lowQualScore : 2222222222222222222 11111
lowQualScore : 0 22 2 2 2 2 8888888888888888888 22 2 2 2 2 2 77777 44 77 2 8 2 2 2
lowQualScore : . .. . . . . ................... .. . . . . . ..... .. .. . . . . .
lowQualScore : 4 88 0 0 0 0 1111111111111111111 88 0 0 0 0 0 44444 88 55 0 0 4 4 4
consensus : TTTTTGATT--GA-CGAAGAA-T-A-T------------AT-TG--T--TTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-AT-CAGATCTCTCC-AT-ATA
Reference ( gi|128666 ) : TTTTTGATT--GA-CGAAGAA-T-A-T------------AT-T---T--TTA-C-G-AAGGA-GTT-GTC-T---GC--GAC--TG-AT-CAGATTTCTCC-AT-ATA
gi|128667 : TTTTTGATTTTGA-CGAAGAA-T-A-T------------AT-TG--T--TTA-C-G-ATCGG-GTT-GTC-T---GC--GAC--TG-AT-CAGATTTCTCC-AT-AT
gi|128660 : TTTTTTATT--GA-CGAAGAA-T-A-T------------AT-TA--T--TTA-T-G-AAAGA-GTT-GTC-A---GC--GAC--TG-AT-CATATCTCTCC-AT-ATA
gi|128659 : TTTTTTATT--GA-CGAAGAA-T-A-T------------TT-TG--T--TTA-C-A-AAGGA-GTT-GTC-A---GC--GAC--TG-AT-CAGATCTCTCT-AT-ATA
gi|128668 : TTTTTAATT--GA-CGATGAA-T-G-T------------AT-TG--T--TTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-AG-CAGATCTCTCC-AT-GTA
gi|128662 : tTTTTTTATT--GA--AAAGAA-TTA-T------------AT-T---G--TTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-AT-CAGATCTCTCC-AT-ATA
gi|128669 : TTTTTGATT--GA-CGAAGAA-T-A-T------------AT-TG--T--TTA-C-G-AAGGA-GTT-GCCAA---GC--GACTGTG-AT-CAAATCTCTCC-AA-ATA
gi|128670 : TTTTTGATT--GG-CGAAGAA-T-A-T------------ATGT---T--TTA-C-G-AAGGAGGTT-GTC-A---TT--GAC--TG-AT-CAGATCTCTC
gi|128671 : TTTTTGATT--GA-CGAAGAA-C-A-T------------AT-A---G--TTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-AT-CATATATATAT-AT-ATA
gi|128672 : TTTTTGATC--GAACGAAGAA-T-A-TG-----------AT-TG--T--TTA-CCG-TAGGA-GTT-GTC-CA--GC--GAC--TG-AGACAGATCTCTCC-AT-ATA
gi|128663 : TTTTTTATT--GA-AAAAGA--T-A-T------------AT-T---G--TTT-C-G-AAGGA-GTT-GTC-A---G---GACT-TG-AT-CAGATCTCTCC-AT-ATA
gi|128664 : TTTTTTAT----A-AAAAGAA-T-AAT------------AT-TG--T--TTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-ATCCAGATCTCTCCAAT-AT
gi|128665 : TTTTTTAT---AA-AAAAGAA-T-A-T------------AT-T---G--TTA-C-GGAAGGA-GTT-GTC-A---GC--GA---TG-ATCCAGATCTCTCC-AT-ATA
gi|128675 : TTTTGATT--GA-CGAAGAAAT-A-T------------AT-TG--T--TTA---A-AAGGA-GTTAGTC-T---GC--GAC--TG-AT-CAGATTT-TCC-AT-ATA
gi|128674 : TTTTGATT--GA-CAAAGAA-T-A-TTACACATGGA--ATAT---TGATTA-C-G-AAGGA-GTT-GTC-A---GC--GAC--TG-CT-CAGATCTCTTC-AT-AT
gi|128676 : TTTTGATT--GA-C-AAGAA-T-A-T------------AT-TGTTT--TTA-C-G-AAGGA-GTT-TTC-T---G---GAC--TG-AT--ACATTTC-CC-AT-
gi|128677 : TTTTGATT--GA-AGAAGAA-C-A-TTACACATATAATAT-TG--T--TTA-C-G-AAGGA-GTT-CTC-A---GC--GAT--TG-AT-CAG
gi|128678 : ATT--GA-CGAAGAA-T-A-T------------AT-T---G--TTAGC-G-AATGA-GTT-GTC-T---GC--GAC--TG-ATACAGATTTCTCC-AT-ACAgcccc
gi|128661 : ATT--GA-CGAAGAA-T-A-T------------AT-TA--T--TTA-T-G-AAAGA-GCT-ATG-TCAAACA-GAC--TG-AT-
gi|128673 : ttttaattTT--GA-CGAAT---T-A-T------------AT-TG--T--TTA-C-G-AGGGA-GT--GTC-A---GCCGGACACTG-AT-CAGATTTCTCC-ATGATAtcataactatcatcacata
gi|128679 : tttattatT--GA-CGAAGAA-T-A-T------------AT-TG--T--TTA-C-A-AAGGA-GTT-GCC-A---GC--AAC--TGAAC-CGGATCTCTCC-AT-ATA
Alignments
lowQualScore : 222222222222
lowQualScore : 22 1 1 1 1 111111111111 22 3 1 22 1 5 1 1 333 44 1 1 7 22 2
lowQualScore : .. . . . . ............ .. . . .. . . . . ... .. . . . .. .
lowQualScore : 66 9 9 9 9 444444444444 66 8 9 66 9 7 9 9 333 55 9 9 6 88 1
consensus : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
Reference ( family-799 ) : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128659 : TTTTTTATT--GA-CGAAGAA-T-A-T------------TTTG--TTTAC-AAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--TAT-ATA
gi|128660 : TTTTTTATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATCTCTC--CAT-ATA
gi|128661 : ATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GCTAT-GTCAAA-CAG---AC--TG-ATT-CATAACTATCATCAC-ATA
gi|128662 : ttttaattTTTTTTATT--GA--AAAGAA-TTA-T------------ATTG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128663 : TTTTTTATT--GA-AAAAGA--T-A-T------------ATTG--TTT-C-GAAGGA-GT--T-GTC-AG---G---ACT-TG-A-T-CAGATCTCTC--CAT-ATA
gi|128664 : TTTTTTAT----A-AAAAGAA-T-AAT------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-TCCAGATCTCTC--CA--ATA
gi|128665 : TTTTTTAT---AA-AAAAGAA-T-A-T------------ATTG---TTACGGAAGGA-GT--T-GTC-AG-C-G---A---TG-A-TCCAGATCTCTC--CAT-ATAt
gi|128666 : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATT---TTTAC-GAAGGA-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-ATA
gi|128667 : TTTTTGATTTTGA-CGAAGAA-T-A-T------------ATTG--TTTAC-GATCGG-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-AT
gi|128668 : TTTTTAATT--GA-CGATGAA-T-G-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-G-CAGATCTCTC--CAT-GTA
gi|128669 : tTTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GCCAAG-C-G---ACTGTG-A-T-CAAATCTCTC--CAA-ATA
gi|128670 : TTTTTGATT--GG-CGAAGAA-T-A-T------------ATGT--TTTAC-GAAGGAGGT--T-GTC-AT-T-G---AC--TG-A-T-CAGATCTCTC--
gi|128671 : TTTTTGATT--GA-CGAAGAA-C-A-T------------ATAG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATATATA--TAT-ATA
gi|128672 : TTTTTGATC--GAACGAAGAA-T-A-TG-----------ATTG--TTTACCGTAGGA-GT--T-GTCCAG-C-G---AC--TG-A-GACAGATCTCTC--CAT-ATA
gi|128673 : TT--GA-CGAAT---T-A-T------------ATTG--TTTAC-GAGGGA-G---T-GTC-AGCC-GGACAC--TG-A-T-CAGATTTCTC--CATGATA
gi|128674 : tttattatTTTTGATT--GA-CAAAGAA-T-A-TTACACATGGAATATTG--ATTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-C-T-CAGATCTCTT--CAT-AT
gi|128675 : TTTTGATT--GA-CGAAGAAAT-A-T------------ATTG--TTTA--AAAGGA-GT--TAGTC-TG-C-G---AC--TG-A-T-CAGAT-TTTC--CAT-ATA
gi|128676 : TTTTGATT--GA-C-AAGAA-T-A-T------------ATTGTTTTTAC-GAAGGA-GT--T-TTC-TG---G---AC--TG-A-T--ACATTTC-C--CAT-
gi|128677 : TTTTGATT--GA-AGAAGAA-C-A-TTACACATATAATATTG--TTTAC-GAAGGA-GT--T-CTC-AG-C-G---AT--TG-A-T-CAGGCCCC
gi|128678 : ATT--GA-CGAAGAA-T-A-T------------ATTG--TTAGC-GAATGA-GT--T-GTC-TG-C-G---AC--TG-A-TACAGATTTCTC--CAT-ACA
gi|128679 : T--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-AAAGGA-GT--T-GCC-AG-C-A---AC--TGAA-C-CGGATCTCTC--CAT-ATA
Alignments
lowQualScore : 222222222222
lowQualScore : 22 1 1 1 1 111111111111 22 3 1 22 1 5 1 1 333 44 1 1 7 22 2
lowQualScore : .. . . . . ............ .. . . .. . . . . ... .. . . . .. .
lowQualScore : 66 9 9 9 9 444444444444 66 8 9 66 9 7 9 9 333 55 9 9 6 88 1
consensus : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
Reference ( family-799 ) : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128659 : TTTTTTATT--GA-CGAAGAA-T-A-T------------TTTG--TTTAC-AAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--TAT-ATA
gi|128660 : TTTTTTATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATCTCTC--CAT-ATA
gi|128661 : ATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GCTAT-GTCAAA-CAG---AC--TG-ATT-CATAACTATCATCAC-ATA
gi|128662 : ttttaattTTTTTTATT--GA--AAAGAA-TTA-T------------ATTG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128663 : TTTTTTATT--GA-AAAAGA--T-A-T------------ATTG--TTT-C-GAAGGA-GT--T-GTC-AG---G---ACT-TG-A-T-CAGATCTCTC--CAT-ATA
gi|128664 : TTTTTTAT----A-AAAAGAA-T-AAT------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-TCCAGATCTCTC--CA--ATA
gi|128665 : TTTTTTAT---AA-AAAAGAA-T-A-T------------ATTG---TTACGGAAGGA-GT--T-GTC-AG-C-G---A---TG-A-TCCAGATCTCTC--CAT-ATAt
gi|128666 : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATT---TTTAC-GAAGGA-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-ATA
gi|128667 : TTTTTGATTTTGA-CGAAGAA-T-A-T------------ATTG--TTTAC-GATCGG-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-AT
gi|128668 : TTTTTAATT--GA-CGATGAA-T-G-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-G-CAGATCTCTC--CAT-GTA
gi|128669 : tTTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GCCAAG-C-G---ACTGTG-A-T-CAAATCTCTC--CAA-ATA
gi|128670 : TTTTTGATT--GG-CGAAGAA-T-A-T------------ATGT--TTTAC-GAAGGAGGT--T-GTC-AT-T-G---AC--TG-A-T-CAGATCTCTC--
gi|128671 : TTTTTGATT--GA-CGAAGAA-C-A-T------------ATAG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATATATA--TAT-ATA
gi|128672 : TTTTTGATC--GAACGAAGAA-T-A-TG-----------ATTG--TTTACCGTAGGA-GT--T-GTCCAG-C-G---AC--TG-A-GACAGATCTCTC--CAT-ATA
gi|128673 : TT--GA-CGAAT---T-A-T------------ATTG--TTTAC-GAGGGA-G---T-GTC-AGCC-GGACAC--TG-A-T-CAGATTTCTC--CATGATA
gi|128674 : tttattatTTTTGATT--GA-CAAAGAA-T-A-TTACACATGGAATATTG--ATTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-C-T-CAGATCTCTT--CAT-AT
gi|128675 : TTTTGATT--GA-CGAAGAAAT-A-T------------ATTG--TTTA--AAAGGA-GT--TAGTC-TG-C-G---AC--TG-A-T-CAGAT-TTTC--CAT-ATA
gi|128676 : TTTTGATT--GA-C-AAGAA-T-A-T------------ATTGTTTTTAC-GAAGGA-GT--T-TTC-TG---G---AC--TG-A-T--ACATTTC-C--CAT-
gi|128677 : TTTTGATT--GA-AGAAGAA-C-A-TTACACATATAATATTG--TTTAC-GAAGGA-GT--T-CTC-AG-C-G---AT--TG-A-T-CAGGCCCC
gi|128678 : ATT--GA-CGAAGAA-T-A-T------------ATTG--TTAGC-GAATGA-GT--T-GTC-TG-C-G---AC--TG-A-TACAGATTTCTC--CAT-ACA
gi|128679 : T--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-AAAGGA-GT--T-GCC-AG-C-A---AC--TGAA-C-CGGATCTCTC--CAT-ATA
blockSeqs : TT A A T A TACACATGGAAT TT G G TA A A C A GAC TG A T C AT G
blockSeqs : . . . . . TACACATATAAT . C . . . A . . . T . . C . .
blockSeqs : . . . . . G . . . . . C . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
finalCons : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
Alignments
lowQualScore : 222222222222
lowQualScore : 22 1 1 1 1 111111111111 22 3 1 22 1 5 1 1 333 44 1 1 7 22 2
lowQualScore : .. . . . . ............ .. . . .. . . . . ... .. . . . .. .
lowQualScore : 66 9 9 9 9 444444444444 66 8 9 66 9 7 9 9 333 55 9 9 6 88 1
consensus : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
Reference ( family-799 ) : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128659 : TTTTTTATT--GA-CGAAGAA-T-A-T------------TTTG--TTTAC-AAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--TAT-ATA
gi|128660 : TTTTTTATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATCTCTC--CAT-ATA
gi|128661 : ATT--GA-CGAAGAA-T-A-T------------ATTA--TTTAT-GAAAGA-GCTAT-GTCAAA-CAG---AC--TG-ATT-CATAACTATCATCAC-ATA
gi|128662 : ttttaattTTTTTTATT--GA--AAAGAA-TTA-T------------ATTG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CAGATCTCTC--CAT-ATA
gi|128663 : TTTTTTATT--GA-AAAAGA--T-A-T------------ATTG--TTT-C-GAAGGA-GT--T-GTC-AG---G---ACT-TG-A-T-CAGATCTCTC--CAT-ATA
gi|128664 : TTTTTTAT----A-AAAAGAA-T-AAT------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-TCCAGATCTCTC--CA--ATA
gi|128665 : TTTTTTAT---AA-AAAAGAA-T-A-T------------ATTG---TTACGGAAGGA-GT--T-GTC-AG-C-G---A---TG-A-TCCAGATCTCTC--CAT-ATAt
gi|128666 : TTTTTGATT--GA-CGAAGAA-T-A-T------------ATT---TTTAC-GAAGGA-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-ATA
gi|128667 : TTTTTGATTTTGA-CGAAGAA-T-A-T------------ATTG--TTTAC-GATCGG-GT--T-GTC-TG-C-G---AC--TG-A-T-CAGATTTCTC--CAT-AT
gi|128668 : TTTTTAATT--GA-CGATGAA-T-G-T------------ATTG--TTTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-G-CAGATCTCTC--CAT-GTA
gi|128669 : tTTTTTGATT--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-GAAGGA-GT--T-GCCAAG-C-G---ACTGTG-A-T-CAAATCTCTC--CAA-ATA
gi|128670 : TTTTTGATT--GG-CGAAGAA-T-A-T------------ATGT--TTTAC-GAAGGAGGT--T-GTC-AT-T-G---AC--TG-A-T-CAGATCTCTC--
gi|128671 : TTTTTGATT--GA-CGAAGAA-C-A-T------------ATAG--TT-AC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-A-T-CATATATATA--TAT-ATA
gi|128672 : TTTTTGATC--GAACGAAGAA-T-A-TG-----------ATTG--TTTACCGTAGGA-GT--T-GTCCAG-C-G---AC--TG-A-GACAGATCTCTC--CAT-ATA
gi|128673 : TT--GA-CGAAT---T-A-T------------ATTG--TTTAC-GAGGGA-G---T-GTC-AGCC-GGACAC--TG-A-T-CAGATTTCTC--CATGATA
gi|128674 : tttattatTTTTGATT--GA-CAAAGAA-T-A-TTACACATGGAATATTG--ATTAC-GAAGGA-GT--T-GTC-AG-C-G---AC--TG-C-T-CAGATCTCTT--CAT-AT
gi|128675 : TTTTGATT--GA-CGAAGAAAT-A-T------------ATTG--TTTA--AAAGGA-GT--TAGTC-TG-C-G---AC--TG-A-T-CAGAT-TTTC--CAT-ATA
gi|128676 : TTTTGATT--GA-C-AAGAA-T-A-T------------ATTGTTTTTAC-GAAGGA-GT--T-TTC-TG---G---AC--TG-A-T--ACATTTC-C--CAT-
gi|128677 : TTTTGATT--GA-AGAAGAA-C-A-TTACACATATAATATTG--TTTAC-GAAGGA-GT--T-CTC-AG-C-G---AT--TG-A-T-CAGGCCCC
gi|128678 : ATT--GA-CGAAGAA-T-A-T------------ATTG--TTAGC-GAATGA-GT--T-GTC-TG-C-G---AC--TG-A-TACAGATTTCTC--CAT-ACA
gi|128679 : T--GA-CGAAGAA-T-A-T------------ATTG--TTTAC-AAAGGA-GT--T-GCC-AG-C-A---AC--TGAA-C-CGGATCTCTC--CAT-ATA