lowQualScore : 111 11
lowQualScore : 555 3 222 777 6 3 9999 3 4 2 66 2 11 8 2 2 2 4 7777 2 2 2 2 3 2 2 55 55 2 2 4 2 22 22 4 4 2 333 2 22 2 88888888 4444 11 2 55 2 0
lowQualScore : ... . ... ... . . .... . . . .. . .. . . . . . .... . . . . . . . .. .. . . . . .. .. . . . ... . .. . ........ .... .. . .. . .
lowQualScore : 444 1 777 777 2 1 6666 1 7 9 88 9 88 9 4 4 4 7 4444 2 2 1 1 5 1 1 00 00 1 1 2 1 99 99 2 2 1 777 1 99 1 55555555 5555 22 2 99 4 2
consensus : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTACGGAACATAAA
Reference ( gi|104720 ) : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104721 : TTTGGT---TTT-TCGAG---CC-C-A-T-CG----GA-TCCCCGCA-TG--TT-T--TCTTTTGTATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TGCC-CT--T--TG-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104722 : TTTGCT---TTT-TCGGGAT-CC-G-A-TGCT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104724 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATA-CTT-CGTC-AT-TTACATAA-TAAATT----A-CATTT-TTTCA-ATTCAA-ATTGCT-GT-CCTG--TTTTC--A-C-TC-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GGCTACC--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104725 : TTTGGT---TTT-TCGAG---CC-A-A-T-CT----GA-TCCTCTCA-TG--TT-TATTCTGATATATAACTT-CGTC-AT-TTACACTA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CT-TAGC-ACG-AACATATTAA-CTACGAAACATAAA
gi|104726 : TTTGGT---TTT-TCGAGG--CC-C-A-T-CT----GA-ATCCCGCA-TG--TT-T--TCTGTTAT-TAACTTTCGTCCAT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTGGCTTTTC--A-C-TG-C-CT--T--TA-T-C-AGTA-ACA---A-GC---AA-GG----C--TA--C-TGGC-ACGTTTCAT-TTAACCTATGGAACATAAA
gi|104727 : TTTGGTGTTTTT-TTTAG---CC-A-A-T-CT----GA-TCTCCACA-TG--TT-T--ATTGTTATATAACTT-CGTC-AT-TTACACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCC-GT-CCTG--TTTTC--A-T-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GA----C--TA-CT-TGAC-AAG-ATCATATTAA-CTACGGAACATAA
gi|104728 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TA-TTCAAGGA-ATA---A--C--AAA-GG----C--TA-CC-TG-C-ACG-TCCATATTAA-CTATGGAACATAAA
gi|104729 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TATT-CAAGGA-ATA---A--C--AAA-GG----C--TA-CC-T-GC-ACG-TCCATATTAA-CTATGGGA-ATAAA
gi|104730 : TTTGGT---TTT-TCGAG---CC-A-A-T-CTAGCTGA-TCCCTGCA-TG--TT-TATTCTGTTATATAACTT-CGTC-AT-GTATACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-ACTG--TTTTC--A-C-CG-C-CT--T--TA-T-CAAGTA-ACA---A-GCTAAAA-GA----T--TA-
gi|104723 : TTTAGG---TTT-TCGAG---CCGCGA-T-CT----GAGTCCCCGCAGTGGTTT-T--TCTGTTAT-TAACCT---TC-GA-TCAC-TAA-TAAATG----G-AATTT-TGTCAGATTCAC-AT-GCT-GTTCCTGG-TTTTCG-A-C-TG-C-CT--T--TACT-CAATTA--CA---A-GC--AAA-GG----CT-TACCC-TGGC-A
gi|104731 : TGGT---TTTGTCGAGATGCC-C-A-T-CTT---GA-TCCCCGCA-TGG-TT-T--TCTGTT-TATA--------C-AT-----ATAA-GGAGTG----A-CATTT-ATTCC-ATTCACCATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T--AAGAAGACA---AGGC--AAA-GGA---CGGTA-CCATGGCAACG-TGTTTATTAA-CTATGGAACATA
gi|104732 : T---TTC-CCGAT---CC-A-A-T-CT----GA-TCCTGACA-AG--TT-TATTCTATTATAT----T-CGTC-AT-TTACACAA-TAAATG----A-CAAAT----AA-ATTCAC-ATCGCT-AT-CCTG--TTTTC--A-T-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GG--AAA-A------------------------TCATATTAA-CTAAGGAACATAAA
gi|104733 : T---TTT-GCGAT---CC-A-A-T-CT----GA-TCCC-ATA-AG--TTAG--TCTATATTATA--TT-CGTC-ATCTTACA-AA-TAAATGGACAA-CAT------AA-AATAAC-ATCGCT-GT-CCTG--TTTTC--A-CATG-T-CT--T--TA-TCCAAGTA-ACA---A-GC--AAA-----------A-C------------TCATATTAA-CTAAGGAACATA
gi|104734 : A-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104735 : TAACTT-TTTC-----TAAGCAA-TAAACAC---G-CATATATTTCA-ATTCAC-ATTGCTTGT-CCTG--TTTCC------TG-CGCT--TATCA-T-CAAGTA-GAA---A-GC--AAA-GG----C--CA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104736 : -CGTC-AT-TTACATAA-TAAATG----ACCATTT-TCT----TTCA--ATTAGT-GT-TTTG--TTGTCTGC-C-TG-C-CT--T--GA-G-CAAAAA-CCA---C-GC----A-GT----C--TC-CA-GGGC--CG--GGGTGTTAA-CTTGGGAACATAAA
gi|104737 : -CGTC-AT-TTACAAAA-TAAATA----A-TATTT-TTT---ACTCA--GTTGCC-GT-TTTG--TTTCT--GCC-TG-C-CT--T--GA-T-AAAA-A-AAACTCA-GC--AAA-GA----T--TG------------------ATTAA-TTTCAGAACATAAA
gi|104738 : -CATTT-TTTTA-GTTCAC-ATTA-T-GT-CCCC--TTTTC--A-C-TGTC-CTTAT--TA-T-TAAGTA-TCA---A-TC--GAACGT----T--TA-TT-TCTC-AAG-ATCATATTAA-
gi|104739 : -ATNAAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GC--AAA-------------------------CTCATATTAA-CTAAGGAACATA
Alignments
lowQualScore : 111 11
lowQualScore : 555 2 111 666 5 2 8888 2 3 2 66 2 11 7 2 2 2 4 6666 2 2 2 2 6 2 2 44 44 2 2 4 2 22 22 4 4 2 333 2 22 2 7777777 3333 00 2 55 2 5
lowQualScore : ... . ... ... . . .... . . . .. . .. . . . . . .... . . . . . . . .. .. . . . . .. .. . . . ... . .. . ....... .... .. . .. . .
lowQualScore : 000 9 888 444 7 9 9999 9 6 7 33 7 00 8 2 2 2 4 9999 1 1 0 0 3 0 0 88 88 0 0 0 0 88 88 0 0 0 555 0 88 0 1111111 3333 11 1 11 2 3
consensus : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
Reference ( family-832 ) : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTACGGAACATAAA
gi|104720 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104721 : TTTGGT---TTT-TCGAG---CC-C-A-T-CG----GA-TCCCCGCA-TG--TT-T--TCTTTTGTATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TGCC-CT--T--TG-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104722 : TTTGCT---TTT-TCGGGAT-CC-G-A-TGCT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104723 : TTTAGG---TTT-TCGAG---CCGCGA-T-CT----GAGTCCCCGCAGTGGTTT-T--TCTGTTAT-TAACCT---TC-GA-TCAC-TAA-TAAATG----G-AATTT-TGTCAGATTCAC-AT-GCT-GTTCCTGG-TTTTCG-A-C-TG-C-CT--T--TACT-CAATTA--CA---A-GC--AAA-GG----CT-TACCC-TGGC-A
gi|104724 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATA-CTT-CGTC-AT-TTACATAA-TAAATT----A-CATTT-TTTCA-ATTCAA-ATTGCT-GT-CCTG--TTTTC--A-C-TC-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GGCTACC--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104725 : TTTGGT---TTT-TCGAG---CC-A-A-T-CT----GA-TCCTCTCA-TG--TT-TATTCTGATATATAACTT-CGTC-AT-TTACACTA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CT-TAGC-ACG-AACATATTAA-CTACGAAACATAAA
gi|104726 : TTTGGT---TTT-TCGAGG--CC-C-A-T-CT----GA-ATCCCGCA-TG--TT-T--TCTGTTAT-TAACTTTCGTCCAT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTGGCTTTTC--A-C-TG-C-CT--T--TA-T-C-AGTA-ACA---A-GC---AA-GG----C--TA--C-TGGC-ACGTTTCAT-TTAACCTATGGAACATAAA
gi|104727 : TTTGGTGTTTTT-TTTAG---CC-A-A-T-CT----GA-TCTCCACA-TG--TT-T--ATTGTTATATAACTT-CGTC-AT-TTACACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCC-GT-CCTG--TTTTC--A-T-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GA----C--TA-CT-TGAC-AAG-ATCATATTAA-CTACGGAACATAA
gi|104728 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TA-TTCAAGGA-ATA---A--C--AAA-GG----C--TA-CC-TG-C-ACG-TCCATATTAA-CTATGGAACATAAA
gi|104729 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TATT-CAAGGA-ATA---A--C--AAA-GG----C--TA-CC-T-GC-ACG-TCCATATTAA-CTATGGGA-ATAAA
gi|104730 : TTTGGT---TTT-TCGAG---CC-A-A-T-CTAGCTGA-TCCCTGCA-TG--TT-TATTCTGTTATATAACTT-CGTC-AT-GTATACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-ACTG--TTTTC--A-C-CG-C-CT--T--TA-T-CAAGTA-ACA---A-GCTAAAA-GA----T--TA-
gi|104731 : TGGT---TTTGTCGAGATGCC-C-A-T-CTT---GA-TCCCCGCA-TGG-TT-T--TCTGTT-TATA--------C-AT-----ATAA-GGAGTG----A-CATTT-ATTCC-ATTCACCATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T--AAGAAGACA---AGGC--AAA-GGA---CGGTA-CCATGGCAACG-TGTTTATTAA-CTATGGAACATA
gi|104732 : T---TTC-CCGAT---CC-A-A-T-CT----GA-TCCTGACA-AG--TT-TATTCTATTATAT----T-CGTC-AT-TTACACAA-TAAATG----A-CAAAT----AA-ATTCAC-ATCGCT-AT-CCTG--TTTTC--A-T-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GG--AAA-A------------------------TCATATTAA-CTAAGGAACATAAA
gi|104733 : T---TTT-GCGAT---CC-A-A-T-CT----GA-TCCC-ATA-AG--TTAG--TCTATATTATA--TT-CGTC-ATCTTACA-AA-TAAATGGACAA-CAT------AA-AATAAC-ATCGCT-GT-CCTG--TTTTC--A-CATG-T-CT--T--TA-TCCAAGTA-ACA---A-GC--AAA-----------A-C------------TCATATTAA-CTAAGGAACATA
gi|104734 : A-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104735 : TAACTT-TTTC-----TAAGCAA-TAAACAC---G-CATATATTTCA-ATTCAC-ATTGCTTGT-CCTG--TTTCC------TG-CGCT--TATCA-T-CAAGTA-GAA---A-GC--AAA-GG----C--CA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104736 : -CGTC-AT-TTACATAA-TAAATG----ACCATTT-TCT----TTCA--ATTAGT-GT-TTTG--TTGTCTGC-C-TG-C-CT--T--GA-G-CAAAAA-CCA---C-GC----A-GT----C--TC-CA-GGGC--CG--GGGTGTTAA-CTTGGGAACATAAA
gi|104737 : -CGTC-AT-TTACAAAA-TAAATA----A-TATTT-TTT---ACTCA--GTTGCC-GT-TTTG--TTTCT--GCC-TG-C-CT--T--GA-T-AAAA-A-AAACTCA-GC--AAA-GA----T--TG------------------ATTAA-TTTCAGAACATAAA
gi|104738 : -CATTT-TTTTA-GTTCAC-ATTA-T-GT-CCCC--TTTTC--A-C-TGTC-CTTAT--TA-T-TAAGTA-TCA---A-TC--GAACGT----T--TA-TT-TCTC-AAG-ATCATATTAA-
gi|104739 : -ATNAAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GC--AAA-------------------------CTCATATTAA-CTAAGGAACATA
Alignments
lowQualScore : 111 11
lowQualScore : 555 2 111 666 5 2 8888 2 3 2 66 2 11 7 2 2 2 4 6666 2 2 2 2 6 2 2 44 44 2 2 4 2 22 22 4 4 2 333 2 22 2 7777777 3333 00 2 55 2
lowQualScore : ... . ... ... . . .... . . . .. . .. . . . . . .... . . . . . . . .. .. . . . . .. .. . . . ... . .. . ....... .... .. . .. .
lowQualScore : 000 9 888 444 7 9 9999 9 6 7 33 7 00 8 2 2 2 4 9999 1 1 0 0 3 0 0 88 88 0 0 0 0 88 88 0 0 0 555 0 88 0 1111111 3333 11 1 11 2
consensus : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
Reference ( family-832 ) : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104720 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104721 : TTTGGT---TTT-TCGAG---CC-C-A-T-CG----GA-TCCCCGCA-TG--TT-T--TCTTTTGTATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TGCC-CT--T--TG-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104722 : TTTGCT---TTT-TCGGGAT-CC-G-A-TGCT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104723 : TTTAGG---TTT-TCGAG---CCGCGA-T-CT----GAGTCCCCGCAGTGGTTT-T--TCTGTTAT-TAACCT---TC-GA-TCAC-TAA-TAAATG----G-AATTT-TGTCAGATTCAC-AT-GCT-GTTCCTGG-TTTTCG-A-C-TG-C-CT--T--TACT-CAATTA--CA---A-GC--AAA-GG----CT-TACCC-TGGC-A
gi|104724 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATA-CTT-CGTC-AT-TTACATAA-TAAATT----A-CATTT-TTTCA-ATTCAA-ATTGCT-GT-CCTG--TTTTC--A-C-TC-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GGCTACC--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104725 : TTTGGT---TTT-TCGAG---CC-A-A-T-CT----GA-TCCTCTCA-TG--TT-TATTCTGATATATAACTT-CGTC-AT-TTACACTA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CT-TAGC-ACG-AACATATTAA-CTACGAAACATAAA
gi|104726 : TTTGGT---TTT-TCGAGG--CC-C-A-T-CT----GA-ATCCCGCA-TG--TT-T--TCTGTTAT-TAACTTTCGTCCAT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTGGCTTTTC--A-C-TG-C-CT--T--TA-T-C-AGTA-ACA---A-GC---AA-GG----C--TA--C-TGGC-ACGTTTCAT-TTAACCTATGGAACATAAA
gi|104727 : TTTGGTGTTTTT-TTTAG---CC-A-A-T-CT----GA-TCTCCACA-TG--TT-T--ATTGTTATATAACTT-CGTC-AT-TTACACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCC-GT-CCTG--TTTTC--A-T-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GA----C--TA-CT-TGAC-AAG-ATCATATTAA-CTACGGAACATAA
gi|104728 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TA-TTCAAGGA-ATA---A--C--AAA-GG----C--TA-CC-TG-C-ACG-TCCATATTAA-CTATGGAACATAAA
gi|104729 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TATT-CAAGGA-ATA---A--C--AAA-GG----C--TA-CC-T-GC-ACG-TCCATATTAA-CTATGGGA-ATAAA
gi|104730 : TTTGGT---TTT-TCGAG---CC-A-A-T-CTAGCTGA-TCCCTGCA-TG--TT-TATTCTGTTATATAACTT-CGTC-AT-GTATACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-ACTG--TTTTC--A-C-CG-C-CT--T--TA-T-CAAGTA-ACA---A-GCTAAAA-GA----T--TA-
gi|104731 : TGGT---TTTGTCGAGATGCC-C-A-T-CTT---GA-TCCCCGCA-TGG-TT-T--TCTGTT-TATA--------C-AT-----ATAA-GGAGTG----A-CATTT-ATTCC-ATTCACCATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T--AAGAAGACA---AGGC--AAA-GGA---CGGTA-CCATGGCAACG-TGTTTATTAA-CTATGGAACATA
gi|104732 : T---TTC-CCGAT---CC-A-A-T-CT----GA-TCCTGACA-AG--TT-TATTCTATTATAT----T-CGTC-AT-TTACACAA-TAAATG----A-CAAAT----AA-ATTCAC-ATCGCT-AT-CCTG--TTTTC--A-T-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GG--AAA-A------------------------TCATATTAA-CTAAGGAACATAAA
gi|104733 : T---TTT-GCGAT---CC-A-A-T-CT----GA-TCCC-ATA-AG--TTAG--TCTATATTATA--TT-CGTC-ATCTTACA-AA-TAAATGGACAA-CAT------AA-AATAAC-ATCGCT-GT-CCTG--TTTTC--A-CATG-T-CT--T--TA-TCCAAGTA-ACA---A-GC--AAA-----------A-C------------TCATATTAA-CTAAGGAACATA
gi|104734 : A-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104735 : TAACTT-TTTC-----TAAGCAA-TAAACAC---G-CATATATTTCA-ATTCAC-ATTGCTTGT-CCTG--TTTCC------TG-CGCT--TATCA-T-CAAGTA-GAA---A-GC--AAA-GG----C--CA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104736 : -CGTC-AT-TTACATAA-TAAATG----ACCATTT-TCT----TTCA--ATTAGT-GT-TTTG--TTGTCTGC-C-TG-C-CT--T--GA-G-CAAAAA-CCA---C-GC----A-GT----C--TC-CA-GGGC--CG--GGGTGTTAA-CTTGGGAACATAAA
gi|104737 : -CGTC-AT-TTACAAAA-TAAATA----A-TATTT-TTT---ACTCA--GTTGCC-GT-TTTG--TTTCT--GCC-TG-C-CT--T--GA-T-AAAA-A-AAACTCA-GC--AAA-GA----T--TG------------------ATTAA-TTTCAGAACATAAA
gi|104738 : -CATTT-TTTTA-GTTCAC-ATTA-T-GT-CCCC--TTTTC--A-C-TGTC-CTTAT--TA-T-TAAGTA-TCA---A-TC--GAACGT----T--TA-TT-TCTC-AAG-ATCATATTAA-
gi|104739 : -ATNAAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GC--AAA-------------------------CTCATATTAA-CTAAGGAACATA
blockSeqs : GTT G ATG GCG A G AGCT G C G GT A AT A T C C A GACA C A G C T T T GC TG C A C G TA AT C T G CTC G TA C CTACC CCC A TT C
blockSeqs : . . AT C A . T . C . G . AT A . . . A C . . . . T . . G G . . T . . . T C . . . . . ACGG CCA . T .
blockSeqs : . . G G . . . . C . . . AT A . . . . . . . . . T . . . . . . . . . . . . . . . . . CT CC . T .
blockSeqs : . . . C . . . . C . . . . A . . . . . . . . . C . . . . . . . . . . . . . . . . . C CC . T .
blockSeqs : . . . A . . . . C . . . . A . . . . . . . . . T . . . . . . . . . . . . . . . . . C CC . A .
blockSeqs : . . . C . . . . C . . . . A . . . . . . . . . C . . . . . . . . . . . . . . . . . C CT . A .
blockSeqs : . . . A . . . . C . . . . A . . . . . . . . . C . . . . . . . . . . . . . . . . . C CT . T .
blockSeqs : . . . C . . . . T . . . . A . . . . . . . . . T . . . . . . . . . . . . . . . . . C CC . T .
blockSeqs : . . . C . . . . C . . . . A . . . . . . . . . C . . . . . . . . . . . . . . . . . C CC . T .
blockSeqs : . . . A . . . . G . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . C CC . T .
blockSeqs : . . . C . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . T CC . T .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . C CA . A .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . C TT . C .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . C C . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . . . . T C . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
finalCons : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
Alignments
lowQualScore : 111 11
lowQualScore : 555 2 111 666 5 2 8888 2 3 2 66 2 11 7 2 2 2 4 6666 2 2 2 2 6 2 2 44 44 2 2 4 2 22 22 4 4 2 333 2 22 2 7777777 3333 00 2 55 2
lowQualScore : ... . ... ... . . .... . . . .. . .. . . . . . .... . . . . . . . .. .. . . . . .. .. . . . ... . .. . ....... .... .. . .. .
lowQualScore : 000 9 888 444 7 9 9999 9 6 7 33 7 00 8 2 2 2 4 9999 1 1 0 0 3 0 0 88 88 0 0 0 0 88 88 0 0 0 555 0 88 0 1111111 3333 11 1 11 2
consensus : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
Reference ( family-832 ) : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104720 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104721 : TTTGGT---TTT-TCGAG---CC-C-A-T-CG----GA-TCCCCGCA-TG--TT-T--TCTTTTGTATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TGCC-CT--T--TG-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104722 : TTTGCT---TTT-TCGGGAT-CC-G-A-TGCT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104723 : TTTAGG---TTT-TCGAG---CCGCGA-T-CT----GAGTCCCCGCAGTGGTTT-T--TCTGTTAT-TAACCT---TC-GA-TCAC-TAA-TAAATG----G-AATTT-TGTCAGATTCAC-AT-GCT-GTTCCTGG-TTTTCG-A-C-TG-C-CT--T--TACT-CAATTA--CA---A-GC--AAA-GG----CT-TACCC-TGGC-A
gi|104724 : TTTGGT---TTT-TCGAG---CC-C-A-T-CT----GA-TCCCCGCA-TG--TT-T--TCTGTTATATA-CTT-CGTC-AT-TTACATAA-TAAATT----A-CATTT-TTTCA-ATTCAA-ATTGCT-GT-CCTG--TTTTC--A-C-TC-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GGCTACC--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104725 : TTTGGT---TTT-TCGAG---CC-A-A-T-CT----GA-TCCTCTCA-TG--TT-TATTCTGATATATAACTT-CGTC-AT-TTACACTA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CT-TAGC-ACG-AACATATTAA-CTACGAAACATAAA
gi|104726 : TTTGGT---TTT-TCGAGG--CC-C-A-T-CT----GA-ATCCCGCA-TG--TT-T--TCTGTTAT-TAACTTTCGTCCAT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTGGCTTTTC--A-C-TG-C-CT--T--TA-T-C-AGTA-ACA---A-GC---AA-GG----C--TA--C-TGGC-ACGTTTCAT-TTAACCTATGGAACATAAA
gi|104727 : TTTGGTGTTTTT-TTTAG---CC-A-A-T-CT----GA-TCTCCACA-TG--TT-T--ATTGTTATATAACTT-CGTC-AT-TTACACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCC-GT-CCTG--TTTTC--A-T-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GA----C--TA-CT-TGAC-AAG-ATCATATTAA-CTACGGAACATAA
gi|104728 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TA-TTCAAGGA-ATA---A--C--AAA-GG----C--TA-CC-TG-C-ACG-TCCATATTAA-CTATGGAACATAAA
gi|104729 : TTTGGT---TTT-TCGAA---CC-C-AAG-CT----GA-TCCC-GCA-CG--TT-T---CTGTTATATA--CT-CGTC-AT-TTACATAAATAAATG----A-CATTT-GTCCA-ATTCAC-AT-GCT-GT-CCT---TTTTC--A-C-TG-C-CT--T--TATT-CAAGGA-ATA---A--C--AAA-GG----C--TA-CC-T-GC-ACG-TCCATATTAA-CTATGGGA-ATAAA
gi|104730 : TTTGGT---TTT-TCGAG---CC-A-A-T-CTAGCTGA-TCCCTGCA-TG--TT-TATTCTGTTATATAACTT-CGTC-AT-GTATACAA-TAAATG----A-CAATT-TTTCA-ATTCAC-ATCGCT-GT-ACTG--TTTTC--A-C-CG-C-CT--T--TA-T-CAAGTA-ACA---A-GCTAAAA-GA----T--TA-
gi|104731 : TGGT---TTTGTCGAGATGCC-C-A-T-CTT---GA-TCCCCGCA-TGG-TT-T--TCTGTT-TATA--------C-AT-----ATAA-GGAGTG----A-CATTT-ATTCC-ATTCACCATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T--AAGAAGACA---AGGC--AAA-GGA---CGGTA-CCATGGCAACG-TGTTTATTAA-CTATGGAACATA
gi|104732 : T---TTC-CCGAT---CC-A-A-T-CT----GA-TCCTGACA-AG--TT-TATTCTATTATAT----T-CGTC-AT-TTACACAA-TAAATG----A-CAAAT----AA-ATTCAC-ATCGCT-AT-CCTG--TTTTC--A-T-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GG--AAA-A------------------------TCATATTAA-CTAAGGAACATAAA
gi|104733 : T---TTT-GCGAT---CC-A-A-T-CT----GA-TCCC-ATA-AG--TTAG--TCTATATTATA--TT-CGTC-ATCTTACA-AA-TAAATGGACAA-CAT------AA-AATAAC-ATCGCT-GT-CCTG--TTTTC--A-CATG-T-CT--T--TA-TCCAAGTA-ACA---A-GC--AAA-----------A-C------------TCATATTAA-CTAAGGAACATA
gi|104734 : A-TG--TT-T--TCTGTTATATAACTT-CGTC-AT-TTACATAA-TAAATG----A-CATTT-TTTCA-ATTCAC-ATTGCT-GT-CCTG--TTTTC--A-C-TG-C-CT--T--TA-T-CAAGTA-ACA---A-GC--AAA-GG----C--TA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104735 : TAACTT-TTTC-----TAAGCAA-TAAACAC---G-CATATATTTCA-ATTCAC-ATTGCTTGT-CCTG--TTTCC------TG-CGCT--TATCA-T-CAAGTA-GAA---A-GC--AAA-GG----C--CA-CC-TGGC-ACG-TTCATATTAA-CTATGGAACATAAA
gi|104736 : -CGTC-AT-TTACATAA-TAAATG----ACCATTT-TCT----TTCA--ATTAGT-GT-TTTG--TTGTCTGC-C-TG-C-CT--T--GA-G-CAAAAA-CCA---C-GC----A-GT----C--TC-CA-GGGC--CG--GGGTGTTAA-CTTGGGAACATAAA
gi|104737 : -CGTC-AT-TTACAAAA-TAAATA----A-TATTT-TTT---ACTCA--GTTGCC-GT-TTTG--TTTCT--GCC-TG-C-CT--T--GA-T-AAAA-A-AAACTCA-GC--AAA-GA----T--TG------------------ATTAA-TTTCAGAACATAAA
gi|104738 : -CATTT-TTTTA-GTTCAC-ATTA-T-GT-CCCC--TTTTC--A-C-TGTC-CTTAT--TA-T-TAAGTA-TCA---A-TC--GAACGT----T--TA-TT-TCTC-AAG-ATCATATTAA-
gi|104739 : -ATNAAC-ATCGCT-GT-CCTG--TTTTC--A-C-TG-T-CT--T--TA-T-CCAGTA-ACA---A-GC--AAA-------------------------CTCATATTAA-CTAAGGAACATA