lowQualScore : 1 11 1 1
lowQualScore : 77 2 4 2 4444 2 2 1 2 2 4444 2 4 44 2 1
lowQualScore : .. . . . .... . . . . . .... . . .. . .
lowQualScore : 33 2 0 0 2222 0 0 6 0 0 2222 8 0 55 1 8
consensus : TTTGAC-CT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AANAGTTTCAACTAC
Reference ( gi|124151 ) : TTTGAA-CT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-ATTAGTTTAAACAAC
gi|124152 : TTTGAA-CT-CTAAAAAAAT-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGTAATGG-C----TGC-ATTAGTTTAAAC
gi|124153 : TTTGAATCT-CTAAAAATAATGG-TGA-----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-ATTAGTTTAAAC
gi|124154 : TTTGAA-CT-CTAAATTAAA-GG-TGAA----CAAAA-TAAAAATT------ACATTCTCAGT-ATTG-C----TACAAATAGTTTCAACTAC
gi|124156 : TTTGAC-CT-CAAAATAAAA-CG-TTAA----CAAAA-TGAAAATTACT-TTACATTTTCACT-ATTG-C----TAC-AATAGTTTCAACTAC
gi|124157 : TTTGAC-CT-CTAAATAAAA-GT-TGTA----CGAAC-TGAAAATTACC-TCACATTCTCAGT-ATTG-C----TAT-AATAGTTTCAACTAC
gi|124155 : TTTGTA-C--CTAAATGTAA-GG-TGAA----CAAAA-TGAAAATTACT-TAACATTTTCAGT-ATTA-C----TAC-AAAAGTTTCAA
gi|124160 : TTTGAC-CT-CTACATAAAA-GG-TGAA----CAAAA-TGAAAATT------ACATTCTGAGT-ATTG-T----TGC-A
gi|124158 : TTTGAA-TG-CTAAATAAAA-GG-TGAT----CAAAA-TAAAAATTACTAAAACATTCTCAAT-ATTG-CTTTTTAC-AATAGTTTCAACTACaaagtgtc
gi|124159 : TTTGAC-CT-CTAAATAAAA-G--TGAA----CAAAA-----AATT----T-ACATTCTCAGT-ATTG-C----TAC-TTAAGTTTCAACTAC
gi|124161 : TTTTAC-CT-CTAAAGAAAA-GG-TGAATTCACAAAA-TGAATATCGCT-TTACATTCTTGGT-ATTT-C----TAC-TATAGTT---ACAAC
gi|124163 : TTGAC-CT-TTAGATAACA-GG-TGAA----CAAAA-TAAAAATTACT-TTA-ATTCTCAGT-ATTG-C----TGC-AAAAGTTTCAACAACt
gi|124162 : TTGAC-CT-CTAAATAATA-GG-TGAA----TGGAA-TGAAAATTACT-TCACATTCTTAAT-ATTG-C----CAC-AAAAGTTTCAACTAC
gi|124165 : TTGAC-CT-TTAAATGAAA-GA-CGAA----CAAAA-TGAAAGTCACT-GGACATTCTCAAT-TTTGAC----TAC-A
gi|124164 : TTGAC-CTGCAAAATAA---GG-AGAA----CAAAAATAAAAATTACT-TTACATTTTTATT--TTG-C----TAC-AGCAGTTTCAACTAC
gi|124166 : TGAC-CT-CTAAATAAAA-TG-TGAA----CAAAA-TAAAAATTACT-TCACGTTCTCAGT-ATTG-C----TAC-AAAAGTTTCAAC
gi|124167 : TGAA-CT-CTAAATAAAA-TG-TGAA----CAAAA-TG-AAATTACT-TTTCAGTGACAGT-ATTA-C----TAC-AATAGt
gi|124168 : A-CT-TTTAATAAAA-GGATGAA----TATAA-TGAAGACCACT-CCACATTTTCAGA-ATTG-C----TAC-AAAGGTTTTAACTACgtctta
gi|124169 : -CT-CTTGATAAAATAG-TGAA----CAAAA-TAAAAATTACT-TTACATCCTTAGT-ATTG-C----TAC-GAAAGTTT
gi|124170 : AAAA-GA-TGAA----CTAAA-TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-ATAAATTTCAACtatttac
gi|124171 : AAAA-GA-TGAA----CTAA--TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TACAATAAATTTCAAC
Alignments
lowQualScore : 2 2 2 3 1 4444 1 1 2 1 1 4444 1 33
lowQualScore : . . . . . .... . . . . . .... . ..
lowQualScore : 4 4 1 8 9 0000 9 9 3 9 9 0000 9 00
consensus : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
Reference ( family-800 ) : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
gi|124151 : TTTG-A-ACT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAACAAC
gi|124152 : TTTG-A-ACT-CTAAAAAAAT-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGTAATGG-C----TGC-AT-TAGTTTAAAC
gi|124153 : TTTG-AATCT-CTAAAAATAATGG-TGA-----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAAC
gi|124154 : TTTG-A-ACT-CTAAATTAAA-GG-TGAA----CAAAA-TAAAAATT------ACATTCTCAGT-ATTG-C----TACAAA-TAGTTTCAACTAC
gi|124155 : TTTGTA-CCT---AAATGTAA-GG-TGAA----CAAAA-TGAAAATTACT-TAACATTTTCAGT-ATTA-C----TAC-AA-AAGTTTCAA
gi|124156 : TTTG-A-CCT-CAAAATAAAA-CG-TTAA----CAAAA-TGAAAATTACT-TTACATTTTCACT-ATTG-C----TAC-AA-TAGTTTCAACTAC
gi|124157 : TTTG-A-CCT-CTAAATAAAA-GT-TGTA----CGAAC-TGAAAATTACC-TCACATTCTCAGT-ATTG-C----TAT-AA-TAGTTTCAACTAC
gi|124158 : TTTG-A-ATG-CTAAATAAAA-GG-TGAT----CAAAA-TAAAAATTACTAAAACATTCTCAAT-ATTG-CTTTTTAC-AA-TAGTTTCAACTAC
gi|124159 : TTTG-A-CCT-CTAAATAAAA-G--TGAA----CAAAA-----AATT-----TACATTCTCAGT-ATTG-C----TAC-TT-AAGTTTCAACTAC
gi|124160 : TTTG-A-CCT-CTACATAAAA-GG-TGAA----CAAAA-TGAAAATT------ACATTCTGAGT-ATTG-T----TGC-AA-AAGTGTC
gi|124161 : TTTT-A-CCT-CTAAAGAAAA-GG-TGAATTCACAAAA-TGAATATCGCT-TTACATTCTTGGT-ATTT-C----TAC-TA-TAGTTACAACT
gi|124162 : TTG-A-CCT-CTAAATAATA-GG-TGAA----TGGAA-TGAAAATTACT-TCACATTCTTAAT-ATTG-C----CAC-AA-AAGTTTCAACTAC
gi|124163 : TTG-A-CCT-TTAGATAACA-GG-TGAA----CAAAA-TAAAAATTACT-TTA-ATTCTCAGT-ATTG-C----TGC-AA-AAGTTTCAACAAC
gi|124164 : TTG-A-CCTGCAAAATAA---GG-AGAA----CAAAAATAAAAATTACT-TTACATTTTTATT--TTG-C----TAC-AG-CAGTTTCAACTAC
gi|124165 : TTG-A-CCT-TTAAATGAAA-GA-CGAA----CAAAA-TGAAAGTCACT-GGACATTCTCAAT-TTTGAC----TAC-A
gi|124166 : TG-A-CCT-CTAAATAAAA-TG-TGAA----CAAAA-TAAAAATTACT-TCACGTTCTCAGT-ATTG-C----TAC-AA-AAGTTTCAACT
gi|124167 : TG-A-ACT-CTAAATAAAA-TG-TGAA----CAAAA-TG-AAATTACT-TTTCAGTGACAGT-ATTA-C----TAC-AA-TAG
gi|124168 : CT-TTTAATAAAA-GGATGAA----TATAA-TGAAGACCACT-CCACATTTTCAGA-ATTG-C----TAC-AA-AGGTTTTAACTACgtctta
gi|124169 : aCT-CTTGATAAAATAG-TGAA----CAAAA-TAAAAATTACT-TTACATCCTTAGT-ATTG-C----TAC-GA-AAGTTTTATTTAC
gi|124170 : AAAA-GA-TGAA----CTAAA-TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AT-AAATTTCAAC
gi|124171 : AAAA-GA-TGAA----CTAA--TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AATAAATTTCAAC
Alignments
lowQualScore : 2 2 2 3 1 4444 1 1 2 1 1 4444 1 33
lowQualScore : . . . . . .... . . . . . .... . ..
lowQualScore : 4 4 1 8 9 0000 9 9 3 9 9 0000 9 00
consensus : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
Reference ( family-800 ) : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
gi|124151 : TTTG-A-ACT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAACAAC
gi|124152 : TTTG-A-ACT-CTAAAAAAAT-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGTAATGG-C----TGC-AT-TAGTTTAAAC
gi|124153 : TTTG-AATCT-CTAAAAATAATGG-TGA-----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAAC
gi|124154 : TTTG-A-ACT-CTAAATTAAA-GG-TGAA----CAAAA-TAAAAATT------ACATTCTCAGT-ATTG-C----TACAAA-TAGTTTCAACTAC
gi|124155 : TTTGTA-CCT---AAATGTAA-GG-TGAA----CAAAA-TGAAAATTACT-TAACATTTTCAGT-ATTA-C----TAC-AA-AAGTTTCAA
gi|124156 : TTTG-A-CCT-CAAAATAAAA-CG-TTAA----CAAAA-TGAAAATTACT-TTACATTTTCACT-ATTG-C----TAC-AA-TAGTTTCAACTAC
gi|124157 : TTTG-A-CCT-CTAAATAAAA-GT-TGTA----CGAAC-TGAAAATTACC-TCACATTCTCAGT-ATTG-C----TAT-AA-TAGTTTCAACTAC
gi|124158 : TTTG-A-ATG-CTAAATAAAA-GG-TGAT----CAAAA-TAAAAATTACTAAAACATTCTCAAT-ATTG-CTTTTTAC-AA-TAGTTTCAACTAC
gi|124159 : TTTG-A-CCT-CTAAATAAAA-G--TGAA----CAAAA-----AATT-----TACATTCTCAGT-ATTG-C----TAC-TT-AAGTTTCAACTAC
gi|124160 : TTTG-A-CCT-CTACATAAAA-GG-TGAA----CAAAA-TGAAAATT------ACATTCTGAGT-ATTG-T----TGC-AA-AAGTGTC
gi|124161 : TTTT-A-CCT-CTAAAGAAAA-GG-TGAATTCACAAAA-TGAATATCGCT-TTACATTCTTGGT-ATTT-C----TAC-TA-TAGTTACAACT
gi|124162 : TTG-A-CCT-CTAAATAATA-GG-TGAA----TGGAA-TGAAAATTACT-TCACATTCTTAAT-ATTG-C----CAC-AA-AAGTTTCAACTAC
gi|124163 : TTG-A-CCT-TTAGATAACA-GG-TGAA----CAAAA-TAAAAATTACT-TTA-ATTCTCAGT-ATTG-C----TGC-AA-AAGTTTCAACAAC
gi|124164 : TTG-A-CCTGCAAAATAA---GG-AGAA----CAAAAATAAAAATTACT-TTACATTTTTATT--TTG-C----TAC-AG-CAGTTTCAACTAC
gi|124165 : TTG-A-CCT-TTAAATGAAA-GA-CGAA----CAAAA-TGAAAGTCACT-GGACATTCTCAAT-TTTGAC----TAC-A
gi|124166 : TG-A-CCT-CTAAATAAAA-TG-TGAA----CAAAA-TAAAAATTACT-TCACGTTCTCAGT-ATTG-C----TAC-AA-AAGTTTCAACT
gi|124167 : TG-A-ACT-CTAAATAAAA-TG-TGAA----CAAAA-TG-AAATTACT-TTTCAGTGACAGT-ATTA-C----TAC-AA-TAG
gi|124168 : CT-TTTAATAAAA-GGATGAA----TATAA-TGAAGACCACT-CCACATTTTCAGA-ATTG-C----TAC-AA-AGGTTTTAACTACgtctta
gi|124169 : aCT-CTTGATAAAATAG-TGAA----CAAAA-TAAAAATTACT-TTACATCCTTAGT-ATTG-C----TAC-GA-AAGTTTTATTTAC
gi|124170 : AAAA-GA-TGAA----CTAAA-TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AT-AAATTTCAAC
gi|124171 : AAAA-GA-TGAA----CTAA--TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AATAAATTTCAAC
blockSeqs : T A G T A TTCA A A G A A TTTT A TA
blockSeqs : . . . T . . . . G . . . . T
blockSeqs : . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . C . . . . A
blockSeqs : . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . C . . . . A
blockSeqs : . . . . . . . . T . . . . A
blockSeqs : . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . G . . . . A
blockSeqs : . . . . . . . . C . . . . A
blockSeqs : . . . . . . . . T . . . . C
blockSeqs : . . . . . . . . C . . . . A
blockSeqs : . . . . . . . . T . . . . T
blockSeqs : . . . . . . C . . . . A
blockSeqs : . . . . . . C . . . . A
blockSeqs : . . . . . . . . . . A
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
finalCons : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
Alignments
lowQualScore : 2 2 2 3 1 4444 1 1 2 1 1 4444 1 33
lowQualScore : . . . . . .... . . . . . .... . ..
lowQualScore : 4 4 1 8 9 0000 9 9 3 9 9 0000 9 00
consensus : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
Reference ( family-800 ) : TTTG-A-CCT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TNACATTCTCAGT-ATTG-C----TAC-AA-NAGTTTCAACTAC
gi|124151 : TTTG-A-ACT-CTAAATAAAA-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAACAAC
gi|124152 : TTTG-A-ACT-CTAAAAAAAT-GG-TGAA----CAAAA-TGAAAATTACT-TGACATTCTCAGTAATGG-C----TGC-AT-TAGTTTAAAC
gi|124153 : TTTG-AATCT-CTAAAAATAATGG-TGA-----CAAAA-TGAAAATTACT-TGACATTCTCAGT-ATTG-C----TGC-AT-TAGTTTAAAC
gi|124154 : TTTG-A-ACT-CTAAATTAAA-GG-TGAA----CAAAA-TAAAAATT------ACATTCTCAGT-ATTG-C----TACAAA-TAGTTTCAACTAC
gi|124155 : TTTGTA-CCT---AAATGTAA-GG-TGAA----CAAAA-TGAAAATTACT-TAACATTTTCAGT-ATTA-C----TAC-AA-AAGTTTCAA
gi|124156 : TTTG-A-CCT-CAAAATAAAA-CG-TTAA----CAAAA-TGAAAATTACT-TTACATTTTCACT-ATTG-C----TAC-AA-TAGTTTCAACTAC
gi|124157 : TTTG-A-CCT-CTAAATAAAA-GT-TGTA----CGAAC-TGAAAATTACC-TCACATTCTCAGT-ATTG-C----TAT-AA-TAGTTTCAACTAC
gi|124158 : TTTG-A-ATG-CTAAATAAAA-GG-TGAT----CAAAA-TAAAAATTACTAAAACATTCTCAAT-ATTG-CTTTTTAC-AA-TAGTTTCAACTAC
gi|124159 : TTTG-A-CCT-CTAAATAAAA-G--TGAA----CAAAA-----AATT-----TACATTCTCAGT-ATTG-C----TAC-TT-AAGTTTCAACTAC
gi|124160 : TTTG-A-CCT-CTACATAAAA-GG-TGAA----CAAAA-TGAAAATT------ACATTCTGAGT-ATTG-T----TGC-AA-AAGTGTC
gi|124161 : TTTT-A-CCT-CTAAAGAAAA-GG-TGAATTCACAAAA-TGAATATCGCT-TTACATTCTTGGT-ATTT-C----TAC-TA-TAGTTACAACT
gi|124162 : TTG-A-CCT-CTAAATAATA-GG-TGAA----TGGAA-TGAAAATTACT-TCACATTCTTAAT-ATTG-C----CAC-AA-AAGTTTCAACTAC
gi|124163 : TTG-A-CCT-TTAGATAACA-GG-TGAA----CAAAA-TAAAAATTACT-TTA-ATTCTCAGT-ATTG-C----TGC-AA-AAGTTTCAACAAC
gi|124164 : TTG-A-CCTGCAAAATAA---GG-AGAA----CAAAAATAAAAATTACT-TTACATTTTTATT--TTG-C----TAC-AG-CAGTTTCAACTAC
gi|124165 : TTG-A-CCT-TTAAATGAAA-GA-CGAA----CAAAA-TGAAAGTCACT-GGACATTCTCAAT-TTTGAC----TAC-A
gi|124166 : TG-A-CCT-CTAAATAAAA-TG-TGAA----CAAAA-TAAAAATTACT-TCACGTTCTCAGT-ATTG-C----TAC-AA-AAGTTTCAACT
gi|124167 : TG-A-ACT-CTAAATAAAA-TG-TGAA----CAAAA-TG-AAATTACT-TTTCAGTGACAGT-ATTA-C----TAC-AA-TAG
gi|124168 : CT-TTTAATAAAA-GGATGAA----TATAA-TGAAGACCACT-CCACATTTTCAGA-ATTG-C----TAC-AA-AGGTTTTAACTACgtctta
gi|124169 : aCT-CTTGATAAAATAG-TGAA----CAAAA-TAAAAATTACT-TTACATCCTTAGT-ATTG-C----TAC-GA-AAGTTTTATTTAC
gi|124170 : AAAA-GA-TGAA----CTAAA-TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AT-AAATTTCAAC
gi|124171 : AAAA-GA-TGAA----CTAA--TGAAAATTACT-TCGCATCCTCGGC-ATTG-C----TAC-AATAAATTTCAAC