lowQualScore : 33333333333 1111 11111111111111 111111111
lowQualScore : 2 2 2 2 2 2 666 2 2 2 2 2 4 44444444444 22 2 555 2 2222 4 4 11111111111111 2 2 777 22 2 22 2 444444444 55555 2 2 4
lowQualScore : . . . . . . ... . . . . . . ........... .. . ... . .... . . .............. . . ... .. . .. . ......... ..... . . .
lowQualScore : 0 0 0 0 0 0 111 0 0 0 0 0 0 55555555555 88 0 555 0 8888 0 0 88888888888888 0 0 666 88 0 88 0 555555555 00000 0 0 4
consensus : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACC--AC-A--C-TTGAA-N--T--TC-----TA-T-GAA-TGCAATT
Reference ( gi|14677 ) : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACC--AC-A--C-TTGAA-A--T--TC-----TA-T-GAA-TGCAATT
gi|14680 : TATATT-TACA-T-A-T-CCGCT-ATC--CC-TCTA-TGC-T-ATGGCTAC-ATA-TC-----------T--A-T---CAA-T----TGC-AT-TAA--------------T-A-AC-TCGATGAATC--AC-A--C-TTGAA-A--T--TC-----TA-T-GAA-TGCAATT
gi|14672 : TATATT-TGCA-T-A-T-CCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GCTATGAATC--AC-A--C-TTGAA-T--A--TC-----TA-T-GAA-GGCAATT
gi|14681 : TAAATT-TGCA-T-A-T-CCACT-GTT--CC-TCTAATGC-T-ATGACTGA-ATA-TC-----------T--T-T---CAA-A----TGC-GT-TCA--------------T-A-AC-T--ATGAACC--AC-A--C-TTGAA-A--T--TC-----TA-T-GAA-TG
gi|14675 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACG--AC-A--T-TTGAT-T--A--TC-----TA-T-GAA-TGTAATT
gi|14674 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACG--AC-A--T-TTGAT-T--A--TC-----TA-T-GAA-TGTAATT
gi|14678 : TATATT-TGCA-T-A-T-TCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TT-----------T--A-T---CTA-T----TGC-GT-TCA--------------T-A-CA-TCTATGAGTC--AC-A--C----AC-A--TTATC-----TA-T-GAG-TGCAATT
gi|14683 : TATATT-TGCA-T-AAT-CCGCT-GTT--CC-TCTA-TGC-T-ATGACAGT-ATA-TC-----------C--ACT---CAA------TGC-GT-TCA--------------TCA-CC-TCTATGAATC--AC-A--C--TGAA-ATTT--TC-----TATT-GAT-TGCA
gi|14673 : TATAAT-TGCA-T-A-TTCCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-TAAACAA-T----TGC-GT-TCA--------------T-A-CCGGCTATGAATC--AC-A--CTTTGGA-A--TA-TC-----TA-T-GAA-GGCA
gi|14682 : TATATT-TGCA-T-A-A-CCACT-GTT--CC-TCTA-TGC-T-ATGACTAT-TTA-TC-----------T--A-T---CAA-T----TGC-GT-TTA--------------T-A-GC-GCTATGAATC--AC-A--A-TTGGT-T--T--TC-----TA-T-
gi|14676 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAATT----TGC-GT-T-A--------------T-A-CC-GTTAT-AACG--AC-A--T-TTGAT-T--A--TC-----TA-T-GAA-TGTAATT
gi|14685 : TATATT-TGCA-T-A-T-C-ACT-GTT--CC-TCTA--GCTT-ATGACTGC-ATA-TC-----------TTGA-TG--CAA-T----TGCGGTGTCA--------------T-ATCC-TCTATGAACA--ACTATTT-TTG-A-A--T--TCGAACGTA-T-GAA--GCACTT
gi|14679 : TATATTCTGCA-T-A-T-TCACTTGCA--TC-TCTA-TGC-T-ATGACTGC-ATATTT-----------T--A-T-----A-T----TGCTTT-TCA--------------T-A-CA-TCTATGAGTCAAAC-A--C-T--------T--TC-----TA-T-GAG-TG-AATT
gi|14684 : TATATT--GCA-TTA-T-C-ACT-GT----C-TCTA--GC-TCATGACTGCCATA-TCAAA--------T--A-----AAA-T----TGC-GT-TCA--------------T-A-CC-T-TATGAATC--AC----C-TTGAATT--T--TC-----TA-T-GAATTGCACTT
gi|14686 : ATATT-TGCA-T-A-T-CCACT-GTTTTCC-T-TA-TGC-T-ATGACTGC--TACTT-----------C--A-C---CAA-T----TGC-GT-TCA--------------T-A-TC-TCTATGAACC--AC-A--C-TCGAA-A--T--TC-----TA-C-GGATTGCGAT
gi|14687 : ATATT-TGCA-T-A-T-CCACT-GTT--TC-CTTC-TGC-T-ATGACTGC-ATA-CT-----------T--A-T---CAA-T----TGC-CA-TCA--------------T-A-TC-TCGATGAACC--AC-A--C-TCGAA-A--T--TC-----TA-T-
gi|14688 : TATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGATTGC-ACT-TCAGATGAG----T--G-T---CAG-TTAGATGT-GT-TCA--------------C-A-CC-T---TGAATC--AC-A--C-TTCTA-T--T--TC-----TA-A-TAA-TGAAATT
gi|14689 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCAGATGAG----T--G-T---CAG-TTAAATAT-GT-TCA--------------C-A-CC-T---TGAACC--AC-G--C-TTCTA-T--T--TC-----TA-A-GAA-TGCAATT
gi|14691 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATAACGGC-ATT-TCAGATGAG----T--G-T---CAG-TTAGATAT-GT-TTA--------------C-A-CC-T---TGAATC--AC-A--C-TTCTA-T--T--TC-----TA-A-GAA-TGCAGTT
gi|14690 : ATT-TGCA-T-A-C-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCA----------T--A-----CAA-G----TGT-ATGTCAGTTAGATATATGTTT-A-CA-TCT-TGAAAC--AC-A--C-ATCTA-T--G--TC-----TA-A-GAA-TGCAATT
gi|14692 : T-TGCACT-A-T-TCACT-GTT--CCCTCT--TGC-T-ATGACTGC-ATT-TCAGGATGAGTGTC--A-T---TAA-A----TAT-GT-TCA--------------C-A-CC-T---TGAACC--AC-G--C-TTTCT-A--T--TC-----TA-CAGAA-TGCAAT
Alignments
lowQualScore : 33333333333333 1111 11111111111111
lowQualScore : 1 1 1 1 1 1 555 1 1 1 1 1 3 11111111111111 1 777 1 2222 3 3 11111111111111 1 1 1 6 22 1 22 22 0 88888 44444 1 1 4
lowQualScore : . . . . . . ... . . . . . . .............. . ... . .... . . .............. . . . . .. . .. .. . ..... ..... . . .
lowQualScore : 9 9 9 9 9 9 333 9 9 9 9 9 8 55555555555555 9 111 9 1111 8 8 22222222222222 9 9 9 6 66 9 66 66 1 33333 88888 9 9 2
consensus : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACC--AC-A--CTT--GAA--TT-TC-----TA-T-GAA-TGCAATT
Reference ( family-824 ) : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACC--AC-A--CTT--GAA--NT-TC-----TA-T-GAA-TGCAATT
gi|14672 : TATATT-TGCA-T-A-T-CCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GCTATGAATC--AC-A--CTT--GAA--TA-TC-----TA-T-GAA-GGCAATT
gi|14673 : TATAAT-TGCA-T-A-TTCCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-TAAACAA-T----TGC-GT-TCA--------------T-A-CCGGCTATGAATC--AC-A--CTTTGGAA--TA-TC-----TA-T-GAA-GGCA
gi|14674 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACG--AC-A--TTT--GAT--TA-TC-----TA-T-GAA-TGTAATT
gi|14675 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACG--AC-A--TTT--GAT--TA-TC-----TA-T-GAA-TGTAATT
gi|14676 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAATT----TGC-GT-T-A--------------T-A-CC-GTTAT-AACG--AC-A--TTT--GAT--TA-TC-----TA-T-GAA-TGTAATT
gi|14677 : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACC--AC-A--CTT--GAA--AT-TC-----TA-T-GAA-TGCAATT
gi|14678 : TATATT-TGCA-T-A-T-TCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TT-----------T--A-T---CTA-T----TGC-GT-TCA--------------T-A-CA-TCTATGAGTC--AC-A--C----ACA--TTATC-----TA-T-GAG-TGCAATT
gi|14679 : TATATTCTGCA-T-A-T-TCACTTGCA--TC-TCTA-TGC-T-ATGACTGC-ATATTT-----------T--A-T-----A-T----TGCTTT-TCA--------------T-A-CA-TCTATGAGTCAAAC-A--CT---------T-TC-----TA-T-GAG-TG-AATT
gi|14680 : TATATT-TACA-T-A-T-CCGCT-ATC--CC-TCTA-TGC-T-ATGGCTAC-ATA-TC-----------T--A-T---CAA-T----TGC-AT-TAA--------------T-A-AC-TCGATGAATC--AC-A--CTT--GAA--AT-TC-----TA-T-GAA-TGCAATT
gi|14681 : TAAATT-TGCA-T-A-T-CCACT-GTT--CC-TCTAATGC-T-ATGACTGA-ATA-TC-----------T--T-T---CAA-A----TGC-GT-TCA--------------T-A-AC-T--ATGAACC--AC-A--CTT--GAA--AT-TC-----TA-T-GAA-TG
gi|14682 : TATATT-TGCA-T-A-A-CCACT-GTT--CC-TCTA-TGC-T-ATGACTAT-TTA-TC-----------T--A-T---CAA-T----TGC-GT-TTA--------------T-A-GC-GCTATGAATC--AC-A--ATT--GGT--TT-TC-----TA-T-
gi|14683 : TATATT-TGCA-T-AAT-CCGCT-GTT--CC-TCTA-TGC-T-ATGACAGT-ATA-TC-----------C--ACT---CAA------TGC-GT-TCA--------------TCA-CC-TCTATGAATC--AC-A--C-T--GAAATTT-TC-----TATT-GAT-TGCA
gi|14684 : TATATT--GCA-TTA-T-C-ACT-GT----C-TCTA--GC-TCATGACTGCCATA-TCAAA--------T--A-----AAA-T----TGC-GT-TCA--------------T-A-CC-T-TATGAATC--AC----CTT--GAAT-TT-TC-----TA-T-GAATTGCACTT
gi|14685 : TATATT-TGCA-T-A-T-C-ACT-GTT--CC-TCTA--GCTT-ATGACTGC-ATA-TC-----------TTGA-TG--CAA-T----TGCGGTGTCA--------------T-ATCC-TCTATGAACA--ACTATTTTT--GAA---T-TCGAACGTA-T-GAA--GCACTT
gi|14686 : ATATT-TGCA-T-A-T-CCACT-GTTTTCC-T-TA-TGC-T-ATGACTGC--TACTT-----------C--A-C---CAA-T----TGC-GT-TCA--------------T-A-TC-TCTATGAACC--AC-A--CTC--GAA--AT-TC-----TA-C-GGATTGCGAT
gi|14687 : ATATT-TGCA-T-A-T-CCACT-GTT--TC-CTTC-TGC-T-ATGACTGC-ATA-CT-----------T--A-T---CAA-T----TGC-CA-TCA--------------T-A-TC-TCGATGAACC--AC-A--CTC--GAA--AT-TC-----TA-T-
gi|14688 : TATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGATTGC-ACT-TCAGATGAG----T--G-T---CAG-TTAGATGT-GT-TCA--------------C-A-CC-T---TGAATC--AC-A--CTT--CTA--TT-TC-----TA-A-TAA-TGAAATT
gi|14689 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCAGATGAG----T--G-T---CAG-TTAAATAT-GT-TCA--------------C-A-CC-T---TGAACC--AC-G--CTT--CTA--TT-TC-----TA-A-GAA-TGCAATT
gi|14690 : ATT-TGCA-T-A-C-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TC--------------A-TA--CAA-G----TGT-ATGTCAGTTAGATATATGTTT-A-CA-TCT-TGAAAC--AC-A--CAT--CTA--TG-TC-----TA-A-GAA-TGCAATT
gi|14691 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATAACGGC-ATT-TCAGATGAG----T--G-T---CAG-TTAGATAT-GT-TTA--------------C-A-CC-T---TGAATC--AC-A--CTT--CTA--TT-TC-----TA-A-GAA-TGCAGTT
gi|14692 : T-TGCACT-A-T-TCACT-GTT--CCCTCT--TGC-T-ATGACTGC-ATT-TCAGGATGAGTGTC--A-T---TAA-A----TAT-GT-TCA--------------C-A-CC-T---TGAACC--AC-G--CTT--TCT--AT-TC-----TA-CAGAA-TGCAAT
Alignments
lowQualScore : 33333333333333 1111 11111111111111
lowQualScore : 1 1 1 1 1 1 555 1 1 1 1 1 3 11111111111111 1 777 1 2222 3 3 11111111111111 1 1 555 1 22 22 55555555 333 1 1 1 4
lowQualScore : . . . . . . ... . . . . . . .............. . ... . .... . . .............. . . ... . .. .. ........ ... . . . .
lowQualScore : 9 9 9 9 9 9 333 9 9 9 9 9 8 55555555555555 9 111 9 1111 8 8 22222222222222 9 9 111 9 66 66 33333333 333 9 9 9 2
consensus : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
Reference ( family-824 ) : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
gi|14672 : TATATT-TGCA-T-A-T-CCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GCTATGAATCAC-A--CTT--GAA--T---A-T---C-TA-T-GAA-GGCAATT
gi|14673 : TATAAT-TGCA-T-A-TTCCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-TAAACAA-T----TGC-GT-TCA--------------T-A-CCGGCTATGAATCAC-A--CTTTGGAA--T---A-T---C-TA-T-GAA-GGCA
gi|14674 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14675 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14676 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAATT----TGC-GT-T-A--------------T-A-CC-GTTAT-AACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14677 : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14678 : TATATT-TGCA-T-A-T-TCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TT-----------T--A-T---CTA-T----TGC-GT-TCA--------------T-A-CA-TCTATGAGTCAC-A--C----ACA--T---TAT---C-TA-T-GAG-TGCAATT
gi|14679 : TATATTCTGCA-T-A-T-TCACTTGCA--TC-TCTA-TGC-T-ATGACTGC-ATATTT-----------T--A-T-----A-T----TGCTTT-TCA--------------T-A-CA-TCTATGAGTCAA-A--C-----AC--T---T-T---C-TA-T-GAG-TG-AATT
gi|14680 : TATATT-TACA-T-A-T-CCGCT-ATC--CC-TCTA-TGC-T-ATGGCTAC-ATA-TC-----------T--A-T---CAA-T----TGC-AT-TAA--------------T-A-AC-TCGATGAATCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14681 : TAAATT-TGCA-T-A-T-CCACT-GTT--CC-TCTAATGC-T-ATGACTGA-ATA-TC-----------T--T-T---CAA-A----TGC-GT-TCA--------------T-A-A---CTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TG
gi|14682 : TATATT-TGCA-T-A-A-CCACT-GTT--CC-TCTA-TGC-T-ATGACTAT-TTA-TC-----------T--A-T---CAA-T----TGC-GT-TTA--------------T-A-GC-GCTATGAATCAC-A--ATT--GGT--T---T-T---C-TA-T-
gi|14683 : TATATT-TGCA-T-AAT-CCGCT-GTT--CC-TCTA-TGC-T-ATGACAGT-ATA-TC-----------C--ACT---CAA------TGC-GT-TCA--------------TCA-CC-TCTATGAATCAC-A--C-T--GAAATT---T-T---C-TATT-GAT-TGCA
gi|14684 : TATATT--GCA-TTA-T-C-ACT-GT----C-TCTA--GC-TCATGACTGCCATA-TCAAA--------T--A-----AAA-T----TGC-GT-TCA--------------T-A-CC-T-TATGAATCAC----CTT--GAAT-T---T-T---C-TA-T-GAATTGCACTT
gi|14685 : TATATT-TGCA-T-A-T-C-ACT-GTT--CC-TCTA--GCTT-ATGACTGC-ATA-TC-----------TTGA-TG--CAA-T----TGCGGTGTCA--------------T-ATCC-TCTATGAACAACTATTTTT--GAA--T---T-CGAACGTA-T-GAA--GCACTT
gi|14686 : ATATT-TGCA-T-A-T-CCACT-GTTTTCC-T-TA-TGC-T-ATGACTGC--TACTT-----------C--A-C---CAA-T----TGC-GT-TCA--------------T-A-TC-TCTATGAACCAC-A--CTC--GAA--A---T-T---C-TA-C-GGATTGCGAT
gi|14687 : ATATT-TGCA-T-A-T-CCACT-GTT--TC-CTTC-TGC-T-ATGACTGC-ATA-CT-----------T--A-T---CAA-T----TGC-CA-TCA--------------T-A-TC-TCGATGAACCAC-A--CTC--GAA--A---T-T---C-TA-T-
gi|14688 : TATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGATTGC-ACT-TCAGATGAG----T--G-T---CAG-TTAGATGT-GT-TCA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-TAA-TGAAATT
gi|14689 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCAGATGAG----T--G-T---CAG-TTAAATAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAATT
gi|14690 : ATT-TGCA-T-A-C-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TC--------------A-TA--CAA-G----TGT-ATGTCAGTTAGATATATGTTT-A-CA-TCT-TGAAACAC-A--CAT--CTA--T---G-T---C-TA-A-GAA-TGCAATT
gi|14691 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATAACGGC-ATT-TCAGATGAG----T--G-T---CAG-TTAGATAT-GT-TTA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAGTT
gi|14692 : T-TGCACT-A-T-TCACT-GTT--CCCTCT--TGC-T-ATGACTGC-ATT-TCAGGATGAGTGTC--A-T---TAA-A----TAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT-------TCTAT-T---C-TA-CAGAA-TGCAAT
Alignments
lowQualScore : 33333333333333 1111 11111111111111
lowQualScore : 1 1 1 1 1 1 555 1 1 1 1 1 3 11111111111111 1 777 1 2222 3 3 11111111111111 1 1 555 1 22 22 55555555 333 1 1 1 4
lowQualScore : . . . . . . ... . . . . . . .............. . ... . .... . . .............. . . ... . .. .. ........ ... . . . .
lowQualScore : 9 9 9 9 9 9 333 9 9 9 9 9 8 55555555555555 9 111 9 1111 8 8 22222222222222 9 9 111 9 66 66 33333333 333 9 9 9 2
consensus : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
Reference ( family-824 ) : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
gi|14672 : TATATT-TGCA-T-A-T-CCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GCTATGAATCAC-A--CTT--GAA--T---A-T---C-TA-T-GAA-GGCAATT
gi|14673 : TATAAT-TGCA-T-A-TTCCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-TAAACAA-T----TGC-GT-TCA--------------T-A-CCGGCTATGAATCAC-A--CTTTGGAA--T---A-T---C-TA-T-GAA-GGCA
gi|14674 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14675 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14676 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAATT----TGC-GT-T-A--------------T-A-CC-GTTAT-AACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14677 : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14678 : TATATT-TGCA-T-A-T-TCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TT-----------T--A-T---CTA-T----TGC-GT-TCA--------------T-A-CA-TCTATGAGTCAC-A--C----ACA--T---TAT---C-TA-T-GAG-TGCAATT
gi|14679 : TATATTCTGCA-T-A-T-TCACTTGCA--TC-TCTA-TGC-T-ATGACTGC-ATATTT-----------T--A-T-----A-T----TGCTTT-TCA--------------T-A-CA-TCTATGAGTCAA-A--C-----AC--T---T-T---C-TA-T-GAG-TG-AATT
gi|14680 : TATATT-TACA-T-A-T-CCGCT-ATC--CC-TCTA-TGC-T-ATGGCTAC-ATA-TC-----------T--A-T---CAA-T----TGC-AT-TAA--------------T-A-AC-TCGATGAATCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14681 : TAAATT-TGCA-T-A-T-CCACT-GTT--CC-TCTAATGC-T-ATGACTGA-ATA-TC-----------T--T-T---CAA-A----TGC-GT-TCA--------------T-A-A---CTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TG
gi|14682 : TATATT-TGCA-T-A-A-CCACT-GTT--CC-TCTA-TGC-T-ATGACTAT-TTA-TC-----------T--A-T---CAA-T----TGC-GT-TTA--------------T-A-GC-GCTATGAATCAC-A--ATT--GGT--T---T-T---C-TA-T-
gi|14683 : TATATT-TGCA-T-AAT-CCGCT-GTT--CC-TCTA-TGC-T-ATGACAGT-ATA-TC-----------C--ACT---CAA------TGC-GT-TCA--------------TCA-CC-TCTATGAATCAC-A--C-T--GAAATT---T-T---C-TATT-GAT-TGCA
gi|14684 : TATATT--GCA-TTA-T-C-ACT-GT----C-TCTA--GC-TCATGACTGCCATA-TCAAA--------T--A-----AAA-T----TGC-GT-TCA--------------T-A-CC-T-TATGAATCAC----CTT--GAAT-T---T-T---C-TA-T-GAATTGCACTT
gi|14685 : TATATT-TGCA-T-A-T-C-ACT-GTT--CC-TCTA--GCTT-ATGACTGC-ATA-TC-----------TTGA-TG--CAA-T----TGCGGTGTCA--------------T-ATCC-TCTATGAACAACTATTTTT--GAA--T---T-CGAACGTA-T-GAA--GCACTT
gi|14686 : ATATT-TGCA-T-A-T-CCACT-GTTTTCC-T-TA-TGC-T-ATGACTGC--TACTT-----------C--A-C---CAA-T----TGC-GT-TCA--------------T-A-TC-TCTATGAACCAC-A--CTC--GAA--A---T-T---C-TA-C-GGATTGCGAT
gi|14687 : ATATT-TGCA-T-A-T-CCACT-GTT--TC-CTTC-TGC-T-ATGACTGC-ATA-CT-----------T--A-T---CAA-T----TGC-CA-TCA--------------T-A-TC-TCGATGAACCAC-A--CTC--GAA--A---T-T---C-TA-T-
gi|14688 : TATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGATTGC-ACT-TCAGATGAG----T--G-T---CAG-TTAGATGT-GT-TCA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-TAA-TGAAATT
gi|14689 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCAGATGAG----T--G-T---CAG-TTAAATAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAATT
gi|14690 : ATT-TGCA-T-A-C-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TC--------------A-TA--CAA-G----TGT-ATGTCAGTTAGATATATGTTT-A-CA-TCT-TGAAACAC-A--CAT--CTA--T---G-T---C-TA-A-GAA-TGCAATT
gi|14691 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATAACGGC-ATT-TCAGATGAG----T--G-T---CAG-TTAGATAT-GT-TTA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAGTT
gi|14692 : T-TGCACT-A-T-TCACT-GTT--CCCTCT--TGC-T-ATGACTGC-ATT-TCAGGATGAGTGTC--A-T---TAA-A----TAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT-------TCTAT-T---C-TA-CAGAA-TGCAAT
blockSeqs : C C T A T T TTT C A T C C T AGGATGAGTGTC C AAA T TAGA T G GTTAGATATATGTT C T GGC T TT TG TCTAT GAA G T A T
blockSeqs : . . . . . . A . . . . . C AGATGAGT . G . TAAA G G . . . GT . . . ATTT . . . . T
blockSeqs : . . . . . . A . . . . . . AGATGAGT . A . TAGA . . . . . GT . . . TTA . . . . .
blockSeqs : . . . . . . A . . . . . . AGATGAGT . . . . . . . . . GT . . . TTT . . . . .
blockSeqs : . . . . . . A . . . . . . AAAT . . . . . . . . . TC . . . TA . . . . .
blockSeqs : . . . . . . T . . . . . . TTG . . . . . . . . . TC . . . TA . . . . .
blockSeqs : . . . . . . A . . . . . . A . . . . . . . . . TC . . . TA . . . . .
blockSeqs : . . . . . . A . . . . . . T . . . . . . . . . TC . . . TA . . . . .
blockSeqs : . . . . . . C . . . . . . T . . . . . . . . . GC . . . AT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . TC . . . TT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . TC . . . AT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . TC . . . AT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . TC . . . TT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . TC . . . TT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . C . . . AT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . T . . . AT . . . . .
blockSeqs : . . . . . . T . . . . . . C . . . . . . . . . T . . . TT . . . . .
blockSeqs : . . . . . . T . . . . . . C . . . . . . . . . T . . . TT . . . . .
blockSeqs : . . . . . . T . . . . . . T . . . . . . . . . T . . . TG . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . . . TT . . . .
blockSeqCons :
originalCons : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
finalCons : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
Alignments
lowQualScore : 33333333333333 1111 11111111111111
lowQualScore : 1 1 1 1 1 1 555 1 1 1 1 1 3 11111111111111 1 777 1 2222 3 3 11111111111111 1 1 555 1 22 22 55555555 333 1 1 1 4
lowQualScore : . . . . . . ... . . . . . . .............. . ... . .... . . .............. . . ... . .. .. ........ ... . . . .
lowQualScore : 9 9 9 9 9 9 333 9 9 9 9 9 8 55555555555555 9 111 9 1111 8 8 22222222222222 9 9 111 9 66 66 33333333 333 9 9 9 2
consensus : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
Reference ( family-824 ) : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--T---T-T---C-TA-T-GAA-TGCAATT
gi|14672 : TATATT-TGCA-T-A-T-CCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GCTATGAATCAC-A--CTT--GAA--T---A-T---C-TA-T-GAA-GGCAATT
gi|14673 : TATAAT-TGCA-T-A-TTCCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------A--A-TAAACAA-T----TGC-GT-TCA--------------T-A-CCGGCTATGAATCAC-A--CTTTGGAA--T---A-T---C-TA-T-GAA-GGCA
gi|14674 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14675 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-GTTATGAACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14676 : TATATT-CGCA-T-A-T-CCACT-GTA--TC-TCTA-TGC-T-ATGACTGT-ATG-TC-----------T--A-T---CAATT----TGC-GT-T-A--------------T-A-CC-GTTAT-AACGAC-A--TTT--GAT--T---A-T---C-TA-T-GAA-TGTAATT
gi|14677 : TATATT-TGCA-T-A-T-CCACT-GTT--CC-TCTA-TGC-T-ATGACTGC-ATA-TC-----------T--A-T---CAA-T----TGC-GT-TCA--------------T-A-CC-TCTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14678 : TATATT-TGCA-T-A-T-TCACT-GCA--TC-TCTA-TGC-T-ATGACTGC-ATA-TT-----------T--A-T---CTA-T----TGC-GT-TCA--------------T-A-CA-TCTATGAGTCAC-A--C----ACA--T---TAT---C-TA-T-GAG-TGCAATT
gi|14679 : TATATTCTGCA-T-A-T-TCACTTGCA--TC-TCTA-TGC-T-ATGACTGC-ATATTT-----------T--A-T-----A-T----TGCTTT-TCA--------------T-A-CA-TCTATGAGTCAA-A--C-----AC--T---T-T---C-TA-T-GAG-TG-AATT
gi|14680 : TATATT-TACA-T-A-T-CCGCT-ATC--CC-TCTA-TGC-T-ATGGCTAC-ATA-TC-----------T--A-T---CAA-T----TGC-AT-TAA--------------T-A-AC-TCGATGAATCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TGCAATT
gi|14681 : TAAATT-TGCA-T-A-T-CCACT-GTT--CC-TCTAATGC-T-ATGACTGA-ATA-TC-----------T--T-T---CAA-A----TGC-GT-TCA--------------T-A-A---CTATGAACCAC-A--CTT--GAA--A---T-T---C-TA-T-GAA-TG
gi|14682 : TATATT-TGCA-T-A-A-CCACT-GTT--CC-TCTA-TGC-T-ATGACTAT-TTA-TC-----------T--A-T---CAA-T----TGC-GT-TTA--------------T-A-GC-GCTATGAATCAC-A--ATT--GGT--T---T-T---C-TA-T-
gi|14683 : TATATT-TGCA-T-AAT-CCGCT-GTT--CC-TCTA-TGC-T-ATGACAGT-ATA-TC-----------C--ACT---CAA------TGC-GT-TCA--------------TCA-CC-TCTATGAATCAC-A--C-T--GAAATT---T-T---C-TATT-GAT-TGCA
gi|14684 : TATATT--GCA-TTA-T-C-ACT-GT----C-TCTA--GC-TCATGACTGCCATA-TCAAA--------T--A-----AAA-T----TGC-GT-TCA--------------T-A-CC-T-TATGAATCAC----CTT--GAAT-T---T-T---C-TA-T-GAATTGCACTT
gi|14685 : TATATT-TGCA-T-A-T-C-ACT-GTT--CC-TCTA--GCTT-ATGACTGC-ATA-TC-----------TTGA-TG--CAA-T----TGCGGTGTCA--------------T-ATCC-TCTATGAACAACTATTTTT--GAA--T---T-CGAACGTA-T-GAA--GCACTT
gi|14686 : ATATT-TGCA-T-A-T-CCACT-GTTTTCC-T-TA-TGC-T-ATGACTGC--TACTT-----------C--A-C---CAA-T----TGC-GT-TCA--------------T-A-TC-TCTATGAACCAC-A--CTC--GAA--A---T-T---C-TA-C-GGATTGCGAT
gi|14687 : ATATT-TGCA-T-A-T-CCACT-GTT--TC-CTTC-TGC-T-ATGACTGC-ATA-CT-----------T--A-T---CAA-T----TGC-CA-TCA--------------T-A-TC-TCGATGAACCAC-A--CTC--GAA--A---T-T---C-TA-T-
gi|14688 : TATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGATTGC-ACT-TCAGATGAG----T--G-T---CAG-TTAGATGT-GT-TCA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-TAA-TGAAATT
gi|14689 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TCAGATGAG----T--G-T---CAG-TTAAATAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAATT
gi|14690 : ATT-TGCA-T-A-C-TCACT-GTT--CC-TCTC-TGC-T-ATGACTGC-ATT-TC--------------A-TA--CAA-G----TGT-ATGTCAGTTAGATATATGTTT-A-CA-TCT-TGAAACAC-A--CAT--CTA--T---G-T---C-TA-A-GAA-TGCAATT
gi|14691 : ATT-TGCA-T-A-T-TCACT-GTT--CC-TCTC-TGC-T-ATAACGGC-ATT-TCAGATGAG----T--G-T---CAG-TTAGATAT-GT-TTA--------------C-A-CC-T---TGAATCAC-A--CTT--CTA--T---T-T---C-TA-A-GAA-TGCAGTT
gi|14692 : T-TGCACT-A-T-TCACT-GTT--CCCTCT--TGC-T-ATGACTGC-ATT-TCAGGATGAGTGTC--A-T---TAA-A----TAT-GT-TCA--------------C-A-CC-T---TGAACCAC-G--CTT-------TCTAT-T---C-TA-CAGAA-TGCAAT