lowQualScore : 111111 111 1111111 1 111 11111111 1111 222 1 11111
lowQualScore : 3 000000 99999 88888 7777 000 3 7777777 3 1 3 6 3 2 2 555 333 2 2 888 22 22 77777777 55555 6 8888 2 2 2 22 999999 4 5 2 777 333 2 8 9 2 2 2 7777 3 3 8 6666 2 44 6666 555 11111 44
lowQualScore : . ...... ..... ..... .... ... . ....... . . . . . . . ... ... . . ... .. .. ........ ..... . .... . . . .. ...... . . . ... ... . . . . . . .... . . . .... . .. .... ... ..... ..
lowQualScore : 6 555555 11111 33333 1111 444 3 9999999 3 3 1 0 1 9 9 999 555 0 5 444 99 99 88888888 00000 3 9999 2 4 5 33 777777 1 7 7 333 333 5 8 4 4 4 5 1111 1 1 8 5555 8 22 5555 444 88888 22
consensus : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AC--TTACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TCCG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACGTAA-ATAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGNCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
Reference ( gi|102086 ) : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AC--GTACGTCAAAT-TACGTGTTGCATGCGTCACAA-TGAG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TCCG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACGTAA-AAAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAATA----TGCCAAA--TT----ACAATTAAATAGACAA---TTAGA-T-GA--TAATA
gi|102087 : TCAAATCGAT-GAC------AT-----CGTGTTTACCGTGGCTTG----GTT---AAAC-ATTTT--AC--TTACGTCAAAT-TACGTGTTGCCTGCGTCACAA-GGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TCCA-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACGTAA-AAAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102088 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AG--TTACGTCAAAT-TATGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTGC--GCA----TTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----T-CG-G-AAA---A------ACAGTCA-AACTGTTACACCTTG---AACGTGA-ATAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCTAAAA----TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-TAAA--TAAT
gi|102089 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TT------------------------C--TTACGTCAAAT-TACGTGGTGCCTGCGTCACAA-TGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TCCG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AATGTAA-AAAC-C-AA-AACC-ACCCAGGAATTA-AA-CAGTCAAAAA----TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102090 : TCAAATCTTT-GAT------AC-----CGTGTTTACT-----TTG----GCT---AAGC-ATTTT--ACTTGCACGTCAAAT-TACGTGTTGTCTGCGTCACAA-TGGG-AT-A-TTATTGC--GCA---TTTA-TGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TACG-G-AAAAGT-------TCAGTCA-AACTGTTACACCTTG---AACGTAA-ATAC-C-AA-AACC-TCCCAGA----A-AA-CAGTCAAAAA----TGTCAAA--TTACTAACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102091 : TCAAAGTGTTTGAC------AT-----CGTGTTTACT-----TTG----GTTTT-AAACCATTTTTAAC--TTACGTCAAAT-TACGCGTTTCTTGCGTCACAA-TGGG-AT-AAGTTTTGC--GCA---TTTAGCGTTGCG-A---T--G--TAACAGTT--------C-----T-TTA----TCCG-T-GAAAGTA------ACAGTCATAACTGTTTTCCCTTG---AACGTAA-AAAC-C-AA-AACC-TCGCAGG----A-AAACAGTCAAAAA----TGACAAA--TT----ACAATTAAATAGACAATTTTTAGGCT-AA--TAATA
gi|102092 : TCAAATCGTT-GAC------AT-----CGTGTTT-CT-----TT------CT---AAAC-ATTTT--CA--TTGCGTTAAAT-TACGTGTTGCCTGC-TCACCA-TGGG-AT-A-TTTT-GCTCGCA---CTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----A-TTG----TCCG-G--AAGGTA------ACA-TCA-AA-GGTTACACC--G---AGCGTAA-ATAC-C-TA-AACT-CTCCAGG----ACAA-CAGTCAAAAA----TGCC--A--TT----ACAATTAAATAACCAA---TTAG--T-AATTTAATA
gi|102093 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AC--TTACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----
gi|102094 : AAGCCGTT-GAC------ATGCGTGCGTGTTTACT-----TTG----GTTTTAAAAC-ATTTTT-AC--TTACGTCAAAT-TACGCGTTTCTTGCGTCATAA-TGGG-AT-A-GTTTTGC--GCA---TTTT-CGTTGCGCA---T--G--CAACAGTT--------C-----T-TTA----TCCG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACGTAA-AAAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102095 : ATCCTT-GACCATCGTAT-----TGTGTTTACT-----TTG-----TT---AAAC-ATTTT--AC--TTGCGTAAAATCTACGTGTTGCATGCGTT-CAACTGGGTAT-A-TTTCT-C--GCATCCTCCA-CGTTGCG-A---TCCG--CAACAGTT--------------T-TTA----TGCG-
gi|102096 : GTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AG--TTACGTCAAAT-TACGTGTTGGCTGCGTCACAA-TGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTA----TCGG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACATAA-ATAT-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102097 : GTT-GAC------AC-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--GC--TTACGTCAAAT-TACGCGTTACACGCGACTCAT-TGGG-AA-A-TTTTTGC--ACA---ATTA-CGGTGCGCA---T--G--TAACAGTT--------C-----A-TTA----TCCG-G-AAA
gi|102098 : GTTTGCT-----TTGTTTAGTT---AAAC-ATTTT--AC--TTACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-ATCA-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--GCACAACAGTT--------C-----T-ATATAAGTCAGTG-AAAGGTAT-----ACA
gi|102099 : AA-TGGG-AT-A-TTTTTGC--GCA---TTTA-CGTTGC
gi|102100 : -A-TTTTTGC--GCA---TTTA-CGTTGCGCA---T--G--TAACCGTT--------C-----T-TTA----TCCG-G-AAAGGTACATGTAACAGTCA-AACTGTTACACCTTG---AACATAA-ATAT-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
gi|102087 : TTTTG---GTT---TTTA-CGTT---CAAGGT--G--TAACAGTTTGA-----C-----TGTTACCTTTCTG-G-A----TA------A-AG----AACTGTTACA---TGCGCAACGTAA-ATGCGC-AA-AA
gi|102094 : tcaaatcgatgacatcgtgtttaccgtggcttggttaaacattttacttacgtcaaattacgtgttgcctgcgtcacaaggggatatTTTTG---GTT---TTTA-CGTT---CAAGGT--G--TAACAGTTTGA-----C-----TGTTACCTTTCCG-G-A----TA------A-AG----AACTGTTGCA---TGCGCAACGAAA-ATGCGC-AA-AACTATCCCAcctcccaggaaacagtcaaaaatgccaaattacaattaaatagacaattaggtaataata
gi|102088 : aagccgttgacatgcgtgcgtgtttactttggttttaaaacatttttacttacgtcaaattacgcgtttcttgcgtcataaTTTTG---GTA---TTCA-CGTT---CAAGGT--G--TAACAGTT--------TGACTGT-TTT----TCCG-ATAAAG-----------------AACTGTTACA---TGCGCAACGTAATGCGC-A-AA-AATA-TCCCAcctcccaggaaacagtcaaaaatgccaaattacaattaaatagacaattaggtaataata
gi|102089 : tcaaatcgttgacatcgtgtttactttggttaaacattttagttacgtcaaattatgtgttgcctgcgtcacaaTTTTG---GTT---TTTA-CATT---CAAGGT--G--TAACAGTTTGA-----C-----TGTTACCTTTCCG-G-A----TA------A-AG----AACTGTTACA---TGCGCAACGTAA-ATGCGCAAA-AATA-TCCCAcctcccaggaaacagtctaaaatgacaaattacaattaaatagacaattaggtaaataat
gi|102090 : tcaaatcgttgacatcgtgtttactttcttacgtcaaattacgtggtgcctgcgtcacaaTTTTG---GTA---TTTA-CGTT---CAAGGT--G--TAACAGTTTGACTGAAC-----T-TT-----TCCG-T-A----TA------A-AG----AACTGTTACA---TGCGCAACATAA-ATGCGC-AATAATA-TCCCAccacccaggaattaaacagtcaaaaatgccaaattacaattaaatagacaattaggtaataata
gi|102101 : tcaaatctttgataccgtgtttactttggctaagcattttacttgcacgtcaaattacgtgttgtctgcgtcacaa--GCA---TTTA-CGTTGCGCA---T--G--TAACAGTT--------C-----T-TTcctcccagaaaacagtcaaaaatgtcaaattactaacaattaaatagacaattaggtaataata
gi|102102 : AACAGTT--------C-----T-TTA----TCCG-G-AAAGGTA------ACAGTCA-AACTGTTACACCTTG---AACGTAA-ATAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----TGGCAAA--TT----ACTATTAAATAGACAA---TAAGG-T-AA--TAATA
gi|102103 : -AAAC-C-AA-AACC-TCCCAGG----A-AA-CAGTCAAAAA----AGCCAAA--TT----ACAATTACATATACAA---TTTGG-T-AA--TAATA
gi|102104 : C-C-AA-AACC-TCCGAGG----A-AA-CAGTCAAAAA----TGAAAAA--TT----AT-ATTTATTAGACAA---TTAGG-T-AA--TACTA
gi|102105 : -AA-CAGTCAAA-AGAGGTGCCAAAGATT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
Alignments
lowQualScore : 111111
lowQualScore : 3 999999 88888 77777 6666 999 3 77 44 3 2 2 2 2 33 444 2 33 33 6666 2 222222 3 2 6666 2 2 555 1 33 6666 555 2 2 33
lowQualScore : . ...... ..... ..... .... ... . .. .. . . . . . .. ... . .. .. .... . ...... . . .... . . ... . .. .... ... . . ..
lowQualScore : 3 666666 33333 77777 5555 666 1 33 22 1 9 9 7 7 77 444 5 77 77 1111 9 999999 6 8 5555 9 9 000 0 99 1111 000 9 9 99
consensus : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
Reference ( family-846 ) : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGNCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102086 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACGT--ACGTCAAAT-TACGTGTTGCATGCGTCACAA-TGAG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAATA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGA-T-GA--TAATA
gi|102087 : TCAAATCGAT-GAC------AT-----CGTGTTTACCGTGGCTTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-GGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCA-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102088 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TATGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TT-A-CGTTGCGCAT--G--TAACAGTTCTTTA----TC-G-GAAA---A------ACAGTCA-AACTGTTACACCTTGAACGTGAATACCAAAACCTCCCAGG----A-AA-CAGTCTAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-TAAA--TAAT
gi|102089 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TT------------------------CTT--ACGTCAAAT-TACGTGGTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAATGTAAAAACCAAAACCACCCAGGAATTA-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102090 : TCAAATCTTT-GAT------AC-----CGTGTTTACT-----TTG----GCT---AAGC-ATTTT--ACTTGCACGTCAAAT-TACGTGTTGTCTGCGTCACAA-TGGG-AT-A-TTATTG--CGCA---TTTA-TGTTGCGCAT--G--TAACAGTTCTTTA----TACG-GAAAAGT-------TCAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGA----A-AA-CAGTCAAAAA---TGTCAAA--TTACTAACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102091 : TCAAAGTGTTTGAC------AT-----CGTGTTTACT-----TTG----GTTTT-AAACCATTTTTAACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCACAA-TGGG-AT-AAGTTTTG--CGCA---TTTAGCGTTGCG-AT--G--TAACAGTTCTTTA----TCCG-TGAAAGTA------ACAGTCATAACTGTTTTCCCTTGAACGTAAAAACCAAAACCTCGCAGG----A-AAACAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAATTTTTAGGCT-AA--TAATA
gi|102092 : TCAAATCGTT-GAC------AT-----CGTGTTT-CT-----TT------CT---AAAC-ATTTT--CATT--GCGTTAAAT-TACGTGTTGCCTGC-TCACCA-TGGG-AT-A--TTTTGCTCGCA---CTTA-CGTTGCGCAT--G--TAACAGTTCATTG----TCCG-G-AAGGTA------ACA-TCA-AA-GGTTACACC--GAGCGTAAATACCTAAACTCTCCAGG----ACAA-CAGTCAAAAA---TGCC--A--TT----ACAATTAAATAACCAA---TTA-G-T-AATTTAATA
gi|102093 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTC
gi|102094 : AAGCCGTT-GAC------ATGCGTGCGTGTTTACT-----TTG----GTTTTAAAAC-ATTTTT-ACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCATAA-TGGG-AT-A-GTTTTG--CGCA---TTTT-CGTTGCGCAT--G--CAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102095 : ATCCTT-GACCATCGTAT-----TGTGTTTACT-----TTG-----TT---AAAC-ATTTT--ACTT--GCGTAAAATCTACGTGTTGCATGCGTT-CAACTGGGTAT-A-TTTCT---CGCATCCTCCA-CGTTGCG-ATCCG--CAACAGTT-TTTA----TGCG-
gi|102096 : GTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TACGTGTTGGCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCGG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102097 : GTT-GAC------AC-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--GCTT--ACGTCAAAT-TACGCGTTACACGCGACTCAT-TGGG-AA-A-TTTTTG--CACA---ATTA-CGGTGCGCAT--G--TAACAGTTCATTA----TCCG-GAAA
gi|102098 : GTTTGCT-----TTGTTTAGTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-ATCA-TTTTTG--CGCA---TTTA-CGTTGCGCAT--GCACAACAGTTCTATATAAGTCAGTGAAAGGTAT-----ACA
gi|102099 : AA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGC
gi|102100 : -A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACCGTTCTTTA----TCCG-GAAAGGTACATGTAACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
gi|102101 : GCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTT
gi|102102 : AACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGGCAAA--TT----ACTATTAAATAGACAA---TAAGG-T-AA--TAATA
gi|102103 : ACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---AGCCAAA--TT----ACAATTACATATACAA---TTTGG-T-AA--TAATA
gi|102104 : aaCCAAAACCTCCGAGG----A-AA-CAGTCAAAAA---TGAAAAA--TT----AT-ATTTATTAGACAA---TTAGG-T-AA--TACTA
gi|102105 : -AA-CAGTCAAAAGAGGTGCCAAAGATT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
Alignments
lowQualScore : 111111
lowQualScore : 3 999999 88888 77777 6666 999 3 77 44 3 2 2 2 2 33 444 2 33 33 6666 2 222222 3 1 6666 2 2 555 1 33 6666 555 2 2 33
lowQualScore : . ...... ..... ..... .... ... . .. .. . . . . . .. ... . .. .. .... . ...... . . .... . . ... . .. .... ... . . ..
lowQualScore : 3 666666 33333 77777 5555 666 1 33 22 1 9 9 7 7 77 444 5 77 77 1111 9 999999 6 0 5555 9 9 000 9 99 1111 000 9 9 99
consensus : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
Reference ( family-846 ) : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102086 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACGT--ACGTCAAAT-TACGTGTTGCATGCGTCACAA-TGAG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAATA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGA-T-GA--TAATA
gi|102087 : TCAAATCGAT-GAC------AT-----CGTGTTTACCGTGGCTTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-GGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCA-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102088 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TATGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA----TTA-CGTTGCGCAT--G--TAACAGTTCTTTA----T-CG-GAAA---A------ACAGTCA-AACTGTTACACCTTGAACGTGAATACCAAAACCTCCCAGG----A-AA-CAGTCTAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-TAAA--TAAT
gi|102089 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TT------------------------CTT--ACGTCAAAT-TACGTGGTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAATGTAAAAACCAAAACCACCCAGGAATTA-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102090 : TCAAATCTTT-GAT------AC-----CGTGTTTACT-----TTG----GCT---AAGC-ATTTT--ACTTGCACGTCAAAT-TACGTGTTGTCTGCGTCACAA-TGGG-AT-A-TTATTG--CGCA---TTTA-TGTTGCGCAT--G--TAACAGTTCTTTA----TACG-GAAAAGT-------TCAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGA----A-AA-CAGTCAAAAA---TGTCAAA--TTACTAACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102091 : TCAAAGTGTTTGAC------AT-----CGTGTTTACT-----TTG----GTTTT-AAACCATTTTTAACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCACAA-TGGG-AT-AAGTTTTG--CGCA---TTTAGCGTTGCG-AT--G--TAACAGTTCTTTA----TCCG-TGAAAGTA------ACAGTCATAACTGTTTTCCCTTGAACGTAAAAACCAAAACCTCGCAGG----A-AAACAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAATTTTTAGGCT-AA--TAATA
gi|102092 : TCAAATCGTT-GAC------AT-----CGTGTTT-CT-----TT------CT---AAAC-ATTTT--CATT--GCGTTAAAT-TACGTGTTGCCTGC-TCACCA-TGGG-AT-A--TTTTGCTCGCA---CTTA-CGTTGCGCAT--G--TAACAGTTCATTG----TCCG-G-AAGGTA------ACA-TCA-AA-GGTTACACC--GAGCGTAAATACCTAAACTCTCCAGG----ACAA-CAGTCAAAAA---TGCC--A--TT----ACAATTAAATAACCAA---TTA-G-T-AATTTAATA
gi|102093 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTC
gi|102094 : AAGCCGTT-GAC------ATGCGTGCGTGTTTACT-----TTG----GTTTTAAAAC-ATTTTT-ACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCATAA-TGGG-AT-A-GTTTTG--CGCA---TTTT-CGTTGCGCAT--G--CAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102095 : ATCCTT-GACCATCGTAT-----TGTGTTTACT-----TTG-----TT---AAAC-ATTTT--ACTT--GCGTAAAATCTACGTGTTGCATGCGTT-CAACTGGGTAT-A-TTTCT---CGCATCCTCCA-CGTTGCG-ATCCG--CAACAGTT-TTTA----TGCG-
gi|102096 : GTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TACGTGTTGGCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCGG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102097 : GTT-GAC------AC-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--GCTT--ACGTCAAAT-TACGCGTTACACGCGACTCAT-TGGG-AA-A-TTTTTG--CACA---ATTA-CGGTGCGCAT--G--TAACAGTTCATTA----TCCG-GAAA
gi|102098 : GTTTGCT-----TTGTTTAGTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-ATCA-TTTTTG--CGCA---TTTA-CGTTGCGCAT--GCACAACAGTTCTATATAAGTCAGTGAAAGGTAT-----ACA
gi|102099 : AA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGC
gi|102100 : -A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACCGTTCTTTA----TCCG-GAAAGGTACATGTAACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
gi|102101 : GCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTT
gi|102102 : AACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGGCAAA--TT----ACTATTAAATAGACAA---TAAGG-T-AA--TAATA
gi|102103 : AAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---AGCCAAA--TT----ACAATTACATATACAA---TTTGG-T-AA--TAATA
gi|102104 : CCAAAACCTCCGAGG----A-AA-CAGTCAAAAA---TGAAAAA--TT----AT-ATTTATTAGACAA---TTAGG-T-AA--TACTA
gi|102105 : -AA-CAGTCAAAAGAGGTGCCAAAGATT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
blockSeqs : T CATCGT GCGTG GTGGC TTTA TTA C TA GC C C T C A CT TCC G CC CA TAAG T CATGTA T A AATT C A AGG C GA ACTA TTT C A TT
blockSeqs : . . . . . TT . T . . . . . . . . . . . . . T . T . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . A . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . A . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . A . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
finalCons : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
Alignments
lowQualScore : 111111
lowQualScore : 3 999999 88888 77777 6666 999 3 77 44 3 2 2 2 2 33 444 2 33 33 6666 2 222222 3 1 6666 2 2 555 1 33 6666 555 2 2 33
lowQualScore : . ...... ..... ..... .... ... . .. .. . . . . . .. ... . .. .. .... . ...... . . .... . . ... . .. .... ... . . ..
lowQualScore : 3 666666 33333 77777 5555 666 1 33 22 1 9 9 7 7 77 444 5 77 77 1111 9 999999 6 0 5555 9 9 000 9 99 1111 000 9 9 99
consensus : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
Reference ( family-846 ) : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAANACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102086 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACGT--ACGTCAAAT-TACGTGTTGCATGCGTCACAA-TGAG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAATA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGA-T-GA--TAATA
gi|102087 : TCAAATCGAT-GAC------AT-----CGTGTTTACCGTGGCTTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-GGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCA-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102088 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TATGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA----TTA-CGTTGCGCAT--G--TAACAGTTCTTTA----T-CG-GAAA---A------ACAGTCA-AACTGTTACACCTTGAACGTGAATACCAAAACCTCCCAGG----A-AA-CAGTCTAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-TAAA--TAAT
gi|102089 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TT------------------------CTT--ACGTCAAAT-TACGTGGTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAATGTAAAAACCAAAACCACCCAGGAATTA-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102090 : TCAAATCTTT-GAT------AC-----CGTGTTTACT-----TTG----GCT---AAGC-ATTTT--ACTTGCACGTCAAAT-TACGTGTTGTCTGCGTCACAA-TGGG-AT-A-TTATTG--CGCA---TTTA-TGTTGCGCAT--G--TAACAGTTCTTTA----TACG-GAAAAGT-------TCAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGA----A-AA-CAGTCAAAAA---TGTCAAA--TTACTAACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102091 : TCAAAGTGTTTGAC------AT-----CGTGTTTACT-----TTG----GTTTT-AAACCATTTTTAACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCACAA-TGGG-AT-AAGTTTTG--CGCA---TTTAGCGTTGCG-AT--G--TAACAGTTCTTTA----TCCG-TGAAAGTA------ACAGTCATAACTGTTTTCCCTTGAACGTAAAAACCAAAACCTCGCAGG----A-AAACAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAATTTTTAGGCT-AA--TAATA
gi|102092 : TCAAATCGTT-GAC------AT-----CGTGTTT-CT-----TT------CT---AAAC-ATTTT--CATT--GCGTTAAAT-TACGTGTTGCCTGC-TCACCA-TGGG-AT-A--TTTTGCTCGCA---CTTA-CGTTGCGCAT--G--TAACAGTTCATTG----TCCG-G-AAGGTA------ACA-TCA-AA-GGTTACACC--GAGCGTAAATACCTAAACTCTCCAGG----ACAA-CAGTCAAAAA---TGCC--A--TT----ACAATTAAATAACCAA---TTA-G-T-AATTTAATA
gi|102093 : TCAAATCGTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTC
gi|102094 : AAGCCGTT-GAC------ATGCGTGCGTGTTTACT-----TTG----GTTTTAAAAC-ATTTTT-ACTT--ACGTCAAAT-TACGCGTTTCTTGCGTCATAA-TGGG-AT-A-GTTTTG--CGCA---TTTT-CGTTGCGCAT--G--CAACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAAAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGCCAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102095 : ATCCTT-GACCATCGTAT-----TGTGTTTACT-----TTG-----TT---AAAC-ATTTT--ACTT--GCGTAAAATCTACGTGTTGCATGCGTT-CAACTGGGTAT-A-TTTCT---CGCATCCTCCA-CGTTGCG-ATCCG--CAACAGTT-TTTA----TGCG-
gi|102096 : GTT-GAC------AT-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--AGTT--ACGTCAAAT-TACGTGTTGGCTGCGTCACAA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTTA----TCGG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAATA
gi|102097 : GTT-GAC------AC-----CGTGTTTACT-----TTG----GTT---AAAC-ATTTT--GCTT--ACGTCAAAT-TACGCGTTACACGCGACTCAT-TGGG-AA-A-TTTTTG--CACA---ATTA-CGGTGCGCAT--G--TAACAGTTCATTA----TCCG-GAAA
gi|102098 : GTTTGCT-----TTGTTTAGTT---AAAC-ATTTT--ACTT--ACGTCAAAT-TACGTGTTGCCTGCGTCACAA-TGGG-ATCA-TTTTTG--CGCA---TTTA-CGTTGCGCAT--GCACAACAGTTCTATATAAGTCAGTGAAAGGTAT-----ACA
gi|102099 : AA-TGGG-AT-A-TTTTTG--CGCA---TTTA-CGTTGC
gi|102100 : -A-TTTTTG--CGCA---TTTA-CGTTGCGCAT--G--TAACCGTTCTTTA----TCCG-GAAAGGTACATGTAACAGTCA-AACTGTTACACCTTGAACATAAATATCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGACAAA--TT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA
gi|102101 : GCA---TTTA-CGTTGCGCAT--G--TAACAGTTCTTT
gi|102102 : AACAGTTCTTTA----TCCG-GAAAGGTA------ACAGTCA-AACTGTTACACCTTGAACGTAAATACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---TGGCAAA--TT----ACTATTAAATAGACAA---TAAGG-T-AA--TAATA
gi|102103 : AAACCAAAACCTCCCAGG----A-AA-CAGTCAAAAA---AGCCAAA--TT----ACAATTACATATACAA---TTTGG-T-AA--TAATA
gi|102104 : CCAAAACCTCCGAGG----A-AA-CAGTCAAAAA---TGAAAAA--TT----AT-ATTTATTAGACAA---TTAGG-T-AA--TACTA
gi|102105 : -AA-CAGTCAAAAGAGGTGCCAAAGATT----ACAATTAAATAGACAA---TTAGG-T-AA--TAA