lowQualScore : 1 4 2 1 4 4444 4 55 2 2 11111 11111111 11111 11111 11 1 1 11 11 77777777
lowQualScore : 7 0 3 7 6 0 7 8888 6 0 7 00 7 3 3 8 0 0 6 0 88888 77777777 5 7 55 3 44 77777777 33 55 33333 5555 33 2 0 2 444 2 444 2 33333 4444 5 99 33 33 5 2 1 2 1 2 2 5 2 2 5 2 2 0 5 2 99 5 33 2 2 7 77777777 2 33 2 3 3 44
lowQualScore : . . . . . . . .... . . . .. . . . . . . . . ..... ........ . . .. . .. ........ .. .. ..... .... .. . . . ... . ... . ..... .... . .. .. .. . . . . . . . . . . . . . . . . .. . .. . . . ........ . .. . . . ..
lowQualScore : 3 0 7 0 7 0 3 3333 7 0 3 00 3 7 7 0 8 8 0 8 88888 88888888 0 6 00 6 66 77777777 77 99 44444 3333 77 7 7 7 777 5 444 5 11111 8888 0 66 77 77 3 7 8 7 9 7 7 3 7 7 3 5 5 0 0 5 66 0 22 5 5 4 77777777 9 99 9 1 1 22
consensus : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCC-G-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAA-TTAATTT-CTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT-TTATATATATATATA--TTTACTATATATTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T---CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---T-GTAAC-----AAAAAA--GGCCA-AAAAT--A--C-ACA-CCTTGAC-TGCTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TTGT-AAAATTT-CA-CCTGAC-ATCAATATTTTGCAGA------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Reference ( gi|21029 ) : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGGAAAATTACAACGATCGTCAAAATTTATCCAAAATGCTTCATACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGATTCCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC--G-TGATCGGATCAATGTCATGACTCAGGGAATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATA--GATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT-TTATATATATATATA--TT-ACTATATATTCCA-CAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T---CTTCC--TTGAAA--TATTTAG-AATAGC-ACC---T-TA---T-GTAAC-----AAAAGA--GGCCACGAAAT--A--C-ACA-CCATGAC-TGCTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-ATGT-AAAATTT-GA-CCTGAC-ATCAATATCTTGCATATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21026 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCACG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTT-CTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT-TTATATATATATATA--TTTACTATATATTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-----CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---T-GTAAC-----AAAAGA--G-CCACGAAAT--A--C-ACA-CCATGAC-TGCTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-ATGT-AAAATTT-GA-CCTGAC-ATCAATATCTTGCATATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21027 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAG-AAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCC-GCTGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAA-TTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT-TTATATATATATATA--TTTACTATATATTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAG-ATTGTTT-----CTTCC--T--GAA--TATT-AG-AATAGC-ACC---T-TA---T-GTAAC-----AAAAGA--G-CCACGAAAT--A--C-ACA-CCATGAC-TGCTTAC-T-TT-C-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-ATGT-AAAATTT-GA-CCTGAC-ATCAATATCTTGCATATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21028 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCAT-ATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGC--ATAGAACATCAGCC-G-TGATCG-ATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAA-TATATTGGTTAACAATATCAATAA-GATCTTTAAACATTAACCCAAAT-GTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAA-TTAATTT-CTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT-TTAT-TATATATATAATTT-ACTATA-ATTCCA-CAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-----CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---T-GTAAC-----AAAAGA--G-CCACGAAAT--A--C-ACA-CCATGAC-TGCTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-ATGT-AAAATTT-GA-CCTGAC-ATCAATATCTTGCATATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21030 : TTAAATATATTTCATAAATA---A--TT-GTTATA------A-CA----TTAAAAATT--AAGATAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AGAGTATAGTTT-C---TTTCC--TTGAAA--TCTTAAA-AATAAC-ACCTCTT-TA---T-ATA
gi|21031 : tacttgcaaaatcaAAATAT-T-ATATA-ACATATA--T--ACGACAGATTT------AGTTTTAAGCTTTTAAGGTAT-GT--CCCTATTCGACAAA---A----TGT--TGTTT--AAA-CA-----------CTTC------AGA--TATTTAG-AATAAT-ACC---T-TA---TGGTAAC-----AAAAAA--GGCC---AGAT--A--CAACA-CCTTGAC-TGTTTAC-T-TTTCTTGA-CTAGAATC-TCAAGAA-GACA-TAT-ACCCCC-TTCTA-TCATTTGT-AAAATTT-CA-CCTGAC-ATCAATATTTTCCCGA------TATCAACACAA-AAG--GAA-AG-C-A--AAATAGTTT
gi|21032 : AAATTAA-ATTT--AAGGTATTGTTTCCCTACTCGACAAACAAA----CTTCTTGTTTT-AAAGTATTGTTTCT---CTTCC--TTGAAA--TATTTAGGAATAAC-AC------TA---T-GTAAC-----AAAA-A--GGCAA--AAATTCA--CCACAGCCTTGACGTGTTTAC-T-TTTCCTGA-CTAGA-TCGCCAAGAAAGACA--AT-A-CCCC-TTCTA-TCATTTGT-AAAATTC--A-CCCGAC-ATCGATATTTTGCA-AT-CAT---TCAACACAA-TAG--GAAGAG-C-AAGAAATAATTT
gi|21033 : aACACTT--AAGGTAT-GC--CCCTACTCGACAAA---A----TTT--TGTTT--
gi|21034 : CTT--AAGGTAG-GT--CCCTACTCGACAAA---G----TTT--TGTTT--AAAGTATTGTTT-T---CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---G-GTAAC-----AAAAAA--GGCCAAAAAAT--A--C-ACA-CCTTGAC-TGTTTAC-T-TTTC-TGA-CTAGAATA-TCGAGAA-GACA-CAT-A-CCCCTTTCTA-CCA-TTTT-ACAATTT-CA-CCTGAT-ATTAATATTTTGCAGA------TATCAACACAT-TAG--GAA-A
gi|21035 : TT--AAGGTAG-GC--CCCTACTCGACAAA---A----TTT--CGTGT--AAAGTATTGTTT-T---CTTCC--TTGAAA--TATTTAG-AATAAC-ATC---T-TA---T-GTAACA----AAAAAA--AGCCA-AAAAT--A--C-ACA-TCTTGAC-TGTTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAA-C-CCCC-TTTTA-TCGTTTGT-AAAATTT-CA-CCTGAC-ATCAATATTTTGCAGA------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21036 : TT--ATGGTAG-G---CCCTACTCAACAAA---G----TTT--CGTTT--AAAGTATTGTTT-T---CTTCC--TTGAAA--TATTAAG-AATGAC-ACC---T-CA---T-GTAAC-----AAAAAT--GGCCAAAAAAT--A--C-ACA-CCTTGAC-TGTTTAC-T-TTTC-TGA-CTAGAATC-TCAA-AA-GACATTAT-A-CCCA--TCTA-TCA-TTGCAAAAATTT-CA-CCTGACAATCAATAT-TTGCA-------ATATCAACACAA-TAG--GAA-AG-A-A--AAATAATTT
gi|21037 : TT--AAGGAAG-GT--CCCTATTCGACAAC---A----TTT--TGTTT--AAAATATTGTTT-T---CTTCC--ATGAGA--TATTTAG-AATAAC-ACT---T-TA---T-TTAAC-----AAAAAA--
gi|21038 : T--CTCTACTCGACAAA---A----TGT--TGCTT--AAAGTATTGTTT-T---CTTCC--TTTAAA--TATTTAG-AATAAC-ACC---T-TA---T-GTAAC-----AAA--A--GGCCAACAAAT--A--C-ACA-CCTTGAT-TGTTTAC-T-TTTC-TGA-CTAGAATC-TCAAGAA-GACA-CAT-ACCCCC-TTCTA-ATA-TTGT-AAAATTT-CA-CCTGAC-ATCGATATTTTGCAGA------TATCAACAAGA-TAG--GAA-TG-C-A--AAATAATTT
gi|21039 : TTGACAAA--------TTT--TGTTT--AAAGTGTTGTTT-TG--CTTCC--TTGAAA--TATTTAG-AATAACCACC---TGTAGGAC-GTAAC-----AAAAG-----CCA-AAAAT--A--C-ACA-CCTTGAC-TGTTTACGTGTTTC-TGAACT-GATTC----AGAA-GACA-TAT-A-CCCC-TTTTA-TCC-TTGTAAAAATTT-CA-CCT-AC-ATCAATATTTTGCAGA------TATCAACACAA-TAG----A-AG-CAA--AAATAATTT
gi|21040 : GACAAA---ACTTTTTT--TGTTTTAAAGGTATTGTTT-T---CTTC---TTGAAA--TATTTAG-AAAAAC-ACC---T-TA---T-GTAAC-----AAAAAA--GGCCACAAAAT--A--C-ACA-CCTTGAC-TGTTTAC---TTTC-TGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-CTTTATTCC-TTGT-AAAATTT-CA-CCTGAC-ATCAATATTTTGCAGA------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21041 : --TGTCT--AAATCATTGTAT-TGACCTTCA----AAAA--CAGCAAT-AATTGT-A-----T-AA---T-GTAACCAAAAAAAAAA--GGCCAAACAAT--A--T-ACA-CCTTGAC-TACTTAC-T-TTTC-TGA-CTCCCAAC-TGAA-AA-GATA-TAT-G-CCCC-TTCTA-TCA-TTGT-ACAATTT-CA-TCCGAC-ATCAATA
gi|21042 : --AAAGTACAGTTT-T---TTTCCACTTGAAAATCATTT-G-ACTAGC-CCA---T-TT---T-GTAACTTT--AAAAAA--A-CCA-----T--A--C-AAA-TCTTGAC-TGCTTAC-C-TTTC-TGA-CCAGAATC-TCCAGAA-GACA-TGTAA-CCCC-TTCTT-TCA-TCAC-ACAATTTCAA-CC--AA-ATCAATA
gi|21043 : -TA---T-GTAAC-----AAAAAG--GGCCCTAAAAT--ATAC-ACA-CCTTGAC-TGCTTAT-T-TTTC-TGT-CTAGAATC-TCAAGAA-GACA-TAT-ACCCCC-TTCTA-TCA-TTAT-ATAATTT-AA-TCTGAC-ATCAGTATTTTGCAGA------TATCAACACAT-TAG--AAA-AG-C-G--AAATAATTT
gi|21044 : TAAC-----AAAAAAAAGGCCAAAAAAT--A--C-ACA-CCTTGAC-TG-TTAC-C-TTTT-TGA-CTGGAATC-TCAAGAAGGACA-TAT-ACCCCC-TTTTA-TCC-TTGT-TAAATTT-CACCCTGAC-ATCATCAT-TTGCA-------ATATCAACACAACTAGACGAA-AGAC-A--AA
gi|21045 : -TAT-A-CCCCCTTCTA-TCA-TTGT-AAAATTT-CA-CTTGAC-ATCAATATTTTGCAGAT-T-----TCAGCACAG-TAG--GAA-AT-C-A--AAATCAT
Alignments
lowQualScore : 1 2 1 11 1 1 11 2 2 1111 11111 111 333333
lowQualScore : 3 0 0 2 0 3 22 0 2 0 3 22 3 0 0 0 8 3 4444 777 2 3 1 44 3 44 66666666 33 55 2 2 33 1 33 5 5 444 2 444 2 22222 666 88 333 2 5 33 2 2 2 2 1 444 2 2 2 2 5 2 2 4 9 2 4 2 4 2 2 888 000000 2 33 2 2 2 33
lowQualScore : . . . . . . .. . . . . .. . . . . . . .... ... . . . .. . .. ........ .. .. . . .. . .. . . ... . ... . ..... ... .. ... . . .. . . . . . ... . . . . . . . . . . . . . . . ... ...... . .. . . . ..
lowQualScore : 2 0 0 5 0 2 55 0 5 0 2 55 2 0 0 8 0 2 2222 333 5 0 0 66 3 22 66666666 44 66 5 5 44 7 44 0 0 444 4 111 2 44444 222 44 888 5 0 44 5 5 5 5 1 000 5 5 5 5 0 4 4 7 4 4 7 4 7 4 4 111 777777 7 77 7 9 9 99
consensus : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-ATATATATATATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Reference ( family-837 ) : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-ATATATATATATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21026 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCACG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-ATATATATATATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21027 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAA-TTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CGCTGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-ATATATATATATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAG-ATTG-TT-T-CTTCC--T--GAA--TA-TTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21028 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCAT-ATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGC--ATAGAACATCAGC-CG-TGATCG-ATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAA-TATATTGGTTAACAATATCAATAA-GATCTTTAAACATTAACCCAAAT-GTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATTATATATATA-ATTTACTATA-A----TTCCA-CAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT---CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21029 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGGAAAATTACAACGATCGTCAAAATTTATCCAAAATGCTTCATACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGATTCCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC--G-TGATCGGATCAATGTCATGACTCAGGGAATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATA--GATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-ATATATATATA-TTACTATATA----TTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA--GGCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21030 : TAAATATATTTCATAAATAATTGTTATAACA----TTAAAAATT--AAGATAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AGAGTATAGTTT-C-TTTCC--TTGAAA--TCTTAAA-AATAAC-ACCTCTT-TA---TA-TA
gi|21031 : tacttgcaaaatcatAAATATT-AT-ATA-ACATATAT--ACGACAGA----TTT------AGTTTTAAGCTTTTAAGGTAT-GT--CCCTATTCGACAAA---A----TGT--TGTTT--AAA-CA---------CTTC------AGA--TATTTAG-AATAAT-ACC---T-TA---TGGTAAC-----AAAAAA--GGCC--A-G-A----T--AC-AACA-CCTTGAC-TGTTTAC-T-TTTC-TTGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TTTGT-AAAATTTCA-CCTGAC-ATCAATATTTTCCCG--A------TATCAACACAA-AAG--GAA-AG-C-A--AAATAGTTT
gi|21032 : AAATT-AAATTT--AAGGTATTGTTTCCCTACTCGACAAACAAA----CTTCTTGTTTT-AAAGTATTGTTTCT-CTTCC--TTGAAA--TATTTAGGAATAAC-AC------TA---TG-TAAC-----AAAAAG--G--C--A-A-A-A-ATTCACCA-CAGCCTTGACGTGTTTAC-T-TTTCCT-GA-CTAGA-TCGCCAAGAAAGACA--AT-A-CCCC-TTCTA-TCATTT-GT-AAAA-TTCA-CCCGAC-ATCGATATTTTGCAATCA------T-TCAACACAA-TAG--GAAGAG-C-AAGAAATAATTT
gi|21033 : aACACTT--AAGGTAT-GC--CCCTACTCGACAAA---A----TTT--TGTTT--
gi|21034 : CTT--AAGGTAG-GT--CCCTACTCGACAAA---G----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---GG-TAAC-----AAAAAA--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATA-TCGAGAA-GACA-CAT-A-CCCCTTTCTA-CCA-TT-TT-ACAATTTCA-CCTGAT-ATTAATATTTTGCAG--A------TATCAACACAT-TAG--GAA-A
gi|21035 : TT--AAGGTAG-GC--CCCTACTCGACAAA---A----TTT--CGTGT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ATC---T-TA---TG-TAACA----AAAAAA--AGCC--A-A-A-A-AT--AC-A-CA-TCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAA-C-CCCC-TTTTA-TCGTTT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21036 : TT--ATGGTAG-G---CCCTACTCAACAAA---G----TTT--CGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTAAG-AATGAC-ACC---T-CA---TG-TAAC-----AAAAAT--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAA-AA-GACATTAT-A-CCCA--TCTA-TCA-TT-GCAAAAATTTCA-CCTGACAATCAATA-TTTGCA---A------TATCAACACAA-TAG--GAA-AG-A-A--AAATAATTT
gi|21037 : TT--AAGGAAG-GT--CCCTATTCGACAAC---A----TTT--TGTTT--AAAATATTGTTT-T-CTTCC--ATGAGA--TATTTAG-AATAAC-ACT---T-TA---TT-TAAC-----AAAAAA--
gi|21038 : T--CTCTACTCGACAAA---A----TGT--TGCTT--AAAGTATTGTTT-T-CTTCC--TTTAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-------AAAA--GGCC--A-ACA-A-AT--AC-A-CA-CCTTGAT-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-CAT-ACCCCC-TTCTA-ATA-TT-GT-AAAATTTCA-CCTGAC-ATCGATATTTTGCAG--A------TATCAACAAGA-TAG--GAA-TG-C-A--AAATAATTT
gi|21039 : TTGACAAA--------TTT--TGTTT--AAAGTGTTGTTT-TGCTTCC--TTGAAA--TATTTAG-AATAACCACC---TGTAGGACG-TAAC-----AAAA-----GCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTACGTGTTTC-T-GAACT-GATTC----AGAA-GACA-TAT-A-CCCC-TTTTA-TCC-TT-GTAAAAATTTCA-CCT-AC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG----A-AG-CAA--AAATAATTT
gi|21040 : GACAAA---ACTTTTTT--TGTTTTAAAGGTATTGTTT-T-CTT-C--TTGAAA--TATTTAG-AAAAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--ACA-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-CTTTATTCC-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21041 : --TGTCT--AAATCATTGTAT-T-GA-CC--TTCAAA--AAC--AGCAATAATTGTA---T-AA---TG-TAACCAAAAAAAAAA--GGCC--A-A-ACA-AT--AT-A-CA-CCTTGAC-TACTTAC-T-TTTC-T-GA-CTCCCAAC-TGAA-AA-GATA-TAT-G-CCCC-TTCTA-TCA-TT-GT-ACAATTTCA-TCCGAC-ATCAATA
gi|21042 : --AAAGTACAGTTT-T-TTTCCACTTGAAAATCATTT-G-ACTAGC-CCA---T-TT---TG-TAACTTT--AAAAAA--A-CC--A--------T--AC-A-AA-TCTTGAC-TGCTTAC-C-TTTC-T-GA-CCAGAATC-TCCAGAA-GACA-TGTAA-CCCC-TTCTT-TCA-TC-AC-ACAATTTCA-ACCAA--ATCAATA
gi|21043 : -TA---TG-TAAC-----AAAAAG--GGCCCTA-A-A-ATAT--AC-A-CA-CCTTGAC-TGCTTAT-T-TTTC-T-GT-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TT-AT-ATAATTTAA-TCTGAC-ATCAGTATTTTGCAG--A------TATCAACACAT-TAG--AAA-AG-C-G--AAATAATTT
gi|21044 : -TAAC-----AAAAAAAAGGCC--A-A-A-AAAT--AC-A-CA-CCTTGAC-TG-TTAC-C-TTTT-T-GA-CTGGAATC-TCAAGAAGGACA-TAT-ACCCCC-TTTTA-TCC-TT-GT-TAAATTTCACCCTGAC-ATCATCA-TTTGCA---A------TATCAACACAACTAGACGAA-AGAC-A--AA
gi|21045 : -TAT-A-CCCCCTTCTA-TCA-TT-GT-AAAATTTCA-CTTGAC-ATCAATATTTTGCAG--A------TTTCAGCACAG-TAG--GAA-AT-C-A--AAATCAT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 1111 11 11111 111 333333
lowQualScore : 3 0 5 2 0 3 22 0 2 0 3 66 3 5 5 0 0 6 3 4444 22 2 3 1 44 3 44 66666666 33 55 1 2 2 33 1 33 5 5 444 2 444 2 22222 666 88 333 2 5 33 2 2 2 2 1 444 2 2 2 2 5 2 2 4 9 2 4 2 4 2 2 888 000000 2 33 2 2 2 33
lowQualScore : . . . . . . .. . . . . .. . . . . . . . .... .. . . . .. . .. ........ .. .. . . . .. . .. . . ... . ... . ..... ... .. ... . . .. . . . . . ... . . . . . . . . . . . . . . . ... ...... . .. . . . ..
lowQualScore : 2 0 5 5 0 2 55 0 5 0 2 55 2 5 5 8 8 7 2 2222 33 5 0 0 66 3 22 66666666 44 66 7 5 5 44 7 44 0 0 444 4 111 2 44444 222 44 888 5 0 44 5 5 5 5 1 000 5 5 5 5 0 4 4 7 4 4 7 4 7 4 4 111 777777 7 77 7 9 9 99
consensus : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Reference ( family-837 ) : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21026 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCACG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21027 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAA-TTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CGCTGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAG-ATTG-TT-T-CTTCC--T--GAA--TA-TTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21028 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCAT-ATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGC--ATAGAACATCAGC-CG-TGATC-GATCAATGTCATGACTCAGG-AATCTGAAGGCTGAC-AAATATATTGGTTAACAATATCAAT-AAGATCTTTAAACATTAACCCAAA-TGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-TATATATATAATTTACTATA-A----TTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21029 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGGAAAATTACAACGATCGTCAAAATTTATCCAAAATGCTTCATACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGATTCCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC--G-TGATCGGATCAATGTCATGACTCAGGGAATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATA--GATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-A-TTACTATATA----TTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA--GGCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21030 : TAAATAT-ATTTCATAAATAATTGTTATAACA----TTAAAAATT--AAGATAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AGAGTATAGTTT-C-TTTCC--TTGAAA--TCTTAAA-AATAAC-ACCTCTT-TA---TA-TA
gi|21031 : tacttgcaaaatcatAAATATT-ATATA-ACATAT-AT--ACGACAGA----TTT------AGTTTTAAGCTTTTAAGGTAT-GT--CCCTATTCGACAAA---A----TGT--TGTTT--AAA-CA---------CTTC------AGA--TATTTAG-AATAAT-ACC---T-TA---TGGTAAC-----AAAAAA--GGCC--A-G-A----T--AC-AACA-CCTTGAC-TGTTTAC-T-TTTC-TTGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TTTGT-AAAATTTCA-CCTGAC-ATCAATATTTTCCCG--A------TATCAACACAA-AAG--GAA-AG-C-A--AAATAGTTT
gi|21032 : AAATT-AAATTT--AAGGTATTGTTTCCCTACTCGACAAACAAA----CTTCTTGTTTT-AAAGTATTGTTTCT-CTTCC--TTGAAA--TATTTAGGAATAAC-AC------TA---TG-TAAC-----AAAAAG--G--C--A-A-A-A-ATTCACCA-CAGCCTTGACGTGTTTAC-T-TTTCCT-GA-CTAGA-TCGCCAAGAAAGACA--AT-A-CCCC-TTCTA-TCATTT-GT-AAAA-TTCA-CCCGAC-ATCGATATTTTGCAATCA------T-TCAACACAA-TAG--GAAGAG-C-AAGAAATAATTT
gi|21033 : aACACTT--AAGGTAT-GC--CCCTACTCGACAAA---A----TTT--TGTTT--
gi|21034 : CTT--AAGGTAG-GT--CCCTACTCGACAAA---G----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---GG-TAAC-----AAAAAA--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATA-TCGAGAA-GACA-CAT-A-CCCCTTTCTA-CCA-TT-TT-ACAATTTCA-CCTGAT-ATTAATATTTTGCAG--A------TATCAACACAT-TAG--GAA-A
gi|21035 : TT--AAGGTAG-GC--CCCTACTCGACAAA---A----TTT--CGTGT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ATC---T-TA---TG-TAACA----AAAAAA--AGCC--A-A-A-A-AT--AC-A-CA-TCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAA-C-CCCC-TTTTA-TCGTTT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21036 : TT--ATGGTAG-G---CCCTACTCAACAAA---G----TTT--CGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTAAG-AATGAC-ACC---T-CA---TG-TAAC-----AAAAAT--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAA-AA-GACATTAT-A-CCCA--TCTA-TCA-TT-GCAAAAATTTCA-CCTGACAATCAATA-TTTGCA---A------TATCAACACAA-TAG--GAA-AG-A-A--AAATAATTT
gi|21037 : TT--AAGGAAG-GT--CCCTATTCGACAAC---A----TTT--TGTTT--AAAATATTGTTT-T-CTTCC--ATGAGA--TATTTAG-AATAAC-ACT---T-TA---TT-TAAC-----AAAAAA--
gi|21038 : T--CTCTACTCGACAAA---A----TGT--TGCTT--AAAGTATTGTTT-T-CTTCC--TTTAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-------AAAA--GGCC--A-ACA-A-AT--AC-A-CA-CCTTGAT-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-CAT-ACCCCC-TTCTA-ATA-TT-GT-AAAATTTCA-CCTGAC-ATCGATATTTTGCAG--A------TATCAACAAGA-TAG--GAA-TG-C-A--AAATAATTT
gi|21039 : TTGACAAA--------TTT--TGTTT--AAAGTGTTGTTT-TGCTTCC--TTGAAA--TATTTAG-AATAACCACC---TGTAGGACG-TAAC-----AAAA-----GCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTACGTGTTTC-T-GAACT-GATTC----AGAA-GACA-TAT-A-CCCC-TTTTA-TCC-TT-GTAAAAATTTCA-CCT-AC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG----A-AG-CAA--AAATAATTT
gi|21040 : GACAAA---ACTTTTTT--TGTTTTAAAGGTATTGTTT-T-CTT-C--TTGAAA--TATTTAG-AAAAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--ACA-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-CTTTATTCC-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21041 : --TGTCT--AAATCATTGTAT-T-GA-CC--TTCAAA--AAC--AGCAATAATTGTA---T-AA---TG-TAACCAAAAAAAAAA--GGCC--A-A-ACA-AT--AT-A-CA-CCTTGAC-TACTTAC-T-TTTC-T-GA-CTCCCAAC-TGAA-AA-GATA-TAT-G-CCCC-TTCTA-TCA-TT-GT-ACAATTTCA-TCCGAC-ATCAATA
gi|21042 : --AAAGTACAGTTT-T-TTTCCACTTGAAAATCATTT-G-ACTAGC-CCA---T-TT---TG-TAACTTT--AAAAAA--A-CC--A--------T--AC-A-AA-TCTTGAC-TGCTTAC-C-TTTC-T-GA-CCAGAATC-TCCAGAA-GACA-TGTAA-CCCC-TTCTT-TCA-TC-AC-ACAATTTCA-ACCAA--ATCAATA
gi|21043 : -TA---TG-TAAC-----AAAAAG--GGCCCTA-A-A-ATAT--AC-A-CA-CCTTGAC-TGCTTAT-T-TTTC-T-GT-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TT-AT-ATAATTTAA-TCTGAC-ATCAGTATTTTGCAG--A------TATCAACACAT-TAG--AAA-AG-C-G--AAATAATTT
gi|21044 : -TAAC-----AAAAAAAAGGCC--A-A-A-AAAT--AC-A-CA-CCTTGAC-TG-TTAC-C-TTTT-T-GA-CTGGAATC-TCAAGAAGGACA-TAT-ACCCCC-TTTTA-TCC-TT-GT-TAAATTTCACCCTGAC-ATCATCA-TTTGCA---A------TATCAACACAACTAGACGAA-AGAC-A--AA
gi|21045 : -TAT-A-CCCCCTTCTA-TCA-TT-GT-AAAATTTCA-CTTGAC-ATCAATATTTTGCAG--A------TTTCAGCACAG-TAG--GAA-AT-C-A--AAATCAT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 1111 11 11111 111 333333
lowQualScore : 3 0 5 2 0 3 22 0 2 0 3 66 3 5 5 0 0 6 3 4444 22 2 3 1 44 3 44 66666666 33 55 1 2 2 33 1 33 5 5 444 2 444 2 22222 666 88 333 2 5 33 2 2 2 2 1 444 2 2 2 2 5 2 2 4 9 2 4 2 4 2 2 888 000000 2 33 2 2 2 33
lowQualScore : . . . . . . .. . . . . .. . . . . . . . .... .. . . . .. . .. ........ .. .. . . . .. . .. . . ... . ... . ..... ... .. ... . . .. . . . . . ... . . . . . . . . . . . . . . . ... ...... . .. . . . ..
lowQualScore : 2 0 5 5 0 2 55 0 5 0 2 55 2 5 5 8 8 7 2 2222 33 5 0 0 66 3 22 66666666 44 66 7 5 5 44 7 44 0 0 444 4 111 2 44444 222 44 888 5 0 44 5 5 5 5 1 000 5 5 5 5 0 4 4 7 4 4 7 4 7 4 4 111 777777 7 77 7 9 9 99
consensus : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Reference ( family-837 ) : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21026 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCACG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21027 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAA-TTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CGCTGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAG-ATTG-TT-T-CTTCC--T--GAA--TA-TTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21028 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCAT-ATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGC--ATAGAACATCAGC-CG-TGATC-GATCAATGTCATGACTCAGG-AATCTGAAGGCTGAC-AAATATATTGGTTAACAATATCAAT-AAGATCTTTAAACATTAACCCAAA-TGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTAT-TATATATATAATTTACTATA-A----TTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21029 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGGAAAATTACAACGATCGTCAAAATTTATCCAAAATGCTTCATACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGATTCCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC--G-TGATCGGATCAATGTCATGACTCAGGGAATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATA--GATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-A-TTACTATATA----TTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA--GGCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21030 : TAAATAT-ATTTCATAAATAATTGTTATAACA----TTAAAAATT--AAGATAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AGAGTATAGTTT-C-TTTCC--TTGAAA--TCTTAAA-AATAAC-ACCTCTT-TA---TA-TA
gi|21031 : tacttgcaaaatcatAAATATT-ATATA-ACATAT-AT--ACGACAGA----TTT------AGTTTTAAGCTTTTAAGGTAT-GT--CCCTATTCGACAAA---A----TGT--TGTTT--AAA-CA---------CTTC------AGA--TATTTAG-AATAAT-ACC---T-TA---TGGTAAC-----AAAAAA--GGCC--A-G-A----T--AC-AACA-CCTTGAC-TGTTTAC-T-TTTC-TTGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TTTGT-AAAATTTCA-CCTGAC-ATCAATATTTTCCCG--A------TATCAACACAA-AAG--GAA-AG-C-A--AAATAGTTT
gi|21032 : AAATT-AAATTT--AAGGTATTGTTTCCCTACTCGACAAACAAA----CTTCTTGTTTT-AAAGTATTGTTTCT-CTTCC--TTGAAA--TATTTAGGAATAAC-AC------TA---TG-TAAC-----AAAAAG--G--C--A-A-A-A-ATTCACCA-CAGCCTTGACGTGTTTAC-T-TTTCCT-GA-CTAGA-TCGCCAAGAAAGACA--AT-A-CCCC-TTCTA-TCATTT-GT-AAAA-TTCA-CCCGAC-ATCGATATTTTGCAATCA------T-TCAACACAA-TAG--GAAGAG-C-AAGAAATAATTT
gi|21033 : aACACTT--AAGGTAT-GC--CCCTACTCGACAAA---A----TTT--TGTTT--
gi|21034 : CTT--AAGGTAG-GT--CCCTACTCGACAAA---G----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---GG-TAAC-----AAAAAA--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATA-TCGAGAA-GACA-CAT-A-CCCCTTTCTA-CCA-TT-TT-ACAATTTCA-CCTGAT-ATTAATATTTTGCAG--A------TATCAACACAT-TAG--GAA-A
gi|21035 : TT--AAGGTAG-GC--CCCTACTCGACAAA---A----TTT--CGTGT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ATC---T-TA---TG-TAACA----AAAAAA--AGCC--A-A-A-A-AT--AC-A-CA-TCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAA-C-CCCC-TTTTA-TCGTTT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21036 : TT--ATGGTAG-G---CCCTACTCAACAAA---G----TTT--CGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTAAG-AATGAC-ACC---T-CA---TG-TAAC-----AAAAAT--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAA-AA-GACATTAT-A-CCCA--TCTA-TCA-TT-GCAAAAATTTCA-CCTGACAATCAATA-TTTGCA---A------TATCAACACAA-TAG--GAA-AG-A-A--AAATAATTT
gi|21037 : TT--AAGGAAG-GT--CCCTATTCGACAAC---A----TTT--TGTTT--AAAATATTGTTT-T-CTTCC--ATGAGA--TATTTAG-AATAAC-ACT---T-TA---TT-TAAC-----AAAAAA--
gi|21038 : T--CTCTACTCGACAAA---A----TGT--TGCTT--AAAGTATTGTTT-T-CTTCC--TTTAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-------AAAA--GGCC--A-ACA-A-AT--AC-A-CA-CCTTGAT-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-CAT-ACCCCC-TTCTA-ATA-TT-GT-AAAATTTCA-CCTGAC-ATCGATATTTTGCAG--A------TATCAACAAGA-TAG--GAA-TG-C-A--AAATAATTT
gi|21039 : TTGACAAA--------TTT--TGTTT--AAAGTGTTGTTT-TGCTTCC--TTGAAA--TATTTAG-AATAACCACC---TGTAGGACG-TAAC-----AAAA-----GCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTACGTGTTTC-T-GAACT-GATTC----AGAA-GACA-TAT-A-CCCC-TTTTA-TCC-TT-GTAAAAATTTCA-CCT-AC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG----A-AG-CAA--AAATAATTT
gi|21040 : GACAAA---ACTTTTTT--TGTTTTAAAGGTATTGTTT-T-CTT-C--TTGAAA--TATTTAG-AAAAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--ACA-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-CTTTATTCC-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21041 : --TGTCT--AAATCATTGTAT-T-GA-CC--TTCAAA--AAC--AGCAATAATTGTA---T-AA---TG-TAACCAAAAAAAAAA--GGCC--A-A-ACA-AT--AT-A-CA-CCTTGAC-TACTTAC-T-TTTC-T-GA-CTCCCAAC-TGAA-AA-GATA-TAT-G-CCCC-TTCTA-TCA-TT-GT-ACAATTTCA-TCCGAC-ATCAATA
gi|21042 : --AAAGTACAGTTT-T-TTTCCACTTGAAAATCATTT-G-ACTAGC-CCA---T-TT---TG-TAACTTT--AAAAAA--A-CC--A--------T--AC-A-AA-TCTTGAC-TGCTTAC-C-TTTC-T-GA-CCAGAATC-TCCAGAA-GACA-TGTAA-CCCC-TTCTT-TCA-TC-AC-ACAATTTCA-ACCAA--ATCAATA
gi|21043 : -TA---TG-TAAC-----AAAAAG--GGCCCTA-A-A-ATAT--AC-A-CA-CCTTGAC-TGCTTAT-T-TTTC-T-GT-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TT-AT-ATAATTTAA-TCTGAC-ATCAGTATTTTGCAG--A------TATCAACACAT-TAG--AAA-AG-C-G--AAATAATTT
gi|21044 : -TAAC-----AAAAAAAAGGCC--A-A-A-AAAT--AC-A-CA-CCTTGAC-TG-TTAC-C-TTTT-T-GA-CTGGAATC-TCAAGAAGGACA-TAT-ACCCCC-TTTTA-TCC-TT-GT-TAAATTTCACCCTGAC-ATCATCA-TTTGCA---A------TATCAACACAACTAGACGAA-AGAC-A--AA
gi|21045 : -TAT-A-CCCCCTTCTA-TCA-TT-GT-AAAATTTCA-CTTGAC-ATCAATATTTTGCAG--A------TTTCAGCACAG-TAG--GAA-AT-C-A--AAATCAT
blockSeqs : A C A C T T C C G G A AA T A T A T ATTG CA G G T TT T TT ACTTT CT TA T C G AC T AT G C TCT G GGA G CAAAA AAG CT CG C T TC C A G G C GTG C T A G A T A C C T T T A C A ATC TATATG C AC G A A AG
blockSeqs : A . A C . T C . G . A A T . T . T . TA G G T . . . CAAA . T T . . . T . C T . . . . TTT G A CG . A . . . . . C T . . . . G . . C T . T . A . . T TATATG . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . T . C G G T . . . A . . T . . . T . . . . . . . A G A CG . . . . . . . C T . . . . . . . . C . . . . . . T TATATG . . . . . .
blockSeqs : . G . C . A A . . . A . . T . . . T . . . . . . . . G . AC . . . . . . . T T . . . . . . . . C . . . . . . T . . . . . . .
blockSeqs : . . . . . T A . . . A . . T . . . T . . . . . . . . G . CA . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . A . . . A . . T . . . T . . . . . . . . A . G . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : C . . . A . . T . . . T . . . . . . . . G . A . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . A . . T . . . T . . . . . . . . G . A . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . G . . T . . . T . . . . . . . . G . A . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . A . . T . . . T . . . . . . . . G . A . . . . . . . T T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . G . . T . . . T . . . . . . . . A . A . . . . . . . T C . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . A . . T . . . T . . . . . . . . G . A . . . . . . . C T . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . A . . . . . . . C C . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : C* G** A** ******
originalCons : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCCAACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
finalCons : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATATTTATATATATATAT-ATTTACTATATA----TTCC-ACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAAG--GCC--AA--A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 111 1 11 11111 111 333333
lowQualScore : 3 0 5 2 0 3 22 0 2 0 3 66 3 5 5 99 111 6 99 1 55 2 3 1 44 3 44 66666666 33 55 1 2 2 33 1 33 5 5 444 2 444 2 22222 666 88 333 2 5 33 2 2 2 2 1 444 2 2 2 2 5 2 2 4 9 2 4 2 4 2 2 888 000000 2 33 2 2 2 33
lowQualScore : . . . . . . .. . . . . .. . . . .. ... . .. . .. . . . .. . .. ........ .. .. . . . .. . .. . . ... . ... . ..... ... .. ... . . .. . . . . . ... . . . . . . . . . . . . . . . ... ...... . .. . . . ..
lowQualScore : 2 0 5 5 0 2 55 0 5 0 2 55 2 5 5 22 777 7 22 3 88 5 0 0 66 3 22 66666666 44 66 7 5 5 44 7 44 0 0 444 4 111 2 44444 222 44 888 5 0 44 5 5 5 5 1 000 5 5 5 5 0 4 4 7 4 4 7 4 7 4 4 111 777777 7 77 7 9 9 99
consensus : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTATATATAT---ATAT-AT--TTACTATATATTCC-ACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
Reference ( family-837 ) : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTATATATAT---ATAT-AT--TTACTATATATTCC-ACAGAGATTGANACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21026 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGCACG-TGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTATATATAT---ATAT-AT--TTACTATATATTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21027 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAA-TTA-AACGATCGTCAAAATTTATCCAAA-TGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC-CGCTGATCGGATCAATGTCATGACTCAGG-AATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATAAAGATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTATATATAT---ATAT-AT--TTACTATATATTCCAACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAG-ATTG-TT-T-CTTCC--T--GAA--TA-TTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21028 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGAAAAATTA-AACGATCGTCAAAATTTATCCAAAATGCTTCAAACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCAT-ATTGATTGAT-CCATAATTAATTGTATATTAACATCAGCATGC--ATAGAACATCAGC-CG-TGATC-GATCAATGTCATGACTCAGG-AATCTGAAGGCTGAC-AAATATATTGGTTAACAATATCAAT-AAGATCTTTAAACATTAACCCAAA-TGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCC-AATTAA-TTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTAT-TATAT---ATATAAT--TTACTATA-ATTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTG-TT-T-CTTCC--T--GAA--TAATTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA---GCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21029 : GTAGGTAGCCATTGGTCTTTAAGAAAATGAAGGAAAATTACAACGATCGTCAAAATTTATCCAAAATGCTTCATACAATTTCAAAATGAAGTATAGAGCGTATTCAAAATTTTGTATATATACCCATCATTGATTGATTCCATAATTAATTGTATATTAACATCAGCATGCTTATAGAACATCAGC--G-TGATCGGATCAATGTCATGACTCAGGGAATCTGAAGGCTGACAAAATATATTGGTTAACAATATCAATA--GATCTTTAAACATTAACCCAAATTGTTCTGATACAAAGAACAGTATGATTTATCGGTATTATCCAAATTAATTTTCTTTTCGGATTCACGAATAATATATCCTACTTTTAAATAT--TTATATATAT---ATAT-A---TTACTATATATTCC-ACAGAGATTGATACTT--AAGGTAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAGC-ACC---T-TA---TG-TAAC-----AAAAGA--GGCC--ACG-A-A-AT--AC-A-CA-CCATGAC-TGCTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-TTCTA-TCA-AT-GT-AAAATTTGA-CCTGAC-ATCAATATCTTGCAT--ATATATGTATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21030 : TACTTGCAAA-ATCATTAAATATATTTCATAA-ATAATTGTTATA-------ACA----TTAAAAATT--AAGATAG-GT--CCCTACTCGACAAA---A----TTT--TGTTT--AGAGTATAGTTT-C-TTTCC--TTGAAA--TCTTAAA-AATAAC-ACCTCTT-TA---TA-TA
gi|21031 : AAATAT--T-ATATA-AC---ATAT-AT----ACGACAGATTT------AGTTTTAAGCTTTTAAGGTAT-GT--CCCTATTCGACAAA---A----TGT--TGTTT--AAA-CA---------CTTC------AGA--TATTTAG-AATAAT-ACC---T-TA---TGGTAAC-----AAAAAA--GGCC--A-G-A----T--AC-AACA-CCTTGAC-TGTTTAC-T-TTTC-TTGA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TTTGT-AAAATTTCA-CCTGAC-ATCAATATTTTCCCG--A------TATCAACACAA-AAG--GAA-AG-C-A--AAATAGTTT
gi|21032 : AAATT-AAATTT--AAGGTATTGTTTCCCTACTCGACAAACAAA----CTTCTTGTTTT-AAAGTATTGTTTCT-CTTCC--TTGAAA--TATTTAGGAATAAC-AC------TA---TG-TAAC-----AAAAAG--G--C--A-A-A-A-ATTCACCA-CAGCCTTGACGTGTTTAC-T-TTTCCT-GA-CTAGA-TCGCCAAGAAAGACA--AT-A-CCCC-TTCTA-TCATTT-GT-AAAA-TTCA-CCCGAC-ATCGATATTTTGCAATCA------T-TCAACACAA-TAG--GAAGAG-C-AAGAAATAATTT
gi|21033 : aACACTT--AAGGTAT-GC--CCCTACTCGACAAA---A----TTT--TGTTT--
gi|21034 : CTT--AAGGTAG-GT--CCCTACTCGACAAA---G----TTT--TGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ACC---T-TA---GG-TAAC-----AAAAAA--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATA-TCGAGAA-GACA-CAT-A-CCCCTTTCTA-CCA-TT-TT-ACAATTTCA-CCTGAT-ATTAATATTTTGCAG--A------TATCAACACAT-TAG--GAA-A
gi|21035 : TT--AAGGTAG-GC--CCCTACTCGACAAA---A----TTT--CGTGT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTTAG-AATAAC-ATC---T-TA---TG-TAACA----AAAAAA--AGCC--A-A-A-A-AT--AC-A-CA-TCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAA-C-CCCC-TTTTA-TCGTTT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21036 : TT--ATGGTAG-G---CCCTACTCAACAAA---G----TTT--CGTTT--AAAGTATTGTTT-T-CTTCC--TTGAAA--TATTAAG-AATGAC-ACC---T-CA---TG-TAAC-----AAAAAT--GGCCA-A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAA-AA-GACATTAT-A-CCCA--TCTA-TCA-TT-GCAAAAATTTCA-CCTGACAATCAATA-TTTGCA---A------TATCAACACAA-TAG--GAA-AG-A-A--AAATAATTT
gi|21037 : TT--AAGGAAG-GT--CCCTATTCGACAAC---A----TTT--TGTTT--AAAATATTGTTT-T-CTTCC--ATGAGA--TATTTAG-AATAAC-ACT---T-TA---TT-TAAC-----AAAAAA--
gi|21038 : T--CTCTACTCGACAAA---A----TGT--TGCTT--AAAGTATTGTTT-T-CTTCC--TTTAAA--TATTTAG-AATAAC-ACC---T-TA---TG-TAAC-------AAAA--GGCC--A-ACA-A-AT--AC-A-CA-CCTTGAT-TGTTTAC-T-TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-CAT-ACCCCC-TTCTA-ATA-TT-GT-AAAATTTCA-CCTGAC-ATCGATATTTTGCAG--A------TATCAACAAGA-TAG--GAA-TG-C-A--AAATAATTT
gi|21039 : TTGACAAA--------TTT--TGTTT--AAAGTGTTGTTT-TGCTTCC--TTGAAA--TATTTAG-AATAACCACC---TGTAGGACG-TAAC-----AAAA-----GCC--A-A-A-A-AT--AC-A-CA-CCTTGAC-TGTTTACGTGTTTC-T-GAACT-GATTC----AGAA-GACA-TAT-A-CCCC-TTTTA-TCC-TT-GTAAAAATTTCA-CCT-AC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG----A-AG-CAA--AAATAATTT
gi|21040 : GACAAA---ACTTTTTT--TGTTTTAAAGGTATTGTTT-T-CTT-C--TTGAAA--TATTTAG-AAAAAC-ACC---T-TA---TG-TAAC-----AAAAAA--GGCC--ACA-A-A-AT--AC-A-CA-CCTTGAC-TGTTTAC---TTTC-T-GA-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCC-CTTTATTCC-TT-GT-AAAATTTCA-CCTGAC-ATCAATATTTTGCAG--A------TATCAACACAA-TAG--GAA-AG-C-A--AAATAATTT
gi|21041 : --TGTCT--AAATCATTGTAT-T-GA-CC--TTCAAA--AAC--AGCAATAATTGTA---T-AA---TG-TAACCAAAAAAAAAA--GGCC--A-A-ACA-AT--AT-A-CA-CCTTGAC-TACTTAC-T-TTTC-T-GA-CTCCCAAC-TGAA-AA-GATA-TAT-G-CCCC-TTCTA-TCA-TT-GT-ACAATTTCA-TCCGAC-ATCAATA
gi|21042 : --AAAGTACAGTTT-T-TTTCCACTTGAAAATCATTT-G-ACTAGC-CCA---T-TT---TG-TAACTTT--AAAAAA--A-CC--A--------T--AC-A-AA-TCTTGAC-TGCTTAC-C-TTTC-T-GA-CCAGAATC-TCCAGAA-GACA-TGTAA-CCCC-TTCTT-TCA-TC-AC-ACAATTTCA-ACCAA--ATCAATA
gi|21043 : -TA---TG-TAAC-----AAAAAG--GGCCCTA-A-A-ATAT--AC-A-CA-CCTTGAC-TGCTTAT-T-TTTC-T-GT-CTAGAATC-TCAAGAA-GACA-TAT-A-CCCCCTTCTA-TCA-TT-AT-ATAATTTAA-TCTGAC-ATCAGTATTTTGCAG--A------TATCAACACAT-TAG--AAA-AG-C-G--AAATAATTT
gi|21044 : -TAAC-----AAAAAAAAGGCC--A-A-A-AAAT--AC-A-CA-CCTTGAC-TG-TTAC-C-TTTT-T-GA-CTGGAATC-TCAAGAAGGACA-TAT-ACCCCC-TTTTA-TCC-TT-GT-TAAATTTCACCCTGAC-ATCATCA-TTTGCA---A------TATCAACACAACTAGACGAA-AGAC-A--AA
gi|21045 : -TAT-A-CCCCCTTCTA-TCA-TT-GT-AAAATTTCA-CTTGAC-ATCAATATTTTGCAG--A------TTTCAGCACAG-TAG--GAA-AT-C-A--AAATCAT