lowQualScore : 11
lowQualScore : 0 11 5 1 4 44 2 1 1 1 999 8888 55555 88 4 2 88 22 333 22 9 22 88 2
lowQualScore : . .. . . . .. . . . . ... .... ..... .. . . .. .. ... .. . .. .. .
lowQualScore : 6 44 4 5 4 11 3 5 5 5 666 2222 00000 77 0 0 22 88 555 88 1 88 22 0
consensus : GACGGAACCGAGNTTTATACACA-C-TCGCAATCC--CAGG-A-TCT-GGACG-A-A-CT-G-----AG-NTT-T-AT--AC--A---C--TCACA--A--TCCCAGG-ATCTGGA
Reference ( gi|42819 ) : GACGAAACTAAGATTTATACACA-C-TCACAATCC--CAGG-A-TCT-GGACG-G-A-CT-G-----AG-TTT-T-AT--AC--A---C--TCTCA--A--TCCCAGG-ATCTGGA
gi|42820 : GACGAAACTAAGATTTATACACA-C-TCACAATCC--CAGG-A-TCT-GGACG-G-A-CT-G-----AG-TTT-T-AT--AC--A---C--TCTCA--A--TCCCAGG-ATCTGGA
gi|42822 : GACGAAACTAAGATTTATACACA-C-TCACAATCC---AGG-A-TCT-GGACG-G-A-CT-G-----AG-TTT-T-AT--AC--A---C--TCTCA--A--TCCCAGG-ATCTG
gi|42827 : GACGGAACGGAGATTTAT--ACA-C-TCAAAATCC--TACA-A-TCT-GGA
gi|42828 : gagatttatacacactcacaattccaggatctgGACGGAACGGAGATTTAT--ACA-C-TCAAAATCC--TACA-A-TCT-GGA
gi|42821 : tttatacacactcacaattccaggatctgGACGGAGC-AAGTTCTATACACA-C-TCA--ATCC--CATC-A-TCT-TGACA-G-A-CC-G-----AG-TTT-T-AT--ACAAA---C--TCACA--A--TCCCAGG-ATCTGG
gi|42823 : GAC-AGACCGAGTTTTATACAAAAC-TCACAATCC----AG-A-TCT-GGGCG-G-A-CC-G-----AG-TTT-TCAT--AC--AAACC--TCGCA--A--TCCCAGGAATCTGGA
gi|42813 : GACGAAACTAAGATTTATACACA-C-TCACAATCC--CAGG-A-TCT-GGA
gi|42817 : ggcggaccgagttttcatacaaacctcgcaatcccaggaatctgGAAGGAAC-GAGCTTCATACAAA-C-TCGCAATCC--CAGG-A-TCTCGGAAG-A-A-ATAG-----AA-TTTAT-AC--AC--A---C--TCACA--A--TTCCAGG-ATCTGGA
gi|42816 : GAAGGAAC-GAGCTTCATACAAA-C-TCGCAATCC--CAGG-A-TCT-CGAAG-A-A-ATAG-----AG-ATT-T-ATACAC--A---C--TCACA--A--TTCCAGG-ATCTGGA
gi|42824 : GACGAA-CTGAGTTTTATACAC----TCAAAATCC--CAGG-A-TCT-GGACG-G-G-CC-GAGTCTAG-TTT-T-AT--AC--A---CATTCACA--A--CTTCACA-ATATGGA
gi|42814 : GACGAAACTAAGATTTATACACA-C-TCACAAT-C--CAGG-A-TCT-GGA
gi|42811 : ggcggaccgagttttcatacaaacctcgcaatcccaggaatctgGACGAAACGGAGATTTATACACA-C-TCAAAATCC--CACG-A-TCT-GGA
gi|42811 : gacggactgagttttatacaaactcgcgtgGACGGA-CTGAGTTTTATACAAA-C-TCGCG---------------T-GGACG-A-AACG-G-----AG-ATT-T-AT--AC--A---C--ACTCA--AAATCCCACG-ATCTGGA
gi|42810 : GACGAAACGGAGATTTATACACA-C-TCAAAATCC--CACG-A-TCT-GGA
gi|42810 : gacggactgagttttatacaaactcgcgtgGACGGA-CTGAGTTTTATACAAA-C-TCGCG---------------T-GGACG-A-AACG-G-----AG-ATT-T-AT--AC--A---C--ACTCA--AAATCCCACG-ATCTGGA
gi|42809 : GACGAAACGGAGATTTATACACA-C-TCAAAATCC--CACG-A-TCT-GGA
gi|42809 : gacggactgagttttatacaaactcgcgtgGACGGA-CTGAGTTTTATACAAA-C-TCGCG---------------T-GGACG-A-AACG-G-----AG-ATT-T-AT--AC--A---C--ACTCA--AAATCCCACG-ATCTGGA
gi|42818 : GAAGGAAC-GAGCTTCATACAAA-CGTCGCAATCC----AG-A-TCT-CGAAG-A-A-ATAG-----AA-TTTAT-AC--AC--A---C--TCACA--A--TTCCAGG-ATCTGGA
gi|42815 : ACCGAGTTTTATACACA-C-TCA--ATCC--CACG-A-TCT-AGACG-A-A-CT-G-----AG-TTT-T-AT--AC--A---C--TCAAA--A--TCCCAGG-ATCTGGA
gi|42812 : gatggACCGAGTTTCATACAAA-C-TCGCAATCC--CAGG-A-TCT-GGACGAA-A-CT-A-----AG-ATT-T-ATACAC--A---C--TCACA--A--TCCCAGG-ATCTGGA
gi|42826 : ggcggACCGAGTTTTATACACA-C-T--CAATCCCACACG-A-TCT-AGACG-A-A-CT-G-----AGTTTT-T-AT--AC--A---C--TCAAA--A--TCCCAGG-ATCTGGA
gi|42825 : gACCGAGTTTTATACACA-C-T--CAATCCCACACG-A-TCT-AGACG-A-A-CT-G-----AGTTTT-T-AT--AC--A---C--TCAAA--A--TCCCAGG-ATCTGGA
gi|42827 : ggAGATTTATACACA-C-TCACAATTC--CAGG-A-TCT-GGACG-GAA-CG-G-----AG-ATT-T-AT--AC--A---C--TCAAA--A--TCCTACA-ATCTGGA
gi|42829 : gTTTATACACA-C-TCACAATTC--CAGG-A-TCT-GGACG-GAA-CG-G-----AGATTT-T-AT--AC--A---C--TCAAA--A--TCCTACA-ATCTGGA
gi|42828 : TTTATACACA-C-TCACAATTC--CAGG-A-TCT-GGACG-GAA-CG-G-----AG-ATT-T-AT--AC--A---C--TCAAA--A--TCCTACA-ATCTGGA
gi|42813 : TTCATACAAA-CCTCGCAATCC--CAGG-AATCT-GGACG-A-AACT-A-----AG-ATT-T-AT--AC--A---C--ACTCACAA--TCCCAGG-ATCTGGA
gi|42814 : ggcggaccgagttTTCATACAAA-CCTCGCAATCC--CAGGAA-TCT-GGACGAA-A-CT-A-----AG-ATT-T-ATACAC--A---C--TCACA--A--T-CCAGG-ATCTGGA
Alignments
lowQualScore : 1 11 11
lowQualScore : 3 7 1 3 1 1 5 3 666 1 1 1 5 3 7 1 44444 66 1 00 22 333 55 0 1
lowQualScore : . . . . . . . . ... . . . . . . . ..... .. . .. .. ... .. . .
lowQualScore : 6 3 0 8 9 9 7 2 000 9 9 9 7 8 6 9 88888 77 9 55 66 333 77 7 9
consensus : GACGGAACCGAGTTTT-ATACACA-C-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
Reference ( family-822 ) : GACGGAACCGAGNTTT-ATACACA-C-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42809 : GACGGA-CTGAGTTTT-ATACAAA-C-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42810 : GACGGA-CTGAGTTTT-ATACAAA-C-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42811 : GACGGA-CTGAGTTTT-ATACAAA-C-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42812 : GGCGGA-CCGAGTTTC-ATACAAA-C-TCGCAATCC--CAGG-A-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42813 : GGCGGA-CCGAGTTTTCATACAAA-CCTCGCAATCC--CAGG-AATCT-GGAC-G-AAACT-A-----AG-ATTT-AT--AC--A---CACTCACAATCCCAGG-ATCTGGA
gi|42814 : GGCGGA-CCGAGTTTTCATACAAA-CCTCGCAATCC--CAGGAA-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAAT-CCAGG-ATCTGGA
gi|42815 : GATGGA-CCGAGTTTT-ATACACA-C-TC--AATCC--CACG-A-TCT-AGAC-G-AA-CT-G-----AG-TTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42816 : GAAGGAAC-GAGCTTC-ATACAAA-C-TCGCAATCC--CAGG-A-TCT-CGAA-G-AA-ATAG-----AG-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42817 : GAAGGAAC-GAGCTTC-ATACAAA-C-TCGCAATCC--CAGG-A-TCTCGGAA-G-AA-AT-A-----GA-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42818 : GAAGGAAC-GAGCTTC-ATACAAA-CGTCGCAATCC----AG-A-TCT-CGAA-G-AA-AT-A-----GA-ATTT-AT--AC--A---CACTCACAATTCCAGG-ATCTGGA
gi|42819 : GACGAAACTAAGATTT-ATACACA-C-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42820 : GACGAAACTAAGATTT-ATACACA-C-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42821 : GACGGAGC-AAGTTCT-ATACACA-C-TC--AATCC--CATC-A-TCT-TGAC-A-GA-CC-G-----AG-TTTT-AT--ACAAA---C--TCACAATCCCAGG-ATCTGG
gi|42822 : GACGAAACTAAGATTT-ATACACA-C-TCACAATCC---AGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTG
gi|42823 : GACAGA-CCGAGTTTT-ATACAAAAC-TCACAATCC----AG-A-TCT-GGGC-G-GA-CC-G-----AG-TTTTCAT--AC--AAACC--TCGCAATCCCAGGAATCTGGA
gi|42824 : GACG-AACTGAGTTTT-ATACAC----TCAAAATCC--CAGG-A-TCT-GGAC-G-GG-CC-GAGTCTAG-TTTT-AT--AC--A---CATTCACAACTTCACA-ATATGGA
gi|42825 : GGACCGAGTTTT-ATACACA-C-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42826 : ACCGAGTTTT-ATACACA-C-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42827 : gGAGATTT-ATACACA-C-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42828 : TTT-ATACACA-C-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42829 : TTT-ATACACA-C-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AGATTTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
Alignments
lowQualScore : 1 11 11
lowQualScore : 3 7 3 1 1 5 3 666 1 1 1 5 3 7 1 44444 66 1 00 22 333 55 0 1
lowQualScore : . . . . . . . ... . . . . . . . ..... .. . .. .. ... .. . .
lowQualScore : 6 3 8 9 9 7 2 000 9 9 9 7 8 6 9 88888 77 9 55 66 333 77 7 9
consensus : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
Reference ( family-822 ) : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42809 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42810 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42811 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42812 : GGCGGA-CCGAGTTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42813 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGG-AATCT-GGAC-G-AAACT-A-----AG-ATTT-AT--AC--A---CACTCACAATCCCAGG-ATCTGGA
gi|42814 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGGAA-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAAT-CCAGG-ATCTGGA
gi|42815 : GATGGA-CCGAGTTTT-ATAC-ACAC-TC--AATCC--CACG-A-TCT-AGAC-G-AA-CT-G-----AG-TTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42816 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-CGAA-G-AA-ATAG-----AG-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42817 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCTCGGAA-G-AA-AT-A-----GA-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42818 : GAAGGAAC-GAGCTTC-ATAC-AAACGTCGCAATCC----AG-A-TCT-CGAA-G-AA-AT-A-----GA-ATTT-AT--AC--A---CACTCACAATTCCAGG-ATCTGGA
gi|42819 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42820 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42821 : GACGGAGC-AAGTTCT-ATAC-ACAC-TC--AATCC--CATC-A-TCT-TGAC-A-GA-CC-G-----AG-TTTT-AT--ACAAA---C--TCACAATCCCAGG-ATCTGG
gi|42822 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC---AGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTG
gi|42823 : GACAGA-CCGAGTTTT-ATACAAAAC-TCACAATCC----AG-A-TCT-GGGC-G-GA-CC-G-----AG-TTTTCAT--AC--AAACC--TCGCAATCCCAGGAATCTGGA
gi|42824 : GACG-AACTGAGTTTT-ATAC-AC---TCAAAATCC--CAGG-A-TCT-GGAC-G-GG-CC-GAGTCTAG-TTTT-AT--AC--A---CATTCACAACTTCACA-ATATGGA
gi|42825 : GGACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42826 : ACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42827 : gGAGATTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42828 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42829 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AGATTTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
Alignments
lowQualScore : 1 11 11
lowQualScore : 3 7 3 1 1 5 3 666 1 1 1 5 3 7 1 44444 66 1 00 22 333 55 0 1
lowQualScore : . . . . . . . ... . . . . . . . ..... .. . .. .. ... .. . .
lowQualScore : 6 3 8 9 9 7 2 000 9 9 9 7 8 6 9 88888 77 9 55 66 333 77 7 9
consensus : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
Reference ( family-822 ) : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42809 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42810 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42811 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42812 : GGCGGA-CCGAGTTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42813 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGG-AATCT-GGAC-G-AAACT-A-----AG-ATTT-AT--AC--A---CACTCACAATCCCAGG-ATCTGGA
gi|42814 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGGAA-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAAT-CCAGG-ATCTGGA
gi|42815 : GATGGA-CCGAGTTTT-ATAC-ACAC-TC--AATCC--CACG-A-TCT-AGAC-G-AA-CT-G-----AG-TTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42816 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-CGAA-G-AA-ATAG-----AG-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42817 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCTCGGAA-G-AA-AT-A-----GA-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42818 : GAAGGAAC-GAGCTTC-ATAC-AAACGTCGCAATCC----AG-A-TCT-CGAA-G-AA-AT-A-----GA-ATTT-AT--AC--A---CACTCACAATTCCAGG-ATCTGGA
gi|42819 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42820 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42821 : GACGGAGC-AAGTTCT-ATAC-ACAC-TC--AATCC--CATC-A-TCT-TGAC-A-GA-CC-G-----AG-TTTT-AT--ACAAA---C--TCACAATCCCAGG-ATCTGG
gi|42822 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC---AGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTG
gi|42823 : GACAGA-CCGAGTTTT-ATACAAAAC-TCACAATCC----AG-A-TCT-GGGC-G-GA-CC-G-----AG-TTTTCAT--AC--AAACC--TCGCAATCCCAGGAATCTGGA
gi|42824 : GACG-AACTGAGTTTT-ATAC-AC---TCAAAATCC--CAGG-A-TCT-GGAC-G-GG-CC-GAGTCTAG-TTTT-AT--AC--A---CATTCACAACTTCACA-ATATGGA
gi|42825 : GGACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42826 : ACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42827 : gGAGATTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42828 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42829 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AGATTTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
blockSeqs : A T C A A C G CAC A A C G A A A AGTCT TT C AC AA AAC AC A
blockSeqs : A T C . A C G CAC . . . G A A . . TT . AC . . AC .
blockSeqs : A C . . A G G C . . . G . A . . AT . AC . . AC .
blockSeqs : A C . . A . G C . . . . . . . . A . AC . . AC .
blockSeqs : A C . . A . G C . . . . . . . . A . . . . AT .
blockSeqs : G C . . C . G C . . . . . . . . A . . . . . .
blockSeqs : A T . . A . G C . . . . . . . . A . . . . . .
blockSeqs : A T . . A . G C . . . . . . . . A . . . . . .
blockSeqs : A T . . A . A C . . . . . . . . T . . . . . .
blockSeqs : A C . . C . A C . . . . . . . . A . . . . . .
blockSeqs : . T . . C . A C . . . . . . . . A . . . . . .
blockSeqs : . C . . C . A C . . . . . . . . A . . . . . .
blockSeqs : . C . . C . A C . . . . . . . . T . . . . . .
blockSeqs : . . . . A . A C . . . . . . . . T . . . . . .
blockSeqs : . . . . C . A C . . . . . . . . T . . . . . .
blockSeqs : . . . . C . A . . . . . . . . . T . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . T . . . . . .
blockSeqs : . . C . . . . . . . . . . . T . . . . . .
blockSeqs : . . C . . . . . . . . . . . A . . . . . .
blockSeqs : . . C . . . . . . . . . . . A . . . . . .
blockSeqCons : C** **
originalCons : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
finalCons : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCCC--AGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
Alignments
lowQualScore : 1 11 11
lowQualScore : 3 7 3 1 1 5 3 666 1 1 1 5 3 7 1 44444 66 1 00 22 333 55 0 1
lowQualScore : . . . . . . . ... . . . . . . . ..... .. . .. .. ... .. . .
lowQualScore : 6 3 8 9 9 7 2 000 9 9 9 7 8 6 9 88888 77 9 55 66 333 77 7 9
consensus : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
Reference ( family-822 ) : GACGGAACCGAGTTTT-ATAC-ACAC-TCGCAATCC--CAGG-A-TCT-GGAC-G-AA-CT-G-----AG-NTTT-AT--AC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42809 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42810 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42811 : GACGGA-CTGAGTTTT-ATAC-AAAC-TCGCG---------------T-GGAC-G-AAACG-G-----AG-ATTT-AT--AC--A---CACTCAAAATCCCACG-ATCTGGA
gi|42812 : GGCGGA-CCGAGTTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAATCCCAGG-ATCTGGA
gi|42813 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGG-AATCT-GGAC-G-AAACT-A-----AG-ATTT-AT--AC--A---CACTCACAATCCCAGG-ATCTGGA
gi|42814 : GGCGGA-CCGAGTTTTCATAC-AAACCTCGCAATCC--CAGGAA-TCT-GGAC-GAAA-CT-A-----AG-ATTT-ATACAC--A---C--TCACAAT-CCAGG-ATCTGGA
gi|42815 : GATGGA-CCGAGTTTT-ATAC-ACAC-TC--AATCC--CACG-A-TCT-AGAC-G-AA-CT-G-----AG-TTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42816 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCT-CGAA-G-AA-ATAG-----AG-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42817 : GAAGGAAC-GAGCTTC-ATAC-AAAC-TCGCAATCC--CAGG-A-TCTCGGAA-G-AA-AT-A-----GA-ATTT-ATACAC--A---C--TCACAATTCCAGG-ATCTGGA
gi|42818 : GAAGGAAC-GAGCTTC-ATAC-AAACGTCGCAATCC----AG-A-TCT-CGAA-G-AA-AT-A-----GA-ATTT-AT--AC--A---CACTCACAATTCCAGG-ATCTGGA
gi|42819 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42820 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC--CAGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTGGA
gi|42821 : GACGGAGC-AAGTTCT-ATAC-ACAC-TC--AATCC--CATC-A-TCT-TGAC-A-GA-CC-G-----AG-TTTT-AT--ACAAA---C--TCACAATCCCAGG-ATCTGG
gi|42822 : GACGAAACTAAGATTT-ATAC-ACAC-TCACAATCC---AGG-A-TCT-GGAC-G-GA-CT-G-----AG-TTTT-AT--AC--A---C--TCTCAATCCCAGG-ATCTG
gi|42823 : GACAGA-CCGAGTTTT-ATACAAAAC-TCACAATCC----AG-A-TCT-GGGC-G-GA-CC-G-----AG-TTTTCAT--AC--AAACC--TCGCAATCCCAGGAATCTGGA
gi|42824 : GACG-AACTGAGTTTT-ATAC-AC---TCAAAATCC--CAGG-A-TCT-GGAC-G-GG-CC-GAGTCTAG-TTTT-AT--AC--A---CATTCACAACTTCACA-ATATGGA
gi|42825 : GGACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42826 : ACCGAGTTTT-ATAC-ACAC-T--CAATCCCACACG-A-TCT-AGAC-G-AA-CT-G-----AGTTTTT-AT--AC--A---C--TCAAAATCCCAGG-ATCTGGA
gi|42827 : gGAGATTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42828 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AG-ATTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA
gi|42829 : TTT-ATAC-ACAC-TCACAATTC--CAGG-A-TCT-GGACGG-AA-CG-G-----AGATTTT-AT--AC--A---C--TCAAAATCCTACA-ATCTGGA