lowQualScore : 1 11 1
lowQualScore : 2 2 22 4444 3 33 555555 5 2 2 8 2 2 22
lowQualScore : . . .. .... . .. ...... . . . . . . ..
lowQualScore : 1 1 99 2222 6 11 888888 0 1 1 9 1 1 99
consensus : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GAC-TCGG-A-CA--TTTTACATCAC
Reference ( gi|128608 ) : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTCTGAAGATCATCCGGAATTTGAAAGTTT------CTTCAAGCT-GAC-TC-G-A-CA--TTTTACATCAC
gi|128611 : AATG-CACCA-A--TT--A-GCTCTCAACTGCGCTATGAAAATCATACTGAATTCAAAAGTTT------CTTCAAGCT-GAC-TC-G-A-CA--TTTTACATC
gi|128609 : AATG-CACCA-G--TT--A-GCTCTGAACTGCGCTATGATGATCATCCGGAATTCAAAAGTAT------CTTCAAGCT-GAC-TCGG-A-CA--TTTTACATCAC
gi|128613 : AATT-CATCATA--TT--A-TCTCTCAACTGCGCTATGAAGATCATCCGGAATTCAAAAGCTT------CTTCAAGAT-GAC-TC-G-G-CA--TTTTGCATCAC
gi|128610 : AATG-CATCA-A--CTCTATGCTCTCAACTGTGCTATGAAGATTATCCGGAATTCAAAGGTTT------CTTCAAGCT-GAC-TTGG-A-CA--TTTTACATCAC
gi|128612 : AATGGCATCA-A--TT--A-GCTCTCAATTGCGTCATGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-ATT-TCGG-G-CA--TTTTACATCAC
gi|128616 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTGTGAGATTCATCCGGAATTCAAATGTTTCTTCCACTTCAGACT-GAC-TT-G-A-CA--TTTTACATCAC
gi|128614 : AATG-CATCA-G--TT--T-GCTCTCACTTGCGCTTTGAAGATCATCCGGAAATCAAAAGTTT------CTTCATGCT-GACGTG-G-A-CA--TTTTACATCGC
gi|128615 : AATA-CATCA-A--TT--A-GCTCTAATCTATGCTATGAGGATCATCCGGAATTCACAACTTT------CTTCAAGCT-GAC-TC-A-A-CA--TCTTACATCAC
gi|128618 : AATA-CATTA-A--TT--A-GCTCTCATCTGCGCTATGAATATCATCAGGAATTCAAAAGTCT------CTTCCATCC-GAC-TC-G-A-CA--TATTACACCA
gi|128617 : AATG-CATCA-A--TT--T-GCTCTCAACTGCGCTTTGAA---TATCCGGAATTCAAACGTTT------CTTTATGCT-GAC-TCGG-A-CA--TTTT
gi|128620 : AATG-CATTA-G--CT--T-GTTCTCAACAGCGCTTTGAAGATAATTCGGAATTCCAAAGTTT------CTTCATGCT-GAC-TC-GTA-TA--CTTTAAATCAC
gi|128619 : AATG-CATCA-A--TC--A-GCTCTCAATTGCGCTATGAAAATCATCCGGAATTCAAAA--------------------GAC-TCGG-A-CA---TTTACATCAC
gi|128622 : AATG-CACTA-A--TT--T-GCTTTCAACTTTGCTCTGGAGATTATCTAGAATTCAAAGGTTT------CTTCA---T---C-CT-G-A-CA--TTTTACATCAC
gi|128621 : AATG-CATCA-A--TT--T-GCTCACAA--------------TCATCCGGAATTCAAAAGTTT------CTTCATGCT-GAC-TCGG-A-CA--TTTTACATAAC
gi|128623 : AATG-CATCA-A--TT--T-GCTCTCAACTGCG-TTTGAAGATTGTCCGAAAATCAAAA--------------------AAC-TCGG-A-CA--TTTTACGT
gi|128624 : TG-CATCA-A--TT--A-GCTCTCAACTA-----TGAAGATCATCCGGAATTTAAATGTTT------CTTAAAGTT-GAC-TCGG-A-CA--TTTTACATCAC
gi|128625 : TG-CATCA-AACTT--A---TCTTGTTTGTGCTTTGAAGATCATCCGGAATTCAAAGGTTT------CTTCACGTTAAAG-TC-G---CAGGTTTTACAGCAC
gi|128626 : TG-CATCA-A--TC--A-G-TCTCAACT-CGCT-TGAA-ATCATC--GAAATTCAACGTTT------CTTCAAGCT--AT-TCAG-A-CA---GTTACAT
gi|128627 : -CATCA-A--TT--A-TCTCTACATTACGTT-TGAAGATCCTCCAGAATTCACAGGTCT------CTTCATAAT-GAC-TC-G-GCCA--TTT
gi|128628 : TCAACTGCGCTTTGAAGATCATCCGGAATTC--AAGTTT------
Alignments
lowQualScore : 2 2 22 3333 3 555555 3 2 4
lowQualScore : . . .. .... . ...... . . .
lowQualScore : 0 0 88 5555 5 555555 1 0 6
consensus : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
Reference ( family-802 ) : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128608 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTCTGAAGATCATCCGGAATTTGAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATCAC
gi|128609 : AATG-CACCA-G--TT--A-GCTCTGAACTGCGCTATGATGATCATCCGGAATTCAAAAGTAT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128610 : AATG-CATCA-A--CTCTATGCTCTCAACTGTGCTATGAAGATTATCCGGAATTCAAAGGTTT------CTTCAAGCT-GACTTGGACATTTTACATCAC
gi|128611 : AATG-CACCA-A--TT--A-GCTCTCAACTGCGCTATGAAAATCATACTGAATTCAAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATC
gi|128612 : AATGGCATCA-A--TT--A-GCTCTCAATTGCGTCATGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-ATTTCGGGCATTTTACATCAC
gi|128613 : AATT-CATCATA--TT--A-TCTCTCAACTGCGCTATGAAGATCATCCGGAATTCAAAAGCTT------CTTCAAGAT-GACTCGG-CATTTTGCATCAC
gi|128614 : AATG-CATCA-G--TT--T-GCTCTCACTTGCGCTTTGAAGATCATCCGGAAATCAAAAGTTT------CTTCATGCT-GACGTGGACATTTTACATCGC
gi|128615 : AATA-CATCA-A--TT--A-GCTCTAATCTATGCTATGAGGATCATCCGGAATTCACAACTTT------CTTCAAGCT-GACTC-AACATCTTACATCAC
gi|128616 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTGTGAGATTCATCCGGAATTCAAATGTTTCTTCCACTTCAGACT-GACTT-GACATTTTACATCAC
gi|128617 : AATG-CATCA-A--TT--T-GCTCTCAACTGCGCTTTGAA---TATCCGGAATTCAAACGTTT------CTTTATGCT-GACTCGGACATTTT
gi|128618 : AATA-CATTA-A--TT--A-GCTCTCATCTGCGCTATGAATATCATCAGGAATTCAAAAGTCT------CTTCCATCC-GACTC-GACATATTACACCA
gi|128619 : AATG-CATCA-A--TC--A-GCTCTCAATTGCGCTATGAAAATCATCCGGAATTCAAAA--------------------GACTCGGACA-TTTACATCAC
gi|128620 : AATG-CATTA-G--CT--T-GTTCTCAACAGCGCTTTGAAGATAATTCGGAATTCCAAAGTTT------CTTCATGCT-GACTCGTATACTTTAAATCAC
gi|128621 : AATG-CATCA-A--TT--T-GCTCACAA--------------TCATCCGGAATTCAAAAGTTT------CTTCATGCT-GACTCGGACATTTTACATAAC
gi|128622 : AATG-CACTA-A--TT--T-GCTTTCAACTTTGCTCTGGAGATTATCTAGAATTCAAAGGTTT------CTTCATCCT-------GACATTTTACATCAC
gi|128623 : AATG-CATCA-A--TT--T-GCTCTCAACTGCG-TTTGAAGATTGTCCGAAAATCAAAA--------------------AACTCGGACATTTTACGT
gi|128624 : TG-CATCA-A--TT--A-GCTCTCAACT-----ATGAAGATCATCCGGAATTTAAATGTTT------CTTAAAGTT-GACTCGGACATTTTACATCAC
gi|128625 : TG-CATCA-AACTT--A---TCTTGTTTGTGCTTTGAAGATCATCCGGAATTCAAAGGTTT------CTTCACGTTAAAGTCGCAGGTTTTACAGCAC
gi|128626 : TG-CATCA-A--TC--A-G-TCTCAACT-CGCT-TGAA-ATCATC-GAAATTCAAC-GTTT------CTTCAAGCT--ATTCAGACA-GTTACAT
gi|128627 : -CATCA-A--TT--A-TCTCTACATTACG-TTTGAAGATCCTCCAGAATTCACAGGTCT------CTTCATAAT-GACTCGGCCATTT
gi|128628 : TCAACTGCGCTTTGAAGATCATCCGGAATTC--AAGTTT------
Alignments
lowQualScore : 2 2 22 3333 3 555555 3 2 4
lowQualScore : . . .. .... . ...... . . .
lowQualScore : 0 0 88 5555 5 555555 1 0 6
consensus : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
Reference ( family-802 ) : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128608 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTCTGAAGATCATCCGGAATTTGAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATCAC
gi|128609 : AATG-CACCA-G--TT--A-GCTCTGAACTGCGCTATGATGATCATCCGGAATTCAAAAGTAT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128610 : AATG-CATCA-A--CTCTATGCTCTCAACTGTGCTATGAAGATTATCCGGAATTCAAAGGTTT------CTTCAAGCT-GACTTGGACATTTTACATCAC
gi|128611 : AATG-CACCA-A--TT--A-GCTCTCAACTGCGCTATGAAAATCATACTGAATTCAAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATC
gi|128612 : AATGGCATCA-A--TT--A-GCTCTCAATTGCGTCATGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-ATTTCGGGCATTTTACATCAC
gi|128613 : AATT-CATCATA--TT--A-TCTCTCAACTGCGCTATGAAGATCATCCGGAATTCAAAAGCTT------CTTCAAGAT-GACTCGG-CATTTTGCATCAC
gi|128614 : AATG-CATCA-G--TT--T-GCTCTCACTTGCGCTTTGAAGATCATCCGGAAATCAAAAGTTT------CTTCATGCT-GACGTGGACATTTTACATCGC
gi|128615 : AATA-CATCA-A--TT--A-GCTCTAATCTATGCTATGAGGATCATCCGGAATTCACAACTTT------CTTCAAGCT-GACTC-AACATCTTACATCAC
gi|128616 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTGTGAGATTCATCCGGAATTCAAATGTTTCTTCCACTTCAGACT-GACTT-GACATTTTACATCAC
gi|128617 : AATG-CATCA-A--TT--T-GCTCTCAACTGCGCTTTGAA---TATCCGGAATTCAAACGTTT------CTTTATGCT-GACTCGGACATTTT
gi|128618 : AATA-CATTA-A--TT--A-GCTCTCATCTGCGCTATGAATATCATCAGGAATTCAAAAGTCT------CTTCCATCC-GACTC-GACATATTACACCA
gi|128619 : AATG-CATCA-A--TC--A-GCTCTCAATTGCGCTATGAAAATCATCCGGAATTCAAAA--------------------GACTCGGACA-TTTACATCAC
gi|128620 : AATG-CATTA-G--CT--T-GTTCTCAACAGCGCTTTGAAGATAATTCGGAATTCCAAAGTTT------CTTCATGCT-GACTCGTATACTTTAAATCAC
gi|128621 : AATG-CATCA-A--TT--T-GCTCACAA--------------TCATCCGGAATTCAAAAGTTT------CTTCATGCT-GACTCGGACATTTTACATAAC
gi|128622 : AATG-CACTA-A--TT--T-GCTTTCAACTTTGCTCTGGAGATTATCTAGAATTCAAAGGTTT------CTTCATCCT-------GACATTTTACATCAC
gi|128623 : AATG-CATCA-A--TT--T-GCTCTCAACTGCG-TTTGAAGATTGTCCGAAAATCAAAA--------------------AACTCGGACATTTTACGT
gi|128624 : TG-CATCA-A--TT--A-GCTCTCAACT-----ATGAAGATCATCCGGAATTTAAATGTTT------CTTAAAGTT-GACTCGGACATTTTACATCAC
gi|128625 : TG-CATCA-AACTT--A---TCTTGTTTGTGCTTTGAAGATCATCCGGAATTCAAAGGTTT------CTTCACGTTAAAGTCGCAGGTTTTACAGCAC
gi|128626 : TG-CATCA-A--TC--A-G-TCTCAACT-CGCT-TGAA-ATCATC-GAAATTCAAC-GTTT------CTTCAAGCT--ATTCAGACA-GTTACAT
gi|128627 : -CATCA-A--TT--A-TCTCTACATTACG-TTTGAAGATCCTCCAGAATTCACAGGTCT------CTTCATAAT-GACTCGGCCATTT
gi|128628 : TCAACTGCGCTTTGAAGATCATCCGGAATTC--AAGTTT------
blockSeqs : G T AC CTAT A CTTCCA A A G
blockSeqs : . . . A A . A . G
blockSeqs : . . . A A . A . G
blockSeqs : . . . A A . A . G
blockSeqs : . . . A A . A . G
blockSeqs : . . . T T . T . G
blockSeqs : . . . A A . A . G
blockSeqs : . . . A G . G . G
blockSeqs : . . . T T . T . G
blockSeqs : . . . A A . A . G
blockSeqs : . . . A A . T . G
blockSeqs : . . . T T . T . G
blockSeqs : . . . T C . T . A
blockSeqs : . . . T T . A . G
blockSeqs : . . . T A . C . .
blockSeqs : . . . A T . A . .
blockSeqs : . . . A T . T . .
blockSeqs : . . . A T . . . .
blockSeqs : . . . A . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
finalCons : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
Alignments
lowQualScore : 2 2 22 3333 3 555555 3 2 4
lowQualScore : . . .. .... . ...... . . .
lowQualScore : 0 0 88 5555 5 555555 1 0 6
consensus : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
Reference ( family-802 ) : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTNTGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128608 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTCTGAAGATCATCCGGAATTTGAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATCAC
gi|128609 : AATG-CACCA-G--TT--A-GCTCTGAACTGCGCTATGATGATCATCCGGAATTCAAAAGTAT------CTTCAAGCT-GACTCGGACATTTTACATCAC
gi|128610 : AATG-CATCA-A--CTCTATGCTCTCAACTGTGCTATGAAGATTATCCGGAATTCAAAGGTTT------CTTCAAGCT-GACTTGGACATTTTACATCAC
gi|128611 : AATG-CACCA-A--TT--A-GCTCTCAACTGCGCTATGAAAATCATACTGAATTCAAAAGTTT------CTTCAAGCT-GACTC-GACATTTTACATC
gi|128612 : AATGGCATCA-A--TT--A-GCTCTCAATTGCGTCATGAAGATCATCCGGAATTCAAAAGTTT------CTTCAAGCT-ATTTCGGGCATTTTACATCAC
gi|128613 : AATT-CATCATA--TT--A-TCTCTCAACTGCGCTATGAAGATCATCCGGAATTCAAAAGCTT------CTTCAAGAT-GACTCGG-CATTTTGCATCAC
gi|128614 : AATG-CATCA-G--TT--T-GCTCTCACTTGCGCTTTGAAGATCATCCGGAAATCAAAAGTTT------CTTCATGCT-GACGTGGACATTTTACATCGC
gi|128615 : AATA-CATCA-A--TT--A-GCTCTAATCTATGCTATGAGGATCATCCGGAATTCACAACTTT------CTTCAAGCT-GACTC-AACATCTTACATCAC
gi|128616 : AATG-CATCA-A--TT--A-GCTCTCAACTGCGCTGTGAGATTCATCCGGAATTCAAATGTTTCTTCCACTTCAGACT-GACTT-GACATTTTACATCAC
gi|128617 : AATG-CATCA-A--TT--T-GCTCTCAACTGCGCTTTGAA---TATCCGGAATTCAAACGTTT------CTTTATGCT-GACTCGGACATTTT
gi|128618 : AATA-CATTA-A--TT--A-GCTCTCATCTGCGCTATGAATATCATCAGGAATTCAAAAGTCT------CTTCCATCC-GACTC-GACATATTACACCA
gi|128619 : AATG-CATCA-A--TC--A-GCTCTCAATTGCGCTATGAAAATCATCCGGAATTCAAAA--------------------GACTCGGACA-TTTACATCAC
gi|128620 : AATG-CATTA-G--CT--T-GTTCTCAACAGCGCTTTGAAGATAATTCGGAATTCCAAAGTTT------CTTCATGCT-GACTCGTATACTTTAAATCAC
gi|128621 : AATG-CATCA-A--TT--T-GCTCACAA--------------TCATCCGGAATTCAAAAGTTT------CTTCATGCT-GACTCGGACATTTTACATAAC
gi|128622 : AATG-CACTA-A--TT--T-GCTTTCAACTTTGCTCTGGAGATTATCTAGAATTCAAAGGTTT------CTTCATCCT-------GACATTTTACATCAC
gi|128623 : AATG-CATCA-A--TT--T-GCTCTCAACTGCG-TTTGAAGATTGTCCGAAAATCAAAA--------------------AACTCGGACATTTTACGT
gi|128624 : TG-CATCA-A--TT--A-GCTCTCAACT-----ATGAAGATCATCCGGAATTTAAATGTTT------CTTAAAGTT-GACTCGGACATTTTACATCAC
gi|128625 : TG-CATCA-AACTT--A---TCTTGTTTGTGCTTTGAAGATCATCCGGAATTCAAAGGTTT------CTTCACGTTAAAGTCGCAGGTTTTACAGCAC
gi|128626 : TG-CATCA-A--TC--A-G-TCTCAACT-CGCT-TGAA-ATCATC-GAAATTCAAC-GTTT------CTTCAAGCT--ATTCAGACA-GTTACAT
gi|128627 : -CATCA-A--TT--A-TCTCTACATTACG-TTTGAAGATCCTCCAGAATTCACAGGTCT------CTTCATAAT-GACTCGGCCATTT
gi|128628 : TCAACTGCGCTTTGAAGATCATCCGGAATTC--AAGTTT------