTAGAATAATCATCC
gi|22721                      : AAGCCTCAGCTT-GAA--TATTAGG-TC-------GCATCCCTC-GCCATTCGA---TTTC-TTG-GT-G--C-AT-GA----CATC-A--GCAC-AT--A-AACA-TACAGAATTCCAG-TTTAAAC-GGC-A-AT-AGTAT
gi|22722                      : AAACATCACTTC-GAA--T--TAGG-TCACCTCTGGC-CTCCTC-ACCATTTGA---TTTC-ATT-GC-G--C-AT-GA----CATC-A--GCAC-AT--C-AATA-CACAAAATTCCAA-------------G-AT-AGCATTGT-AT-TAA-TAAT----GA----TCTA-C-TTGT
gi|22723                      : AAGCCTCAGTTCTGAA--C--T-GG-TA-------GC-TTCCTC-GCAATTCGAATCTTGCTTTT-GCTG--C-AG-GA----CGTC-A---TAC-AC--A-AA-A-CAC-AAATTCCAG-TTT-AGC-GGTGG-AT-AG-ATC
gi|22724                      : AGGCCTCCGTTC-GAACAT--TAG---T-------GC-TTCCTCAGCCATT-GA---TTTC-TTTGGC-A--C-AT-GA----AGTCAA--GCACAAT--A-AACATCACAATCTTCCAG-T
gi|22725                      :    CCTC---TC-GA---T--TAGGGTC-------G--TTCCTC-GC-ATTCGA---TTC---TT-GC-GATCGAC-GAATTCCGTC-ACCGCAC-ATTAATAACA-CACAAAA-TCTAGATTTAAAA-GGC-G-AT-AGCAT-GTAAT-TAA--TAT----GATATGTTTACC-TTGTAGAACTAT-ATCC
gi|22726                      :          TTC-GAG--T--TATG-TC-------GC-CTCCTC-GCTATTCAA---TTTC-TTT-GC-G--C-AT-GACCT-CATC-A--GCAT-GT--A-AACA-GACAAAATTCCAC-GATAAAC-GGT-G-ATAAGCATTGT-GA-TAA-TCAT----GA----TCTA-C-TTGTAGAATAATCATC
gi|22727                      :                                                  TTCAC---TTTC-TTT-GA-G--C-AT-GA----CGTC-A--GCAC-AT--T-AACA-CAT-AAATTCCAC-TATAAACGGGC-G-AT-AACATC
gi|22728                      :                                                      A---TTTC-TTT-GC-A--C-AT-GC----CGCC-A--TCAC-AT--A-AACA-CACAAATTTCCAT-GATAAAT-GGC-A-AT-AGCATCAT-GT-TAA-TCATGATCGA----TCTA-C-CTGTAGAATAATCAACC
gi|22729                      :                                                                                                                        G-TTTAAAC-GGT-G-AC-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGCAGA
gi|22730                      :                                                                                                                        G-TTTAAAT-GAC-T-AT-AGCATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22731                      :                                                                                                                        G-TTTAAAC-GGC-G-AT-AGCGTCGT-AT-CAG-TCAT----GA----TCTA-C-TTGAAGAATAATCATC
gi|22732                      :                                                                                                                         -TTGAAAC-GGT-G-AT-AGTATCGT-AT-TAA-TTAT----GA----TTTA-C-TTGTAGAGTAATCATCC
gi|22733                      :                                                                                                                         -TTTAAAT-GGC-G-AT-AGCATCGT-CT-TAA-GTAT----GA----TTTA-C-TTGCAGAATAATCAT
gi|22734                      :                                                                                                                         -TTTCAAC-GGC-GGAT-AGCATCGT-ATCTAA-TTAT----GA----TTTA-CTTTGTAGAATAACCATCC
gi|22735                      :                                                                                                                         -TTTAAAC-GGC-G-AT-AGCAT--T-A---AA-TCAT----GA----TTTA-C-TTGTAGAATAATCATCC
gi|22736                      :                                                                                                                                                     T-TAA-TTAT----GA----TTTA-C-TTGTAGAATAATCATCC