lowQualScore : 11 111111111111111
lowQualScore : 4 88 33 2 2 2 55555 666666 2 55 7 222222222222222 2 1 2 2 6 2 77 2 2 2 6 6 2 33 7 2
lowQualScore : . .. .. . . . ..... ...... . .. . ............... . . . . . . .. . . . . . . .. . .
lowQualScore : 8 99 11 1 1 1 33333 111111 1 88 3 666666666666666 1 8 1 1 3 2 99 1 1 1 3 3 1 11 1 4
consensus : GCCGACTGCAAGTTNAG--CTG-GTGAGTTATG-T-C-----T------GGT-GCTG-AGGACCCANA------C--C-----TC-TCGTCGAAT-TTCC-C-CACGT-TT-TCT-C-CAA-GACTG-A-GG--TTGG-GTG-AGAT
Reference ( gi|18296 ) : GCCAACTGCAAGTTAGG--CTG-GTGAGTTATG-T-C-----T------GGT-GCTT-AGGACCCATA------C--C-----TC-TCGTCGAAT-TTTC-C-CACGT-TT-TCT-C-CAA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18298 : GCCGACTGCAAGTTAAG--CTG-GTGAGTTATA-T-A-----T------GGT-GCTG-AGGACTCGTA------C--A-----TC-TCGTCGATT-TTTC-C-CACGT-TT-TCT-C-CAA-GACTG-A--G--TTGG-TTG-AGAT
gi|18291 : GCCAACTGCAAGTTCAG--CTG-GTGAGTTATA-T-C-----T------GTT-GCTG-AGGACCCAAA------C--C-----TC-TCGTCGAAT-TTCC-C-CAGGT-TT-TCT-C-TAA-GACCG-A-GT--TTGA-GTG-AGAT
gi|18300 : GCCGACTGCAAGTTAAGAGCTG-GTGAGTTATG-T-C-----T------GGT-GCTG-AGGACCCATA------CATC-----TC-TC-TCGAAT-TTCC-C-CACGT-TT-TCT-TACAA-GACTG-A-GG--TT-G-TTG-AGAT
gi|18292 : GTCGACTGAAAGTTCAG--CTG-CTGAGTTATG-G-C-----T------GGT-GCTG-AGGACCCAAA------C--C-----TC-TCGTCGAAT-TTCC-C-CAGGA-TT-TCT-C-CAA-GACTG-A-GG--TTGG-ATG-AGAT
gi|18293 : GCTGGCTGCAAATTCAG--CTG-GTGAGTTATG-T-C-----T------GAT-GCTG-AGGACCAA-A------C--C-----TC-TCGTCGAAT-TTTC-C-CAGGA-TT-TCT-T-CAA-GACTG-G-GG--TTGA-GTG-AGAT
gi|18303 : GCCGACT-CAAGTTAAG--CTA-G-GAGTTATG-T-C-----T------GGT-GCTG-AGGACCCATA------C--C-----TC-TC-TCGAAT-TTTC-CGCACGTATT-TCT-C-CAAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18302 : GCCGACT-CAAGTTAAG--CTA-G-GAGTTATG-T-C-----T------GGT-GCTG-AGGACCCATA------C--C-----TC-TC-TCGAAT-TTTC-CGCACGTATT-TCT-C-CAAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18301 : GCCGACT-CAAGTTAAG--CTA-G-GAGTTATG-T-C-----T------GGT-GCTG-AGGACCCATA------C--C-----TC-TC-TCGAAT-TTTC-CGCACGTATT-TCT-C-CAAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18297 : GCCGACTGGAAGTTCAT--CTG-GTGAGTTATG-T-C-----T------GGT-GCTG-AGGACCGAAA------C--C-----TC-AAGTCGAAT-TTCC-T-CAGGG-TT-TCT-C-CAA-GACTG-C-GG--TTGG-GTG-AG
gi|18294 : GCCGACTGGAAGTTCAG--CTG-GTGAGTTAT--T-C-----T------GTT-GCTG-AGGATCCAAA------G--C-----TC-TTGTGGAAT-TTCC-C-CATAG-TT-TCT-G-CAA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18295 : GCCGACTG-AAGTCAG---CTG-GTGAGTTAT--T-C-----T------GTT-GCTG-AGGATCCAAA------G--C-----TC-TTGTGGAAT-TTCC-C-CATAG-TT-TCT-G-CAA-GACTG-A-GG--TTGG-GTGAAGAT
gi|18304 : GCCGCTTGGAAATTCAG--TTG-GTGTGTGATG-T-T-----G------GGC-GCTG-AAGATCCAAA------C--C-----TC-TTCTCAAAT-CTCC-T-CAATA-TG-TAT-C-CGA-AACTC-G-GG--TTGG-GCA-AGGT
gi|18307 : ACTGCAAGTTCAG--CTG-GTGAGTTATG-T-TATGTTT------GGT-GCTG-AGGACCCAAA------C--CAAACCTA-TCGTTGAAT-TTCC-C-CACGT-TT-TCT-C-CAA-GACTG-A-TG--TTGG-ATG-GGAT
gi|18306 : ACTGCAAGTTTAG--CTG-GTGAGTTATG-T-C-----T------TGT-GCTG-AGGACCCAAAACCTCTC--CGAG--TC-TCGTCGAAT-TTCC-C-CAGGA-TT-TCT-C-CAA-GACTG-A-GG--TAGG-GTG-ATAT
gi|18299 : gACTGCAAGTTCAG--CTG-GTAAGTTATG-T-C-----T------AGT-GCTG-AGAACCCAAA------C--C-----TT-TCGTCGAAT-TTCC-T-CAGGT-TT-TCT-C-GAA-GACTG-A-
gi|18305 : gcggCTGCAAGTTAAC--TCG-GTTGATTATGGT-C-----T------GGTCGCTTGAGGACCCATA------C--A-----TCTTCGTCGAA---TTC-C-CACGT-TTCCCC-C-CAA-GACTG-A-GGTTTTGG-TTG-AGAT
gi|18308 : gtcgacTGCAAGT-AAG--CTGCGTGAGTTATG-T-C-----TAGATCTGGT-GTTG-AGGGACCATA------A--------TC-TCGTCGAAT-TTTC-C-CACGT-TT-TCTCC-CAA-GACTG-A--G--TTGG-TTG-AGAT
gi|18310 : --CTG-GTGAGTTATG-T-C-----T------GGT-GCTG-GGGACCCAAA------G--C-----TC-TCGTCGAAT-TATC-C-CAGGA-TT-TCT-T-CAA-GACTC-G-GG--TTGG-ATG-AGAT
gi|18309 : TG-GTGAGTTATG-TAC-----T------GGT-GCTG-AGGACCCATA------CAGA-----TC-TCGTCGAATATGTCTC-TACGT-TA-T-----CAA-GACTG-AGGG--TTG
Alignments
lowQualScore : 11111111111
lowQualScore : 2 1 22 2 2 2 2 55555 555555 2 2 2 1 44444444444 2 1 2 2 6 1 77 2 2 2 6 6 2 22 6 2
lowQualScore : . . .. . . . . ..... ...... . . . . ........... . . . . . . .. . . . . . . .. . .
lowQualScore : 2 0 88 0 0 0 0 00000 888888 0 0 0 0 00000000000 0 2 0 0 0 6 11 0 0 0 0 0 0 99 7 2
consensus : GCCGAC-TGCAAGTTCAG--C-TG-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
Reference ( family-851 ) : GCCGAC-TGCAAGTTNAG--C-TG-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18291 : GCCAAC-TGCAAGTTCAG--C-TG-GTGAGTTATA-T-C-----T------GTT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGT-TTTCT-C-T-AA-GACCG-A-GT--TTGA-GTG-AGAT
gi|18292 : GTCGAC-TGAAAGTTCAG--C-TG-CTGAGTTATG-G-C-----T------GGT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TTGG-ATG-AGAT
gi|18293 : GCTGGC-TGCAAATTCAG--C-TG-GTGAGTTATG-T-C-----T------GAT-GCT-GAGGACC--AAAC--C--------TCT-CGTCGAAT-T-TTCC-CAGGA-TTTCT-T-C-AA-GACTG-G-GG--TTGA-GTG-AGAT
gi|18294 : GCCGAC-TGGAAGTTCAG--C-TG-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18295 : GCCGAC-TG-AAGT-CAG--C-TG-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTGAAGAT
gi|18296 : GCCAAC-TGCAAGTTAGG--C-TG-GTGAGTTATG-T-C-----T------GGT-GCT-TAGGACCC-ATAC--C--------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18297 : GCCGAC-TGGAAGTTCAT--C-TG-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCG-AAAC--C--------TCA-AGTCGAAT-T-TCCT-CAGGG-TTTCT-C-C-AA-GACTG-C-GG--TTGG-GTG-AG
gi|18298 : GCCGAC-TGCAAGTTAAG--C-TG-GTGAGTTATA-T-A-----T------GGT-GCT-GAGGACTC-GTAC--A--------TCT-CGTCGATT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18299 : GCGGAC-TGCAAGTTCAG--C-TG-GTAAGTTATG-T-C-----T------AGT-GCT-GAGAACCC-AAAC--C--------TTT-CGTCGAAT-T-TCCT-CAGGT-TTTCT-C-G-AA-GACTG-A-
gi|18300 : GCCGAC-TGCAAGTTAAGAGC-TG-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATACATC--------TCT-C-TCGAAT-T-TCCC-CACGT-TTTCT-TAC-AA-GACTG-A-GG--TT-G-TTG-AGAT
gi|18301 : GCCGAC-T-CAAGTTAAG--C-TA-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18302 : GCCGAC-T-CAAGTTAAG--C-TA-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18303 : GCCGAC-T-CAAGTTAAG--C-TA-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18304 : GCCGCT-TGGAAATTCAG--T-TG-GTGTGTGATG-T-T-----G------GGC-GCT-GAAGATCC-AAAC--C--------TCT-TCTCAAAT-C-TCCT-CAATA-TGTAT-C-C-GA-AACTC-G-GG--TTGG-GCA-AGGT
gi|18305 : GTCGACCTGCAAGTTAAC--T-CG-GTTGATTATGGT-C-----T------GGTCGCTTGAGGACCC-ATAC--A--------TCTTCGTCGAAT-T---CC-CACGT-TTCCC-C-CCAA-GACTG-A-GGTTTTGG-TTG-AGAT
gi|18306 : GAC-TGCAAGTTTAG--C-TG-GTGAGTTATG-T-C-----T------TGT-GCT-GAGGACCCAAAAC--CTCTCCGAGTCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TAGG-GTG-ATAT
gi|18307 : AC-TGCAAGTTCAG--C-TG-GTGAGTTATG-T-TATGTTT------GGT-GCT-GAGGACCC-AAAC--CAAACC---TAT-CGTTGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-TG--TTGG-ATG-GGAT
gi|18308 : -TGCAAGT-AAG--C-TGCGTGAGTTATG-T-C-----TAGATCTGGT-GTT-GAGGGACC-ATAA-----------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCTCC-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18309 : AG--CATG-GTGAGTTATG-TAC-----T------GGT-GCT-GAGGACCC-ATACAGA--------TCT-CGTCGAATATGTCTC-TACGT-TAT-----C-AA-GACTG-AGGG--TTG
gi|18310 : --C-TG-GTGAGTTATG-T-C-----T------GGT-GCT-GGGGACCC-AAAG--C--------TCT-CGTCGAAT-T-ATCC-CAGGA-TTTCT-T-C-AA-GACTC-G-GG--TTGG-ATG-AGATaagat
Alignments
lowQualScore : 11111111111
lowQualScore : 2 3 22 2 2 2 2 2 55555 555555 2 2 2 1 44444444444 2 1 2 2 6 1 77 2 2 2 6 6 2 22 6 2
lowQualScore : . . .. . . . . . ..... ...... . . . . ........... . . . . . . .. . . . . . . .. . .
lowQualScore : 2 4 88 0 0 0 0 0 00000 888888 0 0 0 0 00000000000 0 2 0 0 0 6 11 0 0 0 0 0 0 99 7 2
consensus : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
Reference ( family-851 ) : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18291 : GCCAAC-TGCAAGTTCAG--C-T-G-GTGAGTTATA-T-C-----T------GTT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGT-TTTCT-C-T-AA-GACCG-A-GT--TTGA-GTG-AGAT
gi|18292 : GTCGAC-TGAAAGTTCAG--C-T-G-CTGAGTTATG-G-C-----T------GGT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TTGG-ATG-AGAT
gi|18293 : GCTGGC-TGCAAATTCAG--C-T-G-GTGAGTTATG-T-C-----T------GAT-GCT-GAGGACC--AAAC--C--------TCT-CGTCGAAT-T-TTCC-CAGGA-TTTCT-T-C-AA-GACTG-G-GG--TTGA-GTG-AGAT
gi|18294 : GCCGAC-TGGAAGTTCAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18295 : GCCGAC-TG-AAGT-CAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTGAAGAT
gi|18296 : GCCAAC-TGCAAGTTAGG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-TAGGACCC-ATAC--C--------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18297 : GCCGAC-TGGAAGTTCAT--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCG-AAAC--C--------TCA-AGTCGAAT-T-TCCT-CAGGG-TTTCT-C-C-AA-GACTG-C-GG--TTGG-GTG-AG
gi|18298 : GCCGAC-TGCAAGTTAAG--C-T-G-GTGAGTTATA-T-A-----T------GGT-GCT-GAGGACTC-GTAC--A--------TCT-CGTCGATT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18299 : GCGGAC-TGCAAGTTCAG--C-T-G-GTAAGTTATG-T-C-----T------AGT-GCT-GAGAACCC-AAAC--C--------TTT-CGTCGAAT-T-TCCT-CAGGT-TTTCT-C-G-AA-GACTG-A-
gi|18300 : GCCGAC-TGCAAGTTAAGAGC-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATACATC--------TCT-C-TCGAAT-T-TCCC-CACGT-TTTCT-TAC-AA-GACTG-A-GG--TT-G-TTG-AGAT
gi|18301 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18302 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18303 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18304 : GCCGCT-TGGAAATTCAG--T-T-G-GTGTGTGATG-T-T-----G------GGC-GCT-GAAGATCC-AAAC--C--------TCT-TCTCAAAT-C-TCCT-CAATA-TGTAT-C-C-GA-AACTC-G-GG--TTGG-GCA-AGGT
gi|18305 : GTCGACCTGCAAGTT-AA--C-TCG-GTTGATTATGGT-C-----T------GGTCGCTTGAGGACCC-ATAC--A--------TCTTCGTCGAAT-T---CC-CACGT-TTCCC-C-CCAA-GACTG-A-GGTTTTGG-TTG-AGAT
gi|18306 : GAC-TGCAAGTTTAG--C-T-G-GTGAGTTATG-T-C-----T------TGT-GCT-GAGGACCCAAAAC--CTCTCCGAGTCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TAGG-GTG-ATAT
gi|18307 : AC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-TATGTTT------GGT-GCT-GAGGACCC-AAAC--CAAACC---TAT-CGTTGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-TG--TTGG-ATG-GGAT
gi|18308 : -TGCAAGT-AAG--C-T-GCGTGAGTTATG-T-C-----TAGATCTGGT-GTT-GAGGGACC-ATAA-----------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCTCC-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18309 : AG--CAT-G-GTGAGTTATG-TAC-----T------GGT-GCT-GAGGACCC-ATACAGA--------TCT-CGTCGAATATGTCTC-TACGT-TAT-----C-AA-GACTG-AGGG--TTG
gi|18310 : --C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GGGGACCC-AAAG--C--------TCT-CGTCGAAT-T-ATCC-CAGGA-TTTCT-T-C-AA-GACTC-G-GG--TTGG-ATG-AGATaagat
Alignments
lowQualScore : 11111111111
lowQualScore : 2 3 22 2 2 2 2 2 55555 555555 2 2 2 1 44444444444 2 1 2 2 6 1 77 2 2 2 6 6 2 22 6 2
lowQualScore : . . .. . . . . . ..... ...... . . . . ........... . . . . . . .. . . . . . . .. . .
lowQualScore : 2 4 88 0 0 0 0 0 00000 888888 0 0 0 0 00000000000 0 2 0 0 0 6 11 0 0 0 0 0 0 99 7 2
consensus : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
Reference ( family-851 ) : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18291 : GCCAAC-TGCAAGTTCAG--C-T-G-GTGAGTTATA-T-C-----T------GTT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGT-TTTCT-C-T-AA-GACCG-A-GT--TTGA-GTG-AGAT
gi|18292 : GTCGAC-TGAAAGTTCAG--C-T-G-CTGAGTTATG-G-C-----T------GGT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TTGG-ATG-AGAT
gi|18293 : GCTGGC-TGCAAATTCAG--C-T-G-GTGAGTTATG-T-C-----T------GAT-GCT-GAGGACC--AAAC--C--------TCT-CGTCGAAT-T-TTCC-CAGGA-TTTCT-T-C-AA-GACTG-G-GG--TTGA-GTG-AGAT
gi|18294 : GCCGAC-TGGAAGTTCAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18295 : GCCGAC-TG-AAGT-CAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTGAAGAT
gi|18296 : GCCAAC-TGCAAGTTAGG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-TAGGACCC-ATAC--C--------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18297 : GCCGAC-TGGAAGTTCAT--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCG-AAAC--C--------TCA-AGTCGAAT-T-TCCT-CAGGG-TTTCT-C-C-AA-GACTG-C-GG--TTGG-GTG-AG
gi|18298 : GCCGAC-TGCAAGTTAAG--C-T-G-GTGAGTTATA-T-A-----T------GGT-GCT-GAGGACTC-GTAC--A--------TCT-CGTCGATT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18299 : GCGGAC-TGCAAGTTCAG--C-T-G-GTAAGTTATG-T-C-----T------AGT-GCT-GAGAACCC-AAAC--C--------TTT-CGTCGAAT-T-TCCT-CAGGT-TTTCT-C-G-AA-GACTG-A-
gi|18300 : GCCGAC-TGCAAGTTAAGAGC-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATACATC--------TCT-C-TCGAAT-T-TCCC-CACGT-TTTCT-TAC-AA-GACTG-A-GG--TT-G-TTG-AGAT
gi|18301 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18302 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18303 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18304 : GCCGCT-TGGAAATTCAG--T-T-G-GTGTGTGATG-T-T-----G------GGC-GCT-GAAGATCC-AAAC--C--------TCT-TCTCAAAT-C-TCCT-CAATA-TGTAT-C-C-GA-AACTC-G-GG--TTGG-GCA-AGGT
gi|18305 : GTCGACCTGCAAGTT-AA--C-TCG-GTTGATTATGGT-C-----T------GGTCGCTTGAGGACCC-ATAC--A--------TCTTCGTCGAAT-T---CC-CACGT-TTCCC-C-CCAA-GACTG-A-GGTTTTGG-TTG-AGAT
gi|18306 : GAC-TGCAAGTTTAG--C-T-G-GTGAGTTATG-T-C-----T------TGT-GCT-GAGGACCCAAAAC--CTCTCCGAGTCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TAGG-GTG-ATAT
gi|18307 : AC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-TATGTTT------GGT-GCT-GAGGACCC-AAAC--CAAACC---TAT-CGTTGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-TG--TTGG-ATG-GGAT
gi|18308 : -TGCAAGT-AAG--C-T-GCGTGAGTTATG-T-C-----TAGATCTGGT-GTT-GAGGGACC-ATAA-----------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCTCC-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18309 : AG--CAT-G-GTGAGTTATG-TAC-----T------GGT-GCT-GAGGACCC-ATACAGA--------TCT-CGTCGAATATGTCTC-TACGT-TAT-----C-AA-GACTG-AGGG--TTG
gi|18310 : --C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GGGGACCC-AAAG--C--------TCT-CGTCGAAT-T-ATCC-CAGGA-TTTCT-T-C-AA-GACTC-G-GG--TTGG-ATG-AGATaagat
blockSeqs : C C AG A C C G A ATGTT AGATCT C T A A CTCTCCGAG T G A G G G TA C A C G C G TT T A
blockSeqs : . C . . . . . . . . . . . A CAAACC . G . . G G TA . . . G C . . T .
blockSeqs : . C . . . . . . . . . . . A ATC . G . . G T TA . . . G C . . T .
blockSeqs : . C . . . . . . . . . . . A AGA . G . . . T A . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T C . G . . . C A . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . A C . G . . . G G . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T C . G . . . C G . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . A C . G . . . G T . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T C . C . . . C G . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T C . G . . . C T . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T A . G . . . C T . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . T C . G . . . C T . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . A C . G . . . A A . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . T C . G . . . C T . . . . . . . . .
blockSeqs : . C . . . . . . . . . . . A C . G . . . G A . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . A C . . . . . C T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . T A . . . . . C T . . . . . . . . .
blockSeqs : . . . . . . . . . . . T C . . . . . C T . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . G A . . . . . .
blockSeqCons :
originalCons : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
finalCons : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
Alignments
lowQualScore : 11111111111
lowQualScore : 2 3 22 2 2 2 2 2 55555 555555 2 2 2 1 44444444444 2 1 2 2 6 1 77 2 2 2 6 6 2 22 6 2
lowQualScore : . . .. . . . . . ..... ...... . . . . ........... . . . . . . .. . . . . . . .. . .
lowQualScore : 2 4 88 0 0 0 0 0 00000 888888 0 0 0 0 00000000000 0 2 0 0 0 6 11 0 0 0 0 0 0 99 7 2
consensus : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
Reference ( family-851 ) : GCCGAC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ANAC--C--------TCT-CGTCGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18291 : GCCAAC-TGCAAGTTCAG--C-T-G-GTGAGTTATA-T-C-----T------GTT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGT-TTTCT-C-T-AA-GACCG-A-GT--TTGA-GTG-AGAT
gi|18292 : GTCGAC-TGAAAGTTCAG--C-T-G-CTGAGTTATG-G-C-----T------GGT-GCT-GAGGACCC-AAAC--C--------TCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TTGG-ATG-AGAT
gi|18293 : GCTGGC-TGCAAATTCAG--C-T-G-GTGAGTTATG-T-C-----T------GAT-GCT-GAGGACC--AAAC--C--------TCT-CGTCGAAT-T-TTCC-CAGGA-TTTCT-T-C-AA-GACTG-G-GG--TTGA-GTG-AGAT
gi|18294 : GCCGAC-TGGAAGTTCAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18295 : GCCGAC-TG-AAGT-CAG--C-T-G-GTGAGTTAT--T-C-----T------GTT-GCT-GAGGATCC-AAAG--C--------TCT-TGTGGAAT-T-TCCC-CATAG-TTTCT-G-C-AA-GACTG-A-GG--TTGG-GTGAAGAT
gi|18296 : GCCAAC-TGCAAGTTAGG--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-TAGGACCC-ATAC--C--------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A-GG--TTGG-GTG-AGAT
gi|18297 : GCCGAC-TGGAAGTTCAT--C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCG-AAAC--C--------TCA-AGTCGAAT-T-TCCT-CAGGG-TTTCT-C-C-AA-GACTG-C-GG--TTGG-GTG-AG
gi|18298 : GCCGAC-TGCAAGTTAAG--C-T-G-GTGAGTTATA-T-A-----T------GGT-GCT-GAGGACTC-GTAC--A--------TCT-CGTCGATT-T-TTCC-CACGT-TTTCT-C-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18299 : GCGGAC-TGCAAGTTCAG--C-T-G-GTAAGTTATG-T-C-----T------AGT-GCT-GAGAACCC-AAAC--C--------TTT-CGTCGAAT-T-TCCT-CAGGT-TTTCT-C-G-AA-GACTG-A-
gi|18300 : GCCGAC-TGCAAGTTAAGAGC-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATACATC--------TCT-C-TCGAAT-T-TCCC-CACGT-TTTCT-TAC-AA-GACTG-A-GG--TT-G-TTG-AGAT
gi|18301 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18302 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18303 : GCCGAC-T-CAAGTTAAG--C-T-A-G-GAGTTATG-T-C-----T------GGT-GCT-GAGGACCC-ATAC--C--------TCT-C-TCGAAT-T-TTCCGCACGTATTTCT-C-C-AAGGACTGCA-GG--TGGGTGTG-AGAT
gi|18304 : GCCGCT-TGGAAATTCAG--T-T-G-GTGTGTGATG-T-T-----G------GGC-GCT-GAAGATCC-AAAC--C--------TCT-TCTCAAAT-C-TCCT-CAATA-TGTAT-C-C-GA-AACTC-G-GG--TTGG-GCA-AGGT
gi|18305 : GTCGACCTGCAAGTT-AA--C-TCG-GTTGATTATGGT-C-----T------GGTCGCTTGAGGACCC-ATAC--A--------TCTTCGTCGAAT-T---CC-CACGT-TTCCC-C-CCAA-GACTG-A-GGTTTTGG-TTG-AGAT
gi|18306 : GAC-TGCAAGTTTAG--C-T-G-GTGAGTTATG-T-C-----T------TGT-GCT-GAGGACCCAAAAC--CTCTCCGAGTCT-CGTCGAAT-T-TCCC-CAGGA-TTTCT-C-C-AA-GACTG-A-GG--TAGG-GTG-ATAT
gi|18307 : AC-TGCAAGTTCAG--C-T-G-GTGAGTTATG-T-TATGTTT------GGT-GCT-GAGGACCC-AAAC--CAAACC---TAT-CGTTGAAT-T-TCCC-CACGT-TTTCT-C-C-AA-GACTG-A-TG--TTGG-ATG-GGAT
gi|18308 : -TGCAAGT-AAG--C-T-GCGTGAGTTATG-T-C-----TAGATCTGGT-GTT-GAGGGACC-ATAA-----------TCT-CGTCGAAT-T-TTCC-CACGT-TTTCTCC-C-AA-GACTG-A--G--TTGG-TTG-AGAT
gi|18309 : AG--CAT-G-GTGAGTTATG-TAC-----T------GGT-GCT-GAGGACCC-ATACAGA--------TCT-CGTCGAATATGTCTC-TACGT-TAT-----C-AA-GACTG-AGGG--TTG
gi|18310 : --C-T-G-GTGAGTTATG-T-C-----T------GGT-GCT-GGGGACCC-AAAG--C--------TCT-CGTCGAAT-T-ATCC-CAGGA-TTTCT-T-C-AA-GACTC-G-GG--TTGG-ATG-AGATaagat