lowQualScore : 111 1
lowQualScore : 777 2 0 2 22 66 2 4444 2 6
lowQualScore : ... . . . .. .. . .... . .
lowQualScore : 666 7 3 4 99 44 1 5555 1 6
consensus : AATA-NCAAC-GGGGTTC-GAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Reference ( gi|108408 ) : AATA-CCAAC-GGGGTAC-GAATTGACTG--GATG-CC-TAAC----ATGGCTACGTCAA-CAAACGGAAT
gi|108407 : AATA-CAAAC-GGGGTAC-GAATTGACTG--GATA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108410 : AATA-CTAAC-GGGGTAC-GAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CA
gi|108411 : AATA-GAAAC-GAGGTTC-GAATTGACTG--GGAA-CC-TAAC----ATGGCTACGTCAA-CAGACGAAAT
gi|108413 : AATA-ACAAC-GGG-TAC-GAATTGACTG--AATA-CC-TAAC----AT-GCTACG-CAA-CAAACGAAA
gi|108414 : AATA---AACAGGGGTTC-GAATTGACCG--GGTA-CT-TAAC----ATGGCTACGACAA-CAGACGAAAT
gi|108416 : AATAATCAAC-GGCTT-C-GAATTGACTT--GCTA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108417 : AAAA-TCAGC-AGGGTTC-TAAATGGCTG--GTTA-CC-CAAC----ATGGCTAGGTCAA-CAAACGAAAT
gi|108421 : ataAAC-GGGGTAC-GAATTGACTG--GATG-CC-TAAC----ATGGCTACGTT-A-CAAAC
gi|108420 : AGC-GGGGTTC-GAATTGACCG--GGTA-CC-TAAC----A-GGCTACGTCAA-CAGACGAAATaa
gi|108423 : aaAAC-GGGGTTC-GAATTTACTG--GATA-TC-TAACATCGATGGCTACGTCAA-C
gi|108422 : AAT-GGGGTTC-GAATTGACTG--GATA-CC-TA------------ATGTCAA-CAGACGAAAT
gi|108418 : AAT-AGGGTTA-GAATGGACAG--GATA-CC-TAAC----ATGGTTACACCAG-TAAACAAAAT
gi|108415 : ataggAC-GGGGTTC-AAATTGTATG--GTTA-CC-TAAC----ATGGCTACGTCAA-CGAA
gi|108412 : aataaagC-GGGGTTC-GAATTGACCG--GGTG-CC-TAAC----ATGGCTACGTCAA-CAAACGAAA
gi|108409 : aataaacC-GAGGTTC-GAATTGACCG--GGTA-CC-TAAG----ATGGCTACGACAA-CAGACGAAAT
gi|108419 : aataaacTACAGAATTTACTGAAGATAACCGTAAC----ATGGCTACGTCAACCAGACGAAAT
gi|108424 : taaaaacgaaaca-GAAGTGACAG--GATA-CT-TAAC----ATGGCTACCTCAA-GAAACGAAAT
gi|108425 : ATTG--GATA-CC-TAAC----ATGGCTACATCAA-CAGATGAAAT
gi|108426 : TG--GATA-CC-TAAC----ATGGCTACGTCAA-CTAACGTAAT
Alignments
lowQualScore : 111
lowQualScore : 777 2 22 2 2 4444 2
lowQualScore : ... . .. . . .... .
lowQualScore : 777 5 88 0 0 2222 0
consensus : AATAN-NAAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Reference ( family-852 ) : AATAN-CAAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
gi|108407 : AATAC-AAAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108408 : AATAC-CAAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTCAA-CAAACGGAAT
gi|108409 : AATAA--ACC-GAGGTTCGAATTGACCG--GGTA-CC-TAAG----ATGGCTACGACAA-CAGACGAAAT
gi|108410 : AATAC-TAAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CA
gi|108411 : AATAG-AAAC-GAGGTTCGAATTGACTG--GGAA-CC-TAAC----ATGGCTACGTCAA-CAGACGAAAT
gi|108412 : AATAA--ACC-GGGGTTCGAATTGACCG--GGTG-CC-TAAC----ATGGCTACGTCAA-CAAACGAAA
gi|108413 : AATAA-CAAC-GGG-TACGAATTGACTG--AATA-CC-TAAC----AT-GCTACG-CAA-CAAACGAAA
gi|108414 : AATA---AACAGGGGTTCGAATTGACCG--GGTA-CT-TAAC----ATGGCTACGACAA-CAGACGAAAT
gi|108415 : AATAA-AGAC-GGGGTTCAAATTGTATG--GTTA-CC-TAAC----ATGGCTACGTCAA-CGAA
gi|108416 : AATAATCAAC-GGC-TTCGAATTGACTT--GCTA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108417 : AAAAT-CAGC-AGGGTTCTAAATGGCTG--GTTA-CC-CAAC----ATGGCTAGGTCAA-CAAACGAAAT
gi|108418 : ataATAG-GAAT-AGGGTTAGAATGGACAG--GATA-CC-TAAC----ATGGTTACACCAG-TAAACAAAAT
gi|108419 : GAATTTACTGAAGATAACCGTAAC----ATGGCTACGTCAACCAGACGAAAT
gi|108420 : taaaaacgaaacatacaAGC-GGGGTTCGAATTGACCG--GGTA-CC-TAAC----A-GGCTACGTCAA-CAGACGAAAT
gi|108421 : aaAAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTT-A-CAAACAA
gi|108422 : AAT-GGGGTTCGAATTGACTG--GATA-CC-TA------------ATGTCAA-CAGACGAAAT
gi|108423 : AAC-GGGGTTCGAATTTACTG--GATA-TC-TAACATCGATGGCTACGTCAA-
gi|108424 : GAAGTGACAG--GATA-CT-TAAC----ATGGCTACCTCAA-GAAACGAAAT
gi|108425 : ATTG--GATA-CC-TAAC----ATGGCTACATCAA-CAGATGAAAT
gi|108426 : TG--GATA-CC-TAAC----ATGGCTACGTCAA-CTAACGTAAT
Alignments
lowQualScore : 111
lowQualScore : 111 2 22 2 2 4444 2
lowQualScore : ... . .. . . .... .
lowQualScore : 000 5 88 0 0 2222 0
consensus : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Reference ( family-852 ) : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
gi|108407 : AATACA-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108408 : AATACC-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTCAA-CAAACGGAAT
gi|108409 : AATAA--ACC-GAGGTTCGAATTGACCG--GGTA-CC-TAAG----ATGGCTACGACAA-CAGACGAAAT
gi|108410 : AATACT-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CA
gi|108411 : AATAGA-AAC-GAGGTTCGAATTGACTG--GGAA-CC-TAAC----ATGGCTACGTCAA-CAGACGAAAT
gi|108412 : AATAA--ACC-GGGGTTCGAATTGACCG--GGTG-CC-TAAC----ATGGCTACGTCAA-CAAACGAAA
gi|108413 : AATAAC-AAC-GGG-TACGAATTGACTG--AATA-CC-TAAC----AT-GCTACG-CAA-CAAACGAAA
gi|108414 : ATA-AACAGGGGTTCGAATTGACCG--GGTA-CT-TAAC----ATGGCTACGACAA-CAGACGAAAT
gi|108415 : aAATAAA-GAC-GGGGTTCAAATTGTATG--GTTA-CC-TAAC----ATGGCTACGTCAA-CGAA
gi|108416 : AATAATCAAC-GGC-TTCGAATTGACTT--GCTA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108417 : AAAATC-AGC-AGGGTTCTAAATGGCTG--GTTA-CC-CAAC----ATGGCTAGGTCAA-CAAACGAAAT
gi|108418 : ataATAGG-AAT-AGGGTTAGAATGGACAG--GATA-CC-TAAC----ATGGTTACACCAG-TAAACAAAAT
gi|108419 : GAATTTACTGAAGATAACCGTAAC----ATGGCTACGTCAACCAGACGAAAT
gi|108420 : taaaaacgaaacataca-AGC-GGGGTTCGAATTGACCG--GGTA-CC-TAAC----A-GGCTACGTCAA-CAGACGAAAT
gi|108421 : aa-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTT-A-CAAACAA
gi|108422 : -AAT-GGGGTTCGAATTGACTG--GATA-CC-TA------------ATGTCAA-CAGACGAAAT
gi|108423 : -AAC-GGGGTTCGAATTTACTG--GATA-TC-TAACATCGATGGCTACGTCAA-
gi|108424 : GAAGTGACAG--GATA-CT-TAAC----ATGGCTACCTCAA-GAAACGAAAT
gi|108425 : ATTG--GATA-CC-TAAC----ATGGCTACATCAA-CAGATGAAAT
gi|108426 : TG--GATA-CC-TAAC----ATGGCTACGTCAA-CTAACGTAAT
Alignments
lowQualScore : 111
lowQualScore : 111 2 22 2 2 4444 2
lowQualScore : ... . .. . . .... .
lowQualScore : 000 5 88 0 0 2222 0
consensus : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Reference ( family-852 ) : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
gi|108407 : AATACA-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108408 : AATACC-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTCAA-CAAACGGAAT
gi|108409 : AATAA--ACC-GAGGTTCGAATTGACCG--GGTA-CC-TAAG----ATGGCTACGACAA-CAGACGAAAT
gi|108410 : AATACT-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CA
gi|108411 : AATAGA-AAC-GAGGTTCGAATTGACTG--GGAA-CC-TAAC----ATGGCTACGTCAA-CAGACGAAAT
gi|108412 : AATAA--ACC-GGGGTTCGAATTGACCG--GGTG-CC-TAAC----ATGGCTACGTCAA-CAAACGAAA
gi|108413 : AATAAC-AAC-GGG-TACGAATTGACTG--AATA-CC-TAAC----AT-GCTACG-CAA-CAAACGAAA
gi|108414 : ATA-AACAGGGGTTCGAATTGACCG--GGTA-CT-TAAC----ATGGCTACGACAA-CAGACGAAAT
gi|108415 : aAATAAA-GAC-GGGGTTCAAATTGTATG--GTTA-CC-TAAC----ATGGCTACGTCAA-CGAA
gi|108416 : AATAATCAAC-GGC-TTCGAATTGACTT--GCTA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108417 : AAAATC-AGC-AGGGTTCTAAATGGCTG--GTTA-CC-CAAC----ATGGCTAGGTCAA-CAAACGAAAT
gi|108418 : ataATAGG-AAT-AGGGTTAGAATGGACAG--GATA-CC-TAAC----ATGGTTACACCAG-TAAACAAAAT
gi|108419 : GAATTTACTGAAGATAACCGTAAC----ATGGCTACGTCAACCAGACGAAAT
gi|108420 : taaaaacgaaacataca-AGC-GGGGTTCGAATTGACCG--GGTA-CC-TAAC----A-GGCTACGTCAA-CAGACGAAAT
gi|108421 : aa-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTT-A-CAAACAA
gi|108422 : -AAT-GGGGTTCGAATTGACTG--GATA-CC-TA------------ATGTCAA-CAGACGAAAT
gi|108423 : -AAC-GGGGTTCGAATTTACTG--GATA-TC-TAACATCGATGGCTACGTCAA-
gi|108424 : GAAGTGACAG--GATA-CT-TAAC----ATGGCTACCTCAA-GAAACGAAAT
gi|108425 : ATTG--GATA-CC-TAAC----ATGGCTACATCAA-CAGATGAAAT
gi|108426 : TG--GATA-CC-TAAC----ATGGCTACGTCAA-CTAACGTAAT
blockSeqs : ATC A AA A G ATCG C
blockSeqs : CC . . . . . .
blockSeqs : CT . . . . . .
blockSeqs : GA . . . . . .
blockSeqs : AC . . . . . .
blockSeqs : TA . . . . . .
blockSeqs : AA . . . . . .
blockSeqs : TC . . . . . .
blockSeqs : GG . . . . . .
blockSeqs : A . . . . . .
blockSeqs : A . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
finalCons : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Alignments
lowQualScore : 111
lowQualScore : 111 2 22 2 2 4444 2
lowQualScore : ... . .. . . .... .
lowQualScore : 000 5 88 0 0 2222 0
consensus : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
Reference ( family-852 ) : AATANN-AAC-GGGGTTCGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CAAACGAAAT
gi|108407 : AATACA-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108408 : AATACC-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTCAA-CAAACGGAAT
gi|108409 : AATAA--ACC-GAGGTTCGAATTGACCG--GGTA-CC-TAAG----ATGGCTACGACAA-CAGACGAAAT
gi|108410 : AATACT-AAC-GGGGTACGAATTGACTG--GATA-CC-TAAC----ATGGCTACGTCAA-CA
gi|108411 : AATAGA-AAC-GAGGTTCGAATTGACTG--GGAA-CC-TAAC----ATGGCTACGTCAA-CAGACGAAAT
gi|108412 : AATAA--ACC-GGGGTTCGAATTGACCG--GGTG-CC-TAAC----ATGGCTACGTCAA-CAAACGAAA
gi|108413 : AATAAC-AAC-GGG-TACGAATTGACTG--AATA-CC-TAAC----AT-GCTACG-CAA-CAAACGAAA
gi|108414 : ATA-AACAGGGGTTCGAATTGACCG--GGTA-CT-TAAC----ATGGCTACGACAA-CAGACGAAAT
gi|108415 : aAATAAA-GAC-GGGGTTCAAATTGTATG--GTTA-CC-TAAC----ATGGCTACGTCAA-CGAA
gi|108416 : AATAATCAAC-GGC-TTCGAATTGACTT--GCTA-CC-TAAC----ATGGCTACTTCAA-CAAACGAAAT
gi|108417 : AAAATC-AGC-AGGGTTCTAAATGGCTG--GTTA-CC-CAAC----ATGGCTAGGTCAA-CAAACGAAAT
gi|108418 : ataATAGG-AAT-AGGGTTAGAATGGACAG--GATA-CC-TAAC----ATGGTTACACCAG-TAAACAAAAT
gi|108419 : GAATTTACTGAAGATAACCGTAAC----ATGGCTACGTCAACCAGACGAAAT
gi|108420 : taaaaacgaaacataca-AGC-GGGGTTCGAATTGACCG--GGTA-CC-TAAC----A-GGCTACGTCAA-CAGACGAAAT
gi|108421 : aa-AAC-GGGGTACGAATTGACTG--GATG-CC-TAAC----ATGGCTACGTT-A-CAAACAA
gi|108422 : -AAT-GGGGTTCGAATTGACTG--GATA-CC-TA------------ATGTCAA-CAGACGAAAT
gi|108423 : -AAC-GGGGTTCGAATTTACTG--GATA-TC-TAACATCGATGGCTACGTCAA-
gi|108424 : GAAGTGACAG--GATA-CT-TAAC----ATGGCTACCTCAA-GAAACGAAAT
gi|108425 : ATTG--GATA-CC-TAAC----ATGGCTACATCAA-CAGATGAAAT
gi|108426 : TG--GATA-CC-TAAC----ATGGCTACGTCAA-CTAACGTAAT