lowQualScore : 11111 1111111 111 11 222222222222222 1111 2 11111
lowQualScore : 3 0 22222 2 3333 666 2 77777 2 0000000 33 2 44 2 222 33 2 33 33 5555 2 2 0 2 2 66 999 2 3 555555555555555 2222 33 99999999 2 5 0 99999 11111 3
lowQualScore : . . ..... . .... ... . ..... . ....... .. . .. . ... .. . .. .. .... . . . . . .. ... . . ............... .... .. ........ . . . ..... ..... .
lowQualScore : 3 6 88888 5 9999 999 5 11111 5 6666666 44 2 00 2 888 22 4 11 55 0000 4 4 9 4 4 00 999 5 2 444444444444444 4444 44 11111111 5 2 0 33333 44444 1
consensus : TTATTATA-CCTCACTAT---TATAATT-CCAT--ACA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-GA-C-AG--TCA-CGT--G-NAAGGG----AGG-ACA-AAAC-TTCGT-GTCCCCCTCC-AACATC-GTA-TCTC------CCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT---C-CC---G-CAAGAGTT-ATCGTT
Reference ( gi|108719 ) : TTATTATA-CCTCATTAT---TATAATT-CCAT--ATA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-GA-A-AG--TCA-CGT--G-TAAGGG----AGG-ACA-AAAC-TTCGT-ATCCCCCTCC-AACATT-GTA-TCTC------CCT-C----CATCACG--T--TCCACCCC--------TTCGGAAGC-CTCATGCA-TTT---C-CC---A-CAAGAGTT-ATCGTT
gi|108711 : TTATTATA-CCTCATTAT---TATAATT-CCAT--ATA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-GA-C-AG--TCA-CGT--G-GAAGGG----AGG-ACA-AAAC-TACAT-ATCCCCCTCC-AACATC-ATT-TCTC------CCT-G----CATCAAG--T--TCCATCCC--------TTCGGAAGC-CTAATGCATTTT---C-CC---G-TAAGAGTT-ATCGTT
gi|108712 : aTTATTATA-CCTCATTAT---TATAATT-CCAT--ATA---AC-G-C---GA-T-------A--TCTAAT-TGGTCT-A-GA-C-AG--TCA-CGT--G-GAAGGG----AGG-ACA-AAAC-TTCGT-ATCCCCCTCC-AACATC-GTA-TCTC------CTT-G----CATCGAG--T--TCCACCCC--------TTTGGAAAC-CTCATGCATTTT---T-TC---G-CAAGAGTT-AACGTT
gi|108714 : aTTATTATA-CTTCATTAT---TCTAATT-CTAT--ACA---AC-G-C---GA-T-------A--TCTGAT-TGGTCT-A-GA-C-AG--TCA-CGT--G-GAAGGG----AGG-ATA-AAAC-TTCGA-GTCCCCCTCC-AACATC-GTA-TCTC------CCT-G----CAACAAG--T--TCCACCCA--------TTCGGAAGC-TTCATGAATTTT---C-CC---A-CAAGAGTT-ATCGTT
gi|108715 : aTTATTATA-CCTCGCTAT---TACAATT-CCAT--ACA---AC-A-C---GA-T-------A--TCTGAT-TGGTCT-A-AA-C-AG--TCA-CGT--G-GATGGG----AGG-ATA-AAAC-TTTGT-ATCTCCCTCA-AACATT-AAA-TTTC------C---C----CATCATA--T--T-----CC--------CTCGGAAGC-CTCTTGCATTTT---C-CT---G-CAAGAGTT-ATCATT
gi|108716 : aTTATTGTA-CCTCAATATAAATATA-TT-C-----ATA---ACAG-CACGGA-T-------A--TCTGAT-TGGTCCTA-GA-ACAG--TCAACGT--G-CTAGGG----AAA-ACA-AAAT-GGCAT-GTCTCCTTCA-AACATC-ATA-TTTT------C-T-C----TATCATG--C--TCCACCCC--------TTCGGAAGT-CTCGTGCATTTT---C-CC---G-CAAGAGTT-ATAGTT
gi|108713 : aTTATTATAACCTCATTTT---AATAATT-C-AT---TAC--AC-GTC---GAAT-------AAATCTGATGTGGTTC-A-GA-C-AG--TCA-CGTTGG-TA-GGG----AGGTACA-AA-C-TTCGTTCTCCCCTTCC-AAGCTC-GTAATTTC------CCTGT----CATCG-A--T--TCCACCCC--------TCGGAAAGC-CTCATG-A-TTT---T-TCTCGG-CAAGAGTTAATCGTT
gi|108720 : aTTATTATA-CCTCAGTTT---AATTATT-CTAT--GCA---GC-A-A---AG-A-------A--TCTTAT-TGGTTC-ATGA-C-AT--TCA-CTT--G---ACCG-----GG-CCATAAAT-ATCAT-ATTTCCCTGT---CATTCGCA--CTT------TTA-A----CATTCTA--T--TCCACCAC--------TTCGGATCCACTC--GCA-TTT---TACC---G-CAAGAGTT-ATCGTT
gi|108721 : TCATTACA-CCTCACTA--------A----CAG--ACA---AC-G-T---GA-T-------A--TATGAT-TGGTCT-A-GA-C-AG--TTA-CGT--
gi|108722 : TATTATG-CCTCACTAT----ATAATT-CCAT--ACA---AC-G-T---GA-TT------A--TCTGAT-TGGTCC-A-GG-A-AG--TCA-TGT--G--GATGG----AGG-ATA-AATC-TTTGT-AT-CTCCTCA-AACATC-ATA-TTCC------CCC-C----CCCCCCC--C--CCCCCCCCCCTTTCCATTTGGAAGC-CTCATGCATTTT---C-CC---G-CAAGAATT-ATTGTT
gi|108723 : TATA-C-TCAT-AT---T-TAATT-CCAT--ACA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-GACA-AG--TCA-CGT--G-GAAGGG----AGG-ACA-AAGC-TTCGT-ATCCCC-TCC-AACATC--TA-TCTC------CCT-G----CATCAAG--T--TCCACACC--------TTCGGAAGC-CTCATGCATTTT---C-CC---G-CAAG
gi|108724 : TATA-TCTCACTGT---ATTAATT-CCAT--TCA---AC-G-A---GA-T-------A--TTTGAT-TGGTCT-A-GA-C-TG--TCA-CTT--G-CAGGGG----AGG-ATA-AAGT-TTCGT-AACTCCCTCA-AACATC-ATA-T-TA------CCT------CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108725 : TATA-TCTCACTGT---ATTAATT-CCAT--TCA---AC-G-A---GA-T-------A--TTTGAT-TGGTCT-A-GA-C-TG--TCA-CTT--G-CAGGGG----AGG-ATA-AAGT-TTCGT-AACTCCCTCA-AACATC-ATA-TTAC----------T----CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108718 : ATTAT---TATACCT-CAAGGGATAGACAC-GAC---GA-TTACTGAAA--TACGAT-TGGTTA-A-AA-C-GA--TCA-CGT--GATCAGGG----CG--ACA-AAAC-TTCAT-GTACCCCTCC-
gi|108727 : TAT---T-TAATTATCAT--GCA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-GA-T-AG--TCA-CGT--G-CAAGGG----AGG-ACA-AAAC-TTCGT-GTCTCCCTCT-AACATC-ACA-T-TC------C---C----CATCATA--A--TCCACCCC--------TTCGGAAGC-CTCGTGTT-TTT---G-CC---AGCAAGAGTT-ATCGTTctcgggacgtcgtgtactgcatcccccggggagcatcgcgttttttcttacgaga
gi|108726 : aaATAACT-CCAT--ACA---AC-T-T---GA-T-------A--TCTGAT-TGGTCT-A-GA-C-AG--TCA-CAA--A-CAAGGGAATTAAG-ACA-AAACTTTTGT-GTCTCTCTCA-AAAATC-ATG-TTTC------CC--C----AATCATA--T--TCCACCCC--------TTCAGAAGC-CTTGTGCA-TTTTC-C-CC---A-CAAGAGTC-
gi|108728 : cttaatctgATT-CCAT--ACA---AC-G-C---GA-T-------A--TCTGAT-TGGTCC-A-
gi|108717 : GAT-TGGTTG-A-GC-A-GA--TCA-CGT--G-ATCGGG----GCG-ACA-AAAC-TTCAT-GTACCCCTCC-CTCGGT-GTG-CCTC------GGG-A----CGTCGTG--TACTGCATCCC--------TCGGGGAGC-CTTGTGTT-TTT---T-CTT--A-CAAGAGTT-ACTGTTaca
gi|108729 : attattatacctcaagggatagacacgacgattattgaaataaGAT-TGGTT----GA-A-CGGATCA-CGT--G-GTCGGG----GCG-ACA-AAAC-TTCAT-GTACCCCTC-------------TCTCGGAGTGCCT-CGGGACATTGTGTAT--TGCATCCC--------TCGGGGAGC-CTC--GCG-TTTTGAC-TT---A-CGAGAGAT-AT
gi|108730 : T--G-TAAGGG----AGA-ATA-AA---------ATTCTCCTCCAAACATC-AGA-TTTT------CC--C----TATCATA--T--TC-------------------GAGT-CTCGTGCT-TTT---T-CC---G-CTAGAGTT-TTCGCT
Alignments
lowQualScore : 11111 22222222
lowQualScore : 2 4 44444 2 2 88888 2 2 2 33 2 2 2 2 2 4 2 2 1 1 5555 2 2 2 33 1 2 2 1 2 5 00000000 77777 33 88888888 2 2 0 66 2 2
lowQualScore : . . ..... . . ..... . . . .. . . . . . . . . . . .... . . . .. . . . . . . ........ ..... .. ........ . . . .. . .
lowQualScore : 9 6 11111 4 4 22222 4 4 4 22 2 2 2 2 2 7 4 2 0 4 0000 4 4 4 88 6 4 4 4 4 4 11111111 33333 22 55555555 4 5 5 33 7 9
consensus : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTCGTA-TCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
Reference ( family-827 ) : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GNAAGGG----AGG-ACA-AAAC-TTCGTG-TCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
gi|108711 : TTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TACATA-TCCCCCTCCAA-CAT-CATT-TCTCCCT-G----CATCAAG--T--TCCATCCC--------TTCGGAAGC-CTAATGCATTTT--CCC-GTAAGAGTT-ATCGTT
gi|108712 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTAAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTCGTA-TCCCCCTCCAA-CAT-CGTA-TCTCCTT-G----CATCGAG--T--TCCACCCC--------TTTGGAAAC-CTCATGCATTTT--TTC-GCAAGAGTT-AACGTT
gi|108713 : aTTATTATAACCTCATTTT---AATAATT-CATTA-CA-CGT----CG-AAT-AAATCTGATGTGGTTC-A-GA-CA-G-TCA-CGTTGGTAGGG----AGGTACA-AA-C-TTCGTTCTCCCCTTCCAA-GCT-CGTAATTTCCCTGT----CATCG-A--T--TCCACCCC--------TCGGAAAGC-CTCATGATTTTT--CTCGGCAAGAGTTAATCGTT
gi|108714 : aTTATTATA-CTTCATTAT---TCTAATT-CTATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ATA-AAAC-TTCGAG-TCCCCCTCCAA-CAT-CGTA-TCTCCCT-G----CAACAAG--T--TCCACCCA--------TTCGGAAGC-TTCATGAATTTT--CCC-ACAAGAGTT-ATCGTT
gi|108715 : aTTATTATA-CCTCGCTAT---TACAATT-CCATA-CAACA-----CG-A-T-A--TCTGAT-TGGTCT-A-AA-CA-G-TCA-CGT-GGATGGG----AGG-ATA-AAAC-TTTGTA-TCTCCCTCAAA-CAT-TAAA-TTTCC---C----CATCATA--T--T-----CC--------CTCGGAAGC-CTCTTGCATTTT--CCT-GCAAGAGTT-ATCATT
gi|108716 : aTTATTGTA-CCTCAATATAAATATA--T-TCATAACAGCA-----CGGA-T-A--TCTGAT-TGGTCCTA-GAACA-G-TCAACGT-GCTAGGG----AAA-ACA-AAAT-GGCATG-TCTCCTTCAAA-CAT-CATA-TTTTC-T-C----TATCATG--C--TCCACCCC--------TTCGGAAGT-CTCGTGCATTTT--CCC-GCAAGAGTT-ATAGTT
gi|108717 : aTTATTATA-CCTCAAGGG----ATAG-----ACA-CGACGATTATTG-A-A-A--TAAGAT-TGGTTG-A-G--CA-GATCA-CGT-GATCGGG----GCG-ACA-AAAC-TTCATG-TACCCCTCC---C-T-CG-G-TGTGCCT-CGGGACGTCGTG--TACTGCATCCC--------TCGGGGAGC-CTTGTGTTTTTT--CTT-ACAAGAGTT-ACTGTT
gi|108719 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-AA-G-TCA-CGT-GTAAGGG----AGG-ACA-AAAC-TTCGTA-TCCCCCTCCAA-CAT-TGTA-TCTCCCT-C----CATCACG--T--TCCACCCC--------TTCGGAAGC-CTCATGCA-TTT--CCC-ACAAGAGTT-ATCGTT
gi|108720 : TTATTATA-CCTCAGTTT---AATTATT-CTATG-CAGCA-----AA-G-A-A--TCTTAT-TGGTTC-ATGA-CA-T-TCA-CTT-GACCGGG----C----CATAAAT-ATCATA-TTTCCCTGT---CATTCGCA--CTTTTA-A----CATTCTA--T--TCCACCAC--------TTCGGATCCACTCG--CATTTT--ACC-GCAAGAGTT-ATCGTT
gi|108721 : TCATTACA-CCTCACTA--------A----CAGA-CAACG-----TG-A-T-A--TATGAT-TGGTCT-A-GA-CA-G-TTA-CGT-
gi|108722 : TATTATG-CCTCACTAT----ATAATT-CCATA-CAACG-----TG-A-TTA--TCTGAT-TGGTCC-A-GG-AA-G-TCA-TGT-GGA-TGG----AGG-ATA-AATC-TTTGTA-TCTCC-TCAAA-CAT-CATA-TTCCCCC-C----CCCCCCC--C--CCCCCCCCCCTTTCCATTTGGAAGC-CTCATGCATTTT--CCC-GCAAGAATT-ATTGTT
gi|108723 : TATA-C-TCA-TAT---T-TAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CAAG-TCA-CGT-GGAAGGG----AGG-ACA-AAGC-TTCGTA-TCCCC-TCCAA-CAT-C-TA-TCTCCCT-G----CATCAAG--T--TCCACACC--------TTCGGAAGC-CTCATGCATTTT--CCC-GCAAG
gi|108724 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTCGTA-ACTCCCTCAAA-CAT-CATA-T-TACCT------CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108725 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTCGTA-ACTCCCTCAAA-CAT-CATA-TTAC----T----CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108726 : ATAACT-CCATA-CAACT-----TG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CAA-ACAAGGGAATTAAG-ACA-AAACTTTTGTG-TCTCTCTCAAA-AAT-CATG-TTTCCC--C----AATCATA--T--TCCACCCC--------TTCAGAAGC-CTTGTGCATTTTC-CCC-ACAAGAGTC-
gi|108727 : cttaatctgTAT---T-TAATTATCATG-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-TA-G-TCA-CGT-GCAAGGG----AGG-ACA-AAAC-TTCGTG-TCTCCCTCTAA-CAT-CACA-T-TCC---C----CATCATA--A--TCCACCCC--------TTCGGAAGC-CTCGTGTTTTTG--CCA-GCAAGAGTT-ATCGTT
gi|108728 : aaATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A--A-CA-
gi|108729 : GAT-TGGTTG-A--A-CG-GATCA-CGT-GGTCGGG----GCG-ACA-AAAC-TTCATG-TACCCCTCT---C-T-CGGA--GTGCCT-CGGGACATTGTGTAT--TGCATCCC--------TCGGGGAGC-CTC--GCGTTTTGACTT-ACGAGAGAT-AT
gi|108730 : T-GTAAGGG----AGA-ATA-AAAT-T--------CTCCTCCAAACAT-CAGA-TTTTCC--C----TATCATA--T--TC-------------------GAGT-CTCGTGC-TTTT--TCC-GCTAGAGTT-TTCGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|108718 ): ATTATTATACCTCAAGGGATAGACACGACGATTACTGAAATACGATTGGTTAAAACGATCACGTGATCAGGGCGACAAAACTTCATGTACCCCTCCCTCGGGACGTCGTGTACTGCATCCCCCGGGGAGCATCGCGTTTTTTCTTACGAGA
Alignments
lowQualScore : 11111 22222222
lowQualScore : 2 4 44444 2 2 88888 2 2 2 33 2 2 2 2 2 4 2 2 2 1 5555 2 2 2 33 2 3 2 2 1 2 5 00000000 77777 33 88888888 2 2 0 66 2 2
lowQualScore : . . ..... . . ..... . . . .. . . . . . . . . . . .... . . . .. . . . . . . . ........ ..... .. ........ . . . .. . .
lowQualScore : 9 6 11111 4 4 22222 4 4 4 22 2 2 2 2 2 7 4 2 2 4 0000 4 4 4 22 4 6 4 4 4 4 4 11111111 33333 22 55555555 4 5 5 33 7 9
consensus : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
Reference ( family-827 ) : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
gi|108711 : TTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TAC--AT-ATCCCCCTCCAA-CAT-CATT-TCTCCCT-G----CATCAAG--T--TCCATCCC--------TTCGGAAGC-CTAATGCATTTT--CCC-GTAAGAGTT-ATCGTT
gi|108712 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTAAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCTT-G----CATCGAG--T--TCCACCCC--------TTTGGAAAC-CTCATGCATTTT--TTC-GCAAGAGTT-AACGTT
gi|108713 : aTTATTATAACCTCATTTT---AATAATT-CATTA-CA-CGT----CG-AAT-AAATCTGATGTGGTTC-A-GA-CA-G-TCA-CGTTGGTAGGG----AGGTACA-AA-C-TTC--GTTCTCCCCTTCCAA-GCT-CGTAATTTCCCTGT----CATCG-A--T--TCCACCCC--------TCGGAAAGC-CTCATGATTTTT--CTCGGCAAGAGTTAATCGTT
gi|108714 : aTTATTATA-CTTCATTAT---TCTAATT-CTATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ATA-AAAC-TTC--GA-GTCCCCCTCCAA-CAT-CGTA-TCTCCCT-G----CAACAAG--T--TCCACCCA--------TTCGGAAGC-TTCATGAATTTT--CCC-ACAAGAGTT-ATCGTT
gi|108715 : aTTATTATA-CCTCGCTAT---TACAATT-CCATA-CAACA-----CG-A-T-A--TCTGAT-TGGTCT-A-AA-CA-G-TCA-CGT-GGATGGG----AGG-ATA-AAAC-TTT--GT-ATCTCCCTCAAA-CAT-TAAA-TTTCC---C----CATCATA--T--T-----CC--------CTCGGAAGC-CTCTTGCATTTT--CCT-GCAAGAGTT-ATCATT
gi|108716 : aTTATTGTA-CCTCAATATAAATATA--T-TCATAACAGCA-----CGGA-T-A--TCTGAT-TGGTCCTA-GAACA-G-TCAACGT-GCTAGGG----AAA-ACA-AAAT-GGC--AT-GTCTCCTTCAAA-CAT-CATA-TTTTC-T-C----TATCATG--C--TCCACCCC--------TTCGGAAGT-CTCGTGCATTTT--CCC-GCAAGAGTT-ATAGTT
gi|108717 : aTTATTATA-CCTCAAGGG----ATAG-----ACA-CGACGATTATTG-A-A-A--TAAGAT-TGGTTG-A-G--CA-GATCA-CGT-GATCGGG----GCG-ACA-AAAC-TTC--AT-GTACCCCTCC---C-T-CG-G-TGTGCCT-CGGGACGTCGTG--TACTGCATCCC--------TCGGGGAGC-CTTGTGTTTTTT--CTT-ACAAGAGTT-ACTGTT
gi|108719 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-AA-G-TCA-CGT-GTAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-TGTA-TCTCCCT-C----CATCACG--T--TCCACCCC--------TTCGGAAGC-CTCATGCA-TTT--CCC-ACAAGAGTT-ATCGTT
gi|108720 : TTATTATA-CCTCAGTTT---AATTATT-CTATG-CAGCA-----AA-G-A-A--TCTTAT-TGGTTC-ATGA-CA-T-TCA-CTT-GACCGGG----C----CATAAAT-ATC--AT-ATTTCCCTGT---CATTCGCA--CTTTTA-A----CATTCTA--T--TCCACCAC--------TTCGGATCCACTCG--CATTTT--ACC-GCAAGAGTT-ATCGTT
gi|108721 : TCATTACA-CCTCACTA--------A----CAGA-CAACG-----TG-A-T-A--TATGAT-TGGTCT-A-GA-CA-G-TTA-CGT-
gi|108722 : TATTATG-CCTCACTAT----ATAATT-CCATA-CAACG-----TG-A-TTA--TCTGAT-TGGTCC-A-GG-AA-G-TCA-TGT-GGA-TGG----AGG-ATA-AATC-TTT--GT-ATCTCC-TCAAA-CAT-CATA-TTCCCCC-C----CCCCCCC--C--CCCCCCCCCCTTTCCATTTGGAAGC-CTCATGCATTTT--CCC-GCAAGAATT-ATTGTT
gi|108723 : TATA-C-TCA-TAT---T-TAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CAAG-TCA-CGT-GGAAGGG----AGG-ACA-AAGC-TTC--GT-ATCCCC-TCCAA-CAT-C-TA-TCTCCCT-G----CATCAAG--T--TCCACACC--------TTCGGAAGC-CTCATGCATTTT--CCC-GCAAG
gi|108724 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-T-TACCT------CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108725 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-TTAC----T----CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108726 : ATAACT-CCATA-CAACT-----TG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CAA-ACAAGGGAATTAAG-ACA-AAACTTTT--GT-GTCTCTCTCAAA-AAT-CATG-TTTCCC--C----AATCATA--T--TCCACCCC--------TTCAGAAGC-CTTGTGCATTTTC-CCC-ACAAGAGTC-
gi|108727 : cttaatctgTAT---T-TAATTATCATG-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-TA-G-TCA-CGT-GCAAGGG----AGG-ACA-AAAC-TTC--GT-GTCTCCCTCTAA-CAT-CACA-T-TCC---C----CATCATA--A--TCCACCCC--------TTCGGAAGC-CTCGTGTTTTTG--CCA-GCAAGAGTT-ATCGTT
gi|108728 : aaATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A--A-CA-
gi|108729 : GAT-TGGTTG-A--A-CG-GATCA-CGT-GGTCGGG----GCG-ACA-AAAC-TTCATGT-ACCCCTCTC------T-CGGA--GTGCCT-CGGGACATTGTGTAT--TGCATCCC--------TCGGGGAGC-CTC--GCGTTTTGACTT-ACGAGAGAT-AT
gi|108730 : T-GTAAGGG----AGA-ATA-AAAT-T----------CTCCTCCAAACAT-CAGA-TTTTCC--C----TATCATA--T--TC-------------------GAGT-CTCGTGC-TTTT--TCC-GCTAGAGTT-TTCGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|108718 ): ATTATTATACCTCAAGGGATAGACACGACGATTACTGAAATACGATTGGTTAAAACGATCACGTGATCAGGGCGACAAAACTTCATGTACCCCTCCCTCGGGACGTCGTGTACTGCATCCCCCGGGGAGCATCGCGTTTTTTCTTACGAGA
Alignments
lowQualScore : 11111 22222222
lowQualScore : 2 4 44444 2 2 88888 2 2 2 33 2 2 2 2 2 4 2 2 2 1 5555 2 2 2 33 2 3 2 2 1 2 5 00000000 77777 33 88888888 2 2 0 66 2 2
lowQualScore : . . ..... . . ..... . . . .. . . . . . . . . . . .... . . . .. . . . . . . . ........ ..... .. ........ . . . .. . .
lowQualScore : 9 6 11111 4 4 22222 4 4 4 22 2 2 2 2 2 7 4 2 2 4 0000 4 4 4 22 4 6 4 4 4 4 4 11111111 33333 22 55555555 4 5 5 33 7 9
consensus : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
Reference ( family-827 ) : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
gi|108711 : TTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TAC--AT-ATCCCCCTCCAA-CAT-CATT-TCTCCCT-G----CATCAAG--T--TCCATCCC--------TTCGGAAGC-CTAATGCATTTT--CCC-GTAAGAGTT-ATCGTT
gi|108712 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTAAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCTT-G----CATCGAG--T--TCCACCCC--------TTTGGAAAC-CTCATGCATTTT--TTC-GCAAGAGTT-AACGTT
gi|108713 : aTTATTATAACCTCATTTT---AATAATT-CATTA-CA-CGT----CG-AAT-AAATCTGATGTGGTTC-A-GA-CA-G-TCA-CGTTGGTAGGG----AGGTACA-AA-C-TTC--GTTCTCCCCTTCCAA-GCT-CGTAATTTCCCTGT----CATCG-A--T--TCCACCCC--------TCGGAAAGC-CTCATGATTTTT--CTCGGCAAGAGTTAATCGTT
gi|108714 : aTTATTATA-CTTCATTAT---TCTAATT-CTATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ATA-AAAC-TTC--GA-GTCCCCCTCCAA-CAT-CGTA-TCTCCCT-G----CAACAAG--T--TCCACCCA--------TTCGGAAGC-TTCATGAATTTT--CCC-ACAAGAGTT-ATCGTT
gi|108715 : aTTATTATA-CCTCGCTAT---TACAATT-CCATA-CAACA-----CG-A-T-A--TCTGAT-TGGTCT-A-AA-CA-G-TCA-CGT-GGATGGG----AGG-ATA-AAAC-TTT--GT-ATCTCCCTCAAA-CAT-TAAA-TTTCC---C----CATCATA--T--T-----CC--------CTCGGAAGC-CTCTTGCATTTT--CCT-GCAAGAGTT-ATCATT
gi|108716 : aTTATTGTA-CCTCAATATAAATATA--T-TCATAACAGCA-----CGGA-T-A--TCTGAT-TGGTCCTA-GAACA-G-TCAACGT-GCTAGGG----AAA-ACA-AAAT-GGC--AT-GTCTCCTTCAAA-CAT-CATA-TTTTC-T-C----TATCATG--C--TCCACCCC--------TTCGGAAGT-CTCGTGCATTTT--CCC-GCAAGAGTT-ATAGTT
gi|108717 : aTTATTATA-CCTCAAGGG----ATAG-----ACA-CGACGATTATTG-A-A-A--TAAGAT-TGGTTG-A-G--CA-GATCA-CGT-GATCGGG----GCG-ACA-AAAC-TTC--AT-GTACCCCTCC---C-T-CG-G-TGTGCCT-CGGGACGTCGTG--TACTGCATCCC--------TCGGGGAGC-CTTGTGTTTTTT--CTT-ACAAGAGTT-ACTGTT
gi|108719 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-AA-G-TCA-CGT-GTAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-TGTA-TCTCCCT-C----CATCACG--T--TCCACCCC--------TTCGGAAGC-CTCATGCA-TTT--CCC-ACAAGAGTT-ATCGTT
gi|108720 : TTATTATA-CCTCAGTTT---AATTATT-CTATG-CAGCA-----AA-G-A-A--TCTTAT-TGGTTC-ATGA-CA-T-TCA-CTT-GACCGGG----C----CATAAAT-ATC--AT-ATTTCCCTGT---CATTCGCA--CTTTTA-A----CATTCTA--T--TCCACCAC--------TTCGGATCCACTCG--CATTTT--ACC-GCAAGAGTT-ATCGTT
gi|108721 : TCATTACA-CCTCACTA--------A----CAGA-CAACG-----TG-A-T-A--TATGAT-TGGTCT-A-GA-CA-G-TTA-CGT-
gi|108722 : TATTATG-CCTCACTAT----ATAATT-CCATA-CAACG-----TG-A-TTA--TCTGAT-TGGTCC-A-GG-AA-G-TCA-TGT-GGA-TGG----AGG-ATA-AATC-TTT--GT-ATCTCC-TCAAA-CAT-CATA-TTCCCCC-C----CCCCCCC--C--CCCCCCCCCCTTTCCATTTGGAAGC-CTCATGCATTTT--CCC-GCAAGAATT-ATTGTT
gi|108723 : TATA-C-TCA-TAT---T-TAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CAAG-TCA-CGT-GGAAGGG----AGG-ACA-AAGC-TTC--GT-ATCCCC-TCCAA-CAT-C-TA-TCTCCCT-G----CATCAAG--T--TCCACACC--------TTCGGAAGC-CTCATGCATTTT--CCC-GCAAG
gi|108724 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-T-TACCT------CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108725 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-TTAC----T----CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108726 : ATAACT-CCATA-CAACT-----TG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CAA-ACAAGGGAATTAAG-ACA-AAACTTTT--GT-GTCTCTCTCAAA-AAT-CATG-TTTCCC--C----AATCATA--T--TCCACCCC--------TTCAGAAGC-CTTGTGCATTTTC-CCC-ACAAGAGTC-
gi|108727 : cttaatctgTAT---T-TAATTATCATG-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-TA-G-TCA-CGT-GCAAGGG----AGG-ACA-AAAC-TTC--GT-GTCTCCCTCTAA-CAT-CACA-T-TCC---C----CATCATA--A--TCCACCCC--------TTCGGAAGC-CTCGTGTTTTTG--CCA-GCAAGAGTT-ATCGTT
gi|108728 : aaATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A--A-CA-
gi|108729 : GAT-TGGTTG-A--A-CG-GATCA-CGT-GGTCGGG----GCG-ACA-AAAC-TTCATGT-ACCCCTCTC------T-CGGA--GTGCCT-CGGGACATTGTGTAT--TGCATCCC--------TCGGGGAGC-CTC--GCGTTTTGACTT-ACGAGAGAT-AT
gi|108730 : T-GTAAGGG----AGA-ATA-AAAT-T----------CTCCTCCAAACAT-CAGA-TTTTCC--C----TATCATA--T--TC-------------------GAGT-CTCGTGC-TTTT--TCC-GCTAGAGTT-TTCGCT
blockSeqs : A T AAATA A A ATTAT G A T AA G T T A A A A T G A AATT T T T AT T C A T G A C CTCGGGA GTGTA AC CCTTTCCA A A GA G A
blockSeqs : . T TA . . T . . . . . . . . . A . . G A . . . . . . C . . G . T CTCGGGA GAG . . . A C . .
blockSeqs : . T AA . . . . . . . . . . . . . . . G A . . . . . . C . . G . C CTGT AAG . . . A . . .
blockSeqs : . C TC . . . . . . . . . . . . . . . G T . . . . . . A . . A . T TTG ATA . . . T . . .
blockSeqs : . A TA . . . . . . . . . . . . . . . C A . . . . . . A . . A . T CTG ATG . . . G . . .
blockSeqs : . A TA . . . . . . . . . . . . . . . A C . . . . . . C . . G . G CTC GTG . . . G . . .
blockSeqs : . T AA . . . . . . . . . . . . . . . T A . . . . . . C . . G . C TAA ACG . . . A . . .
blockSeqs : . G AT . . . . . . . . . . . . . . . A C . . . . . . T . . G . C CCC CTA . . . G . . .
blockSeqs : . C AT . . . . . . . . . . . . . . . G A . . . . . . A . . A . T CTG CCC . . . A . . .
blockSeqs : . C A . . . . . . . . . . . . . . . G G . . . . . . C . . A . C TC AAG . . . A . . .
blockSeqs : . C A . . . . . . . . . . . . . . . C G . . . . . . A . . A . T CT ATA . . . G . . .
blockSeqs : . C T . . . . . . . . . . . . . . . C A . . . . . . A . . A . T CC ATA . . . G . . .
blockSeqs : . . T . . . . . . . . . . . . . . . C A . . . . . . A . . A . G CC ATA . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . C C . . . . . . T . . G . T C ATA . . . . . .
blockSeqs : . . . . . . . . . . . . . . . G A . . . . . . C . . A . . T ATA . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . . . . . . C GA . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
finalCons : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|108718 ): ATTATTATACCTCAAGGGATAGACACGACGATTACTGAAATACGATTGGTTAAAACGATCACGTGATCAGGGCGACAAAACTTCATGTACCCCTCCCTCGGGACGTCGTGTACTGCATCCCCCGGGGAGCATCGCGTTTTTTCTTACGAGA
Alignments
lowQualScore : 11111 22222222
lowQualScore : 2 4 44444 2 2 88888 2 2 2 33 2 2 2 2 2 4 2 2 2 1 5555 2 2 2 33 2 3 2 2 1 2 5 00000000 77777 33 88888888 2 2 0 66 2 2
lowQualScore : . . ..... . . ..... . . . .. . . . . . . . . . . .... . . . .. . . . . . . . ........ ..... .. ........ . . . .. . .
lowQualScore : 9 6 11111 4 4 22222 4 4 4 22 2 2 2 2 2 7 4 2 2 4 0000 4 4 4 22 4 6 4 4 4 4 4 11111111 33333 22 55555555 4 5 5 33 7 9
consensus : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
Reference ( family-827 ) : TTATTATA-CCTCACTAT---TATAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCCT-C----CATCGTG--T--TCCACCCC--------TTCGGAAGC-CTCGTGCATTTT--CCC-GCAAGAGTT-ATCGTT
gi|108711 : TTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TAC--AT-ATCCCCCTCCAA-CAT-CATT-TCTCCCT-G----CATCAAG--T--TCCATCCC--------TTCGGAAGC-CTAATGCATTTT--CCC-GTAAGAGTT-ATCGTT
gi|108712 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTAAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-CGTA-TCTCCTT-G----CATCGAG--T--TCCACCCC--------TTTGGAAAC-CTCATGCATTTT--TTC-GCAAGAGTT-AACGTT
gi|108713 : aTTATTATAACCTCATTTT---AATAATT-CATTA-CA-CGT----CG-AAT-AAATCTGATGTGGTTC-A-GA-CA-G-TCA-CGTTGGTAGGG----AGGTACA-AA-C-TTC--GTTCTCCCCTTCCAA-GCT-CGTAATTTCCCTGT----CATCG-A--T--TCCACCCC--------TCGGAAAGC-CTCATGATTTTT--CTCGGCAAGAGTTAATCGTT
gi|108714 : aTTATTATA-CTTCATTAT---TCTAATT-CTATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CGT-GGAAGGG----AGG-ATA-AAAC-TTC--GA-GTCCCCCTCCAA-CAT-CGTA-TCTCCCT-G----CAACAAG--T--TCCACCCA--------TTCGGAAGC-TTCATGAATTTT--CCC-ACAAGAGTT-ATCGTT
gi|108715 : aTTATTATA-CCTCGCTAT---TACAATT-CCATA-CAACA-----CG-A-T-A--TCTGAT-TGGTCT-A-AA-CA-G-TCA-CGT-GGATGGG----AGG-ATA-AAAC-TTT--GT-ATCTCCCTCAAA-CAT-TAAA-TTTCC---C----CATCATA--T--T-----CC--------CTCGGAAGC-CTCTTGCATTTT--CCT-GCAAGAGTT-ATCATT
gi|108716 : aTTATTGTA-CCTCAATATAAATATA--T-TCATAACAGCA-----CGGA-T-A--TCTGAT-TGGTCCTA-GAACA-G-TCAACGT-GCTAGGG----AAA-ACA-AAAT-GGC--AT-GTCTCCTTCAAA-CAT-CATA-TTTTC-T-C----TATCATG--C--TCCACCCC--------TTCGGAAGT-CTCGTGCATTTT--CCC-GCAAGAGTT-ATAGTT
gi|108717 : aTTATTATA-CCTCAAGGG----ATAG-----ACA-CGACGATTATTG-A-A-A--TAAGAT-TGGTTG-A-G--CA-GATCA-CGT-GATCGGG----GCG-ACA-AAAC-TTC--AT-GTACCCCTCC---C-T-CG-G-TGTGCCT-CGGGACGTCGTG--TACTGCATCCC--------TCGGGGAGC-CTTGTGTTTTTT--CTT-ACAAGAGTT-ACTGTT
gi|108719 : aTTATTATA-CCTCATTAT---TATAATT-CCATA-TAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-AA-G-TCA-CGT-GTAAGGG----AGG-ACA-AAAC-TTC--GT-ATCCCCCTCCAA-CAT-TGTA-TCTCCCT-C----CATCACG--T--TCCACCCC--------TTCGGAAGC-CTCATGCA-TTT--CCC-ACAAGAGTT-ATCGTT
gi|108720 : TTATTATA-CCTCAGTTT---AATTATT-CTATG-CAGCA-----AA-G-A-A--TCTTAT-TGGTTC-ATGA-CA-T-TCA-CTT-GACCGGG----C----CATAAAT-ATC--AT-ATTTCCCTGT---CATTCGCA--CTTTTA-A----CATTCTA--T--TCCACCAC--------TTCGGATCCACTCG--CATTTT--ACC-GCAAGAGTT-ATCGTT
gi|108721 : TCATTACA-CCTCACTA--------A----CAGA-CAACG-----TG-A-T-A--TATGAT-TGGTCT-A-GA-CA-G-TTA-CGT-
gi|108722 : TATTATG-CCTCACTAT----ATAATT-CCATA-CAACG-----TG-A-TTA--TCTGAT-TGGTCC-A-GG-AA-G-TCA-TGT-GGA-TGG----AGG-ATA-AATC-TTT--GT-ATCTCC-TCAAA-CAT-CATA-TTCCCCC-C----CCCCCCC--C--CCCCCCCCCCTTTCCATTTGGAAGC-CTCATGCATTTT--CCC-GCAAGAATT-ATTGTT
gi|108723 : TATA-C-TCA-TAT---T-TAATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-CAAG-TCA-CGT-GGAAGGG----AGG-ACA-AAGC-TTC--GT-ATCCCC-TCCAA-CAT-C-TA-TCTCCCT-G----CATCAAG--T--TCCACACC--------TTCGGAAGC-CTCATGCATTTT--CCC-GCAAG
gi|108724 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-T-TACCT------CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108725 : TATA-TCTCACTGT---ATTAATT-CCATT-CAACG-----AG-A-T-A--TTTGAT-TGGTCT-A-GA-CT-G-TCA-CTT-GCAGGGG----AGG-ATA-AAGT-TTC--GT-AACTCCCTCAAA-CAT-CATA-TTAC----T----CATCATA--T--TCAACCCC--------TTCAAAAAC-
gi|108726 : ATAACT-CCATA-CAACT-----TG-A-T-A--TCTGAT-TGGTCT-A-GA-CA-G-TCA-CAA-ACAAGGGAATTAAG-ACA-AAACTTTT--GT-GTCTCTCTCAAA-AAT-CATG-TTTCCC--C----AATCATA--T--TCCACCCC--------TTCAGAAGC-CTTGTGCATTTTC-CCC-ACAAGAGTC-
gi|108727 : cttaatctgTAT---T-TAATTATCATG-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A-GA-TA-G-TCA-CGT-GCAAGGG----AGG-ACA-AAAC-TTC--GT-GTCTCCCTCTAA-CAT-CACA-T-TCC---C----CATCATA--A--TCCACCCC--------TTCGGAAGC-CTCGTGTTTTTG--CCA-GCAAGAGTT-ATCGTT
gi|108728 : aaATT-CCATA-CAACG-----CG-A-T-A--TCTGAT-TGGTCC-A--A-CA-
gi|108729 : GAT-TGGTTG-A--A-CG-GATCA-CGT-GGTCGGG----GCG-ACA-AAAC-TTCATGT-ACCCCTCTC------T-CGGA--GTGCCT-CGGGACATTGTGTAT--TGCATCCC--------TCGGGGAGC-CTC--GCGTTTTGACTT-ACGAGAGAT-AT
gi|108730 : T-GTAAGGG----AGA-ATA-AAAT-T----------CTCCTCCAAACAT-CAGA-TTTTCC--C----TATCATA--T--TC-------------------GAGT-CTCGTGC-TTTT--TCC-GCTAGAGTT-TTCGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|108718 ): ATTATTATACCTCAAGGGATAGACACGACGATTACTGAAATACGATTGGTTAAAACGATCACGTGATCAGGGCGACAAAACTTCATGTACCCCTCCCTCGGGACGTCGTGTACTGCATCCCCCGGGGAGCATCGCGTTTTTTCTTACGAGA