lowQualScore : 22 999999 1111
lowQualScore : 33 6 777777 2 6666 4444 2 2 6666666 5 2 333 2 2
lowQualScore : .. . ...... . .... .... . . ....... . . ... . .
lowQualScore : 00 0 000000 2 2222 5555 1 1 8888888 2 1 999 2 4
consensus : AGTATACAATAAAATTGTGCGAAGCGTC-GAGT---TT----GATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
Reference ( gi|32226 ) : AGTTCACAATAGA----CACGAAGCGTC-GAGT---AT----GATCTGA-TGAT-CCGCGCC-------TGTTAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32225 : AGTATACAATAAAATTGTGCAAAGCGTC-GAGT---TT----GATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32224 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGT---TT----GATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32223 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGT---TT----GATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32233 : acataagagCGAAGCGTT-GAGT---TT----GATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTA-GGATCA
gi|32234 : CGAAGCGTT-GAGT---TT----GATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTTAGGATCA
gi|32229 : CAAAGCGTC-GAGT---TT----GATCTGA-TGAT-CCACGCC-------TGTCAACGAGACACG-ATT---CAACTC-
gi|32232 : gCGAATTGT--GAGT---TT----GATCTGA-TGAT-CCGCACT-------TGTTATCGAGATGTG-ATT---CAACTC-CTT-GGATCA
gi|32231 : gCGAAGCGTCCGAGT---TT----GAT-TGA-TGA---CGCGCC-------TGTCAACGGGACGTG-TCT---CAACTC-TTC-GGATCA
gi|32230 : gCAAAACGTT-GAGTTTGATCTTTGATCTGA-TGAT-CCGCAAC-------TGTCAACAAGACGTA-ATC---CAACTC-TTT-GGATCA
gi|32227 : gCGAAGCGTC-GAGT---TT----GATCTGA-TGAT-TCGCGCC-------TGTCAAAGAGAC--A-AAC---AAATTCGTTT-GTATCA
gi|32228 : tgCGAAGTGTC-GAGT---TT----GATTTGA-TGAT-TCATGCC-------TGTCAATGTGACATA-AT
gi|32235 : tgAAGCGTC-TCAT---AT----GATCTGA-TGAT-CCGCGCC-------AGTCAACTCGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32237 : AGTGTC-GTGT---TT----GATCTGA-CGAT-CCACGTC-------TGTCAACGAGAAGTG-ATC---CAACTC-CTC-GGATCA
gi|32236 : AGCGTT-GAGT---TT----GATCTGA-TGAT-CCACGCCTGTCAAGTGTCAACGAGACGTG-ATCCAACAACTT-TTC-GGATCA
gi|32238 : GTGTC-TATT---GT----GAACTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32239 : GCGTC-TCGT---GT----GATCTGA-TGAT-CCGCGCC-------TGTCAACTCGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32240 : GCGTC-TCGT---GT----GATCTGA-TGAT-CCACGCC-------TGTCAACTTGACGTG-ATC---TGACTC-TTC-GGATCA
gi|32241 : CGTC-AAGT---TT----GATCTGAATGGTTCCATGTC-------TGTCAACGAGACGTGAATC---CAGCTC-TT--GGATCA
gi|32242 : T----GATCTGA-TGAT-CCG-GCC-------TGTCACTGAGACGTG-ATC---CGACTC-TTC-GAATCA
Alignments
lowQualScore : 3 2 6666666 2 2 6666666 2 333 2 2
lowQualScore : . . ....... . . ....... . ... . .
lowQualScore : 2 1 5555555 0 0 5555555 0 777 1 2
consensus : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
Reference ( family-848 ) : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32223 : AGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32224 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32225 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32226 : acataagagAGTTCACAATAGA----CACGAAGCGTC-GAGTATG-------ATCTGA-TGAT-CCGCGCC-------TGTTAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32227 : TGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-TCGCGCC-------TGTCAAAGAGAC--A-AAC---AAATTCGTTT-GTATCA
gi|32228 : TGCGAAGTGTC-GAGTTTG-------ATTTGA-TGAT-TCATGCC-------TGTCAATGTGACATA-AT
gi|32229 : GCAAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACGAGACACG-ATT---CAACTC-
gi|32230 : GCAAAACGTT-GAGTTTGATCTTTGATCTGA-TGAT-CCGCAAC-------TGTCAACAAGACGTA-ATC---CAACTC-TTT-GGATCA
gi|32231 : GCGAAGCGTCCGAGTTTG-------AT-TGA-TGA---CGCGCC-------TGTCAACGGGACGTG-TCT---CAACTC-TTC-GGATCA
gi|32232 : GCGAATTGT--GAGTTTG-------ATCTGA-TGAT-CCGCACT-------TGTTATCGAGATGTG-ATT---CAACTC-CTT-GGATCA
gi|32233 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTA-GGATCA
gi|32234 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTTAGGATCA
gi|32235 : AAGCGTC-TCATATG-------ATCTGA-TGAT-CCGCGCC-------AGTCAACTCGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32236 : AGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACGCCTGTCAAGTGTCAACGAGACGTG-ATCCAACAACTT-TTC-GGATCA
gi|32237 : AGTGTC-GTGTTTG-------ATCTGA-CGAT-CCACGTC-------TGTCAACGAGAAGTG-ATC---CAACTC-CTC-GGATCA
gi|32238 : GTGTC-TATTGTG-------AACTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32239 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACTCGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32240 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACTTGACGTG-ATC---TGACTC-TTC-GGATCA
gi|32241 : CGTC-AAGTTTG-------ATCTGAATGGTTCCATGTC-------TGTCAACGAGACGTGAATC---CAGCTC-TT--GGATCA
gi|32242 : TG-------ATCTGA-TGAT-CCG-GCC-------TGTCACTGAGACGTG-ATC---CGACTC-TTC-GAATCA
Alignments
lowQualScore : 3 2 6666666 2 2 6666666 2 333 2 2
lowQualScore : . . ....... . . ....... . ... . .
lowQualScore : 2 1 5555555 0 0 5555555 0 777 1 2
consensus : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
Reference ( family-848 ) : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32223 : AGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32224 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32225 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32226 : acataagagAGTTCACAATAGA----CACGAAGCGTC-GAGTATG-------ATCTGA-TGAT-CCGCGCC-------TGTTAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32227 : TGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-TCGCGCC-------TGTCAAAGAGAC--A-AAC---AAATTCGTTT-GTATCA
gi|32228 : TGCGAAGTGTC-GAGTTTG-------ATTTGA-TGAT-TCATGCC-------TGTCAATGTGACATA-AT
gi|32229 : GCAAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACGAGACACG-ATT---CAACTC-
gi|32230 : GCAAAACGTT-GAGTTTGATCTTTGATCTGA-TGAT-CCGCAAC-------TGTCAACAAGACGTA-ATC---CAACTC-TTT-GGATCA
gi|32231 : GCGAAGCGTCCGAGTTTG-------AT-TGA-TGA---CGCGCC-------TGTCAACGGGACGTG-TCT---CAACTC-TTC-GGATCA
gi|32232 : GCGAATTGT--GAGTTTG-------ATCTGA-TGAT-CCGCACT-------TGTTATCGAGATGTG-ATT---CAACTC-CTT-GGATCA
gi|32233 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTA-GGATCA
gi|32234 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTTAGGATCA
gi|32235 : AAGCGTC-TCATATG-------ATCTGA-TGAT-CCGCGCC-------AGTCAACTCGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32236 : AGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACGCCTGTCAAGTGTCAACGAGACGTG-ATCCAACAACTT-TTC-GGATCA
gi|32237 : AGTGTC-GTGTTTG-------ATCTGA-CGAT-CCACGTC-------TGTCAACGAGAAGTG-ATC---CAACTC-CTC-GGATCA
gi|32238 : GTGTC-TATTGTG-------AACTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32239 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACTCGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32240 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACTTGACGTG-ATC---TGACTC-TTC-GGATCA
gi|32241 : CGTC-AAGTTTG-------ATCTGAATGGTTCCATGTC-------TGTCAACGAGACGTGAATC---CAGCTC-TT--GGATCA
gi|32242 : TG-------ATCTGA-TGAT-CCG-GCC-------TGTCACTGAGACGTG-ATC---CGACTC-TTC-GAATCA
blockSeqs : A C ATCTTTG A T TGTCAAG A CAA G A
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blockSeqCons :
originalCons : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
finalCons : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
Alignments
lowQualScore : 3 2 6666666 2 2 6666666 2 333 2 2
lowQualScore : . . ....... . . ....... . ... . .
lowQualScore : 2 1 5555555 0 0 5555555 0 777 1 2
consensus : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
Reference ( family-848 ) : AGTATACAATAAAATTGTGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32223 : AGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32224 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32225 : acataagagAGTATACAATAAAATTGTGCAAAGCGTC-GAGTTTG-------ATCTGA-TCAT-CCGTGCA-------TTTCAACGAGACATA-ATA---CAACTC-TTC-GAATCA
gi|32226 : acataagagAGTTCACAATAGA----CACGAAGCGTC-GAGTATG-------ATCTGA-TGAT-CCGCGCC-------TGTTAACGAGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32227 : TGCGAAGCGTC-GAGTTTG-------ATCTGA-TGAT-TCGCGCC-------TGTCAAAGAGAC--A-AAC---AAATTCGTTT-GTATCA
gi|32228 : TGCGAAGTGTC-GAGTTTG-------ATTTGA-TGAT-TCATGCC-------TGTCAATGTGACATA-AT
gi|32229 : GCAAAGCGTC-GAGTTTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACGAGACACG-ATT---CAACTC-
gi|32230 : GCAAAACGTT-GAGTTTGATCTTTGATCTGA-TGAT-CCGCAAC-------TGTCAACAAGACGTA-ATC---CAACTC-TTT-GGATCA
gi|32231 : GCGAAGCGTCCGAGTTTG-------AT-TGA-TGA---CGCGCC-------TGTCAACGGGACGTG-TCT---CAACTC-TTC-GGATCA
gi|32232 : GCGAATTGT--GAGTTTG-------ATCTGA-TGAT-CCGCACT-------TGTTATCGAGATGTG-ATT---CAACTC-CTT-GGATCA
gi|32233 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTA-GGATCA
gi|32234 : CGAAGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACACC-------TGTCATCAAGACGTG-ATC---CAACTC-TTTAGGATCA
gi|32235 : AAGCGTC-TCATATG-------ATCTGA-TGAT-CCGCGCC-------AGTCAACTCGACGTG-ATC---CAACTC-TTC-GGATCA
gi|32236 : AGCGTT-GAGTTTG-------ATCTGA-TGAT-CCACGCCTGTCAAGTGTCAACGAGACGTG-ATCCAACAACTT-TTC-GGATCA
gi|32237 : AGTGTC-GTGTTTG-------ATCTGA-CGAT-CCACGTC-------TGTCAACGAGAAGTG-ATC---CAACTC-CTC-GGATCA
gi|32238 : GTGTC-TATTGTG-------AACTGA-TGAT-CCGCGCC-------TGTCAACGAGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32239 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCGCGCC-------TGTCAACTCGACGTG-ATC---CGACTC-TTC-GGATCA
gi|32240 : GCGTC-TCGTGTG-------ATCTGA-TGAT-CCACGCC-------TGTCAACTTGACGTG-ATC---TGACTC-TTC-GGATCA
gi|32241 : CGTC-AAGTTTG-------ATCTGAATGGTTCCATGTC-------TGTCAACGAGACGTGAATC---CAGCTC-TT--GGATCA
gi|32242 : TG-------ATCTGA-TGAT-CCG-GCC-------TGTCACTGAGACGTG-ATC---CGACTC-TTC-GAATCA