lowQualScore                  :                22                                                                                     
lowQualScore                  :            3   11      2        6   777 2   77      0  4      2     2   2  6   2 2     2            6 
lowQualScore                  :            .   ..      .        .   ... .   ..      .  .      .     .   .  .   . .     .            . 
lowQualScore                  :            6   44      7        7   333 7   99      1  4      0     0   2  5   2 2     2            0 
consensus                     : AAAATTGGTTG-TTTTTACGTTG-AAAAGACGTCAG---G-TGT--ACGTTAGGT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTTGACG
Reference ( gi|112521 )       : AAAATTGGTTG-TTTC-ACGTTG-AAAAGACGCCAG---G-TGT--ACGTTAGAT-TGACGT-CTTTT-CTT-GGCTGT-A-TTTGC-AAATTGTTTTGATG
gi|112519                     : AAAATTGGTTG-TTTTTGCGTTG-AAAAGACGTCAG---G-TGT--ACGTTAAAT-TGACGT-CTTTT-CTT-GGTGGT-A-TTTGC-AAATTGTTCTGAC
gi|112520                     : AAAATTGGTTG-TTTTTACGTTG-AAAAGACGAAAG---G-TGT--ACGTCAGGT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTCTTTTGAC
gi|112523                     : AAAATTGGTCG-TTTTTGCGCTG-AAAAGACTTCGG---G-TGT--ACGTTAGAT-TGACGT-ATTTT-CTT-GATTGT-A-TTTGC-AAATTGTTTtc
gi|112522                     : AAAATTGGTTGTTTTT-ACGTTG-AAATG-CGTCAG---G-TGT--ACGTTTGGT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAGTT-TTTTGACgacgtc
gi|112524                     : AAAATTGTTT--TTTT-ACGTTGGAAAAGACATCAG---GGTGTTTACGTTAGGT-TG-CGC-GTGTT-CTT-GGTTGT-T-TTTGC-ATATTGGTTTGACtc
gi|112525                     : aAAATTGGTTG-TTTTTATGTTG-AAAAGACACCAG---G-TGT--ACGTTAGGT-TGACGG-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTtc
gi|112527                     :       GGTTT-TTTT-ACGTTG-AAAAGACGTCAG---A-TAT--ACGTTAGGT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGT-AAATTGTTTTGAacctgacgtc
gi|112528                     :       GGTTG-TTTTTACGTTG-AAAAGA-----------TGT--ACGTTAGGC-TGACGT-CTTTT-CTT-GGTTGT-ATTTTTC-AAATTGGTTTGACc
gi|112526                     :            -TTTT-ACGTTG-AAAAGAAGTTAG---G-TGT--CCGTTAGGT-TGACGT-CTTTT-CTT-G--TGTAA-TTTGC-AAA-TGTTTTG
gi|112530                     :      gtgggt-TTTT-ACGTTG-AAAAGACGTCAA---G-TGT--ACGTTA-AT-Tcgatgtc
gi|112529                     :            -TTTT-ACGTTG-AAAAGACGTCAA---G-TGT--ACGTTA-AT-T
gi|112531                     :                 -ACGTTG-AAAAGACGTTAGA--G-TGTG-ACGTTAGAT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGA-AAATTGTTTTGAC
gi|112532                     :                 -ACGTTG-AAAAGACTGTAGAGTG-TGTG-ACGTTAGAT-TGACGT-CTTTT-CTT-GGTTGT-A--TTGA-AAATTGTTTTGACtc
gi|112519                     :                       G-AAAAGACGTCAA---T-TTA--ACGT-ACACCTGACGT-CTTTT-Ctc
gi|112527                     :  aaaattggttgtttttgcgttG-AAAAGACGTCAA---C-CTA--ACGT-ATATCTGACGT-CTTTT-Cttggtggtatttgcaaattgttctgacg
gi|112533                     :                               ggtttttttacgtt--ACGTTAGAT-TGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTTGAttggttgtatttgtaaattgttttgac
gi|112534                     :                                             --ACGTTAGAT-TGACGTGCTTTT-CTTTGGTTGT-A-TTTGC-AAATTGTTTT
gi|112535                     :                                                  TTAAGT-TGACGT-TTTTTTCTT-GGTTGT-T-TTTGC-AAATTGTTTTGAC
gi|112537                     :                                                           ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTTGACtc
gi|112536                     :                                                           ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTTGACtc
gi|112538                     :                                                           ACGT-CTTTT-CTA-GGTTGT-A-TTTGC-AAATTGTTTTGACtc
gi|112539                     :                                                           ACGT-CTTTT-CT--AGTTGT-A-TTTGCAAAATTGTTTTGACtc





Alignments
lowQualScore                  :                                           111                                                          
lowQualScore                  :                       2       2     2 2   000               2     2   2      2 2     2         333     
lowQualScore                  :                       .       .     . .   ...               .     .   .      . .     .         ...     
lowQualScore                  :                       9       9     9 9   333               1     1   1      1 1     1         777     
consensus                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
Reference ( family-815 )      : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
gi|112519                     : AAAATTGGTTGTTTTTGCGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAAATTGACGT-CTTTT-CTT-GGTGGT-A-TTTGC-AAATTGTTC---TGACG
gi|112520                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GAAAG-G-TGT---ACGTCAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTCTTT---TGACG
gi|112521                     : AAAATTGGTTGTTTC-ACGTTG-AAAAGAC-GCCAG-G-TGT---ACGTTAGATTGACGT-CTTTT-CTT-GGCTGT-A-TTTGC-AAATTGTTT---TGATGtc
gi|112522                     : AAAATTGGTTGTTTTTACGTTG-AAATG-C-GTCAG-G-TGT---ACGTTTGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAGTT-TTT---TGACG
gi|112523                     : AAAATTGGTCGTTTTTGCGCTG-AAAAGAC-TTCGG-G-TGT---ACGTTAGATTGACGT-ATTTT-CTT-GATTGT-A-TTTGC-AAATTG-TT---TGACGtc
gi|112524                     : AAAATTG-TT-TTTTTACGTTGGAAAAGAC-ATCAG-GGTGTTT-ACGTTAGGTTG-CGC-GTGTT-CTT-GGTTGT-T-TTTGC-ATATTGGTT---TGACGtc
gi|112525                     : aAAATTGGTTGTTTTTATGTTG-AAAAGAC-ACCAG-G-TGT---ACGTTAGGTTGACGG-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTACCTGACGtc
gi|112526                     :           GTTTTTACGTTG-AAAAGAA-GTTAG-G-TGT---CCGTTAGGTTGACGT-CTTTT-CTT-G--TGTAA-TTTGC-AAA-TGTTT---TGtc
gi|112527                     :   gtggGGTT-TTTTTACGTTG-AAAAGAC-GTCAG-A-TAT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGT-AAATTGTTT---TGACcgatgtc
gi|112528                     :       GGTTGTTTTTACGTTG-AAAAGA----------TGT---ACGTTAGGCTGACGT-CTTTT-CTT-GGTTGT-ATTTTTC-AAATTGGTT---TGACG
gi|112529                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTA
gi|112530                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTAatt
gi|112531                     :                 ACGTTG-AAAAGAC-GTTAGAG-TGTG--ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGA-AAATTGTTT---TGACGatt
gi|112532                     :                 ACGTTG-AAAAGACTGTAGA-G-TGTGTGACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A--TTGA-AAATTGTTT---TGACGtc
gi|112533                     :                                           ---ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGAtc
gi|112534                     :                                           ---ACGTTAGATTGACGTGCTTTT-CTTTGGTTGT-A-TTTGC-AAATTGTTT---
gi|112535                     :                                                 TTAAGTTGACGT-TTTTTTCTT-GGTTGT-T-TTTGC-AAATTGTTT---TGACG
gi|112536                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112537                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112538                     :                                                         ACGT-CTTTT-CTA-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112539                     :                                                         ACGT-CTTTT-CT--AGTTGT-A-TTTGCAAAATTGTTT---TGACGtc





Alignments
lowQualScore                  :                                           111                                                          
lowQualScore                  :                       2       2     2 2   000               2     2   2      2 2     2         333     
lowQualScore                  :                       .       .     . .   ...               .     .   .      . .     .         ...     
lowQualScore                  :                       9       9     9 9   333               1     1   1      1 1     1         777     
consensus                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
Reference ( family-815 )      : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
gi|112519                     : AAAATTGGTTGTTTTTGCGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAAATTGACGT-CTTTT-CTT-GGTGGT-A-TTTGC-AAATTGTTC---TGACG
gi|112520                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GAAAG-G-TGT---ACGTCAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTCTTT---TGACG
gi|112521                     : AAAATTGGTTGTTTC-ACGTTG-AAAAGAC-GCCAG-G-TGT---ACGTTAGATTGACGT-CTTTT-CTT-GGCTGT-A-TTTGC-AAATTGTTT---TGATGtc
gi|112522                     : AAAATTGGTTGTTTTTACGTTG-AAATG-C-GTCAG-G-TGT---ACGTTTGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAGTT-TTT---TGACG
gi|112523                     : AAAATTGGTCGTTTTTGCGCTG-AAAAGAC-TTCGG-G-TGT---ACGTTAGATTGACGT-ATTTT-CTT-GATTGT-A-TTTGC-AAATTG-TT---TGACGtc
gi|112524                     : AAAATTG-TT-TTTTTACGTTGGAAAAGAC-ATCAG-GGTGTTT-ACGTTAGGTTG-CGC-GTGTT-CTT-GGTTGT-T-TTTGC-ATATTGGTT---TGACGtc
gi|112525                     : aAAATTGGTTGTTTTTATGTTG-AAAAGAC-ACCAG-G-TGT---ACGTTAGGTTGACGG-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTACCTGACGtc
gi|112526                     :           GTTTTTACGTTG-AAAAGAA-GTTAG-G-TGT---CCGTTAGGTTGACGT-CTTTT-CTT-G--TGTAA-TTTGC-AAA-TGTTT---TGtc
gi|112527                     :   gtggGGTT-TTTTTACGTTG-AAAAGAC-GTCAG-A-TAT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGT-AAATTGTTT---TGACcgatgtc
gi|112528                     :       GGTTGTTTTTACGTTG-AAAAGA----------TGT---ACGTTAGGCTGACGT-CTTTT-CTT-GGTTGT-ATTTTTC-AAATTGGTT---TGACG
gi|112529                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTA
gi|112530                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTAatt
gi|112531                     :                 ACGTTG-AAAAGAC-GTTAGAG-TGTG--ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGA-AAATTGTTT---TGACGatt
gi|112532                     :                 ACGTTG-AAAAGACTGTAGA-G-TGTGTGACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A--TTGA-AAATTGTTT---TGACGtc
gi|112533                     :                                           ---ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGAtc
gi|112534                     :                                           ---ACGTTAGATTGACGTGCTTTT-CTTTGGTTGT-A-TTTGC-AAATTGTTT---
gi|112535                     :                                                 TTAAGTTGACGT-TTTTTTCTT-GGTTGT-T-TTTGC-AAATTGTTT---TGACG
gi|112536                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112537                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112538                     :                                                         ACGT-CTTTT-CTA-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112539                     :                                                         ACGT-CTTTT-CT--AGTTGT-A-TTTGCAAAATTGTTT---TGACGtc


blockSeqs                     :                       G       T     A G   GTG               G     T   T      A T     A         ACC
blockSeqs                     :                       .       .     . .   TT                .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   G                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                       .       .     . .   .                 .     .   .      . .     .         .  
blockSeqs                     :                                           .                 .     .   .      . .     .         .  
blockSeqs                     :                                           .                 .     .   .      . .     .         .  
blockSeqs                     :                                                             .     .   .      . .     .         .  
blockSeqs                     :                                                             .     .   .      . .     .         .  
blockSeqs                     :                                                             .     .   .      . .     .         .  


blockSeqCons                  : 
originalCons                  : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
finalCons                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG





Alignments
lowQualScore                  :                                           111                                                          
lowQualScore                  :                       2       2     2 2   000               2     2   2      2 2     2         333     
lowQualScore                  :                       .       .     . .   ...               .     .   .      . .     .         ...     
lowQualScore                  :                       9       9     9 9   333               1     1   1      1 1     1         777     
consensus                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
Reference ( family-815 )      : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACG
gi|112519                     : AAAATTGGTTGTTTTTGCGTTG-AAAAGAC-GTCAG-G-TGT---ACGTTAAATTGACGT-CTTTT-CTT-GGTGGT-A-TTTGC-AAATTGTTC---TGACG
gi|112520                     : AAAATTGGTTGTTTTTACGTTG-AAAAGAC-GAAAG-G-TGT---ACGTCAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTCTTT---TGACG
gi|112521                     : AAAATTGGTTGTTTC-ACGTTG-AAAAGAC-GCCAG-G-TGT---ACGTTAGATTGACGT-CTTTT-CTT-GGCTGT-A-TTTGC-AAATTGTTT---TGATGtc
gi|112522                     : AAAATTGGTTGTTTTTACGTTG-AAATG-C-GTCAG-G-TGT---ACGTTTGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAGTT-TTT---TGACG
gi|112523                     : AAAATTGGTCGTTTTTGCGCTG-AAAAGAC-TTCGG-G-TGT---ACGTTAGATTGACGT-ATTTT-CTT-GATTGT-A-TTTGC-AAATTG-TT---TGACGtc
gi|112524                     : AAAATTG-TT-TTTTTACGTTGGAAAAGAC-ATCAG-GGTGTTT-ACGTTAGGTTG-CGC-GTGTT-CTT-GGTTGT-T-TTTGC-ATATTGGTT---TGACGtc
gi|112525                     : aAAATTGGTTGTTTTTATGTTG-AAAAGAC-ACCAG-G-TGT---ACGTTAGGTTGACGG-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTTACCTGACGtc
gi|112526                     :           GTTTTTACGTTG-AAAAGAA-GTTAG-G-TGT---CCGTTAGGTTGACGT-CTTTT-CTT-G--TGTAA-TTTGC-AAA-TGTTT---TGtc
gi|112527                     :   gtggGGTT-TTTTTACGTTG-AAAAGAC-GTCAG-A-TAT---ACGTTAGGTTGACGT-CTTTT-CTT-GGTTGT-A-TTTGT-AAATTGTTT---TGACcgatgtc
gi|112528                     :       GGTTGTTTTTACGTTG-AAAAGA----------TGT---ACGTTAGGCTGACGT-CTTTT-CTT-GGTTGT-ATTTTTC-AAATTGGTT---TGACG
gi|112529                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTA
gi|112530                     :             TTTTACGTTG-AAAAGAC-GTCAA-G-TGT---ACGTTAatt
gi|112531                     :                 ACGTTG-AAAAGAC-GTTAGAG-TGTG--ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGA-AAATTGTTT---TGACGatt
gi|112532                     :                 ACGTTG-AAAAGACTGTAGA-G-TGTGTGACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A--TTGA-AAATTGTTT---TGACGtc
gi|112533                     :                                           ---ACGTTAGATTGACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGAtc
gi|112534                     :                                           ---ACGTTAGATTGACGTGCTTTT-CTTTGGTTGT-A-TTTGC-AAATTGTTT---
gi|112535                     :                                                 TTAAGTTGACGT-TTTTTTCTT-GGTTGT-T-TTTGC-AAATTGTTT---TGACG
gi|112536                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112537                     :                                                         ACGT-CTTTT-CTT-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112538                     :                                                         ACGT-CTTTT-CTA-GGTTGT-A-TTTGC-AAATTGTTT---TGACGtc
gi|112539                     :                                                         ACGT-CTTTT-CT--AGTTGT-A-TTTGCAAAATTGTTT---TGACGtc