lowQualScore : 1
lowQualScore : 2 2 2 1 3 6 1 22 22 1 1
lowQualScore : . . . . . . . .. .. . .
lowQualScore : 2 1 0 9 8 3 9 66 55 9 9
consensus : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
Reference ( gi|132346 ) : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTTCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132348 : TTT-GT-AATTTAA-TGCATATTG-A-TGCTGCACAG-TAACAAA--TTTGAAC-TTTATA-CATATCAG-ACAAGATA
gi|132349 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAAATTTTGAAT-TTTATA-CACATCAGAACAAGATA
gi|132344 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TCACAAA--TATGAAC-ATTATA-CACATCAG-ACAATATA
gi|132347 : TTC-GT-AATTAAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--ATTGAAC-ATTATA-CACATCAG-ACAAGATA
gi|132351 : TTT-GT-AATTTAA-TGCATTTCA-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CATATGAG-ACTAGATA
gi|132352 : TTT-GT-AATTTAA-TGCATTTTG-AATGCTGAACAA-TCACAAA--TTTGAAC-TTTAAA-CACATCAG-GCAAGATA
gi|132353 : TTT-GT-AATTCAA-TGCATTTTG-T-TGCTGCACAG-TAACAAA--TTTGAAC-TATATA-CATATCAG-ACAAGATA
gi|132356 : TTC-AT-AATTTAA-TGCATTTTG-A-TGCCGCACAG-TCACAAA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132350 : TTT-GTTAATTT---TGCATTTTG-A-TGCCGTACAG-TCACAAA--TATGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132345 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TC-CAAA--TATGAAC-ATTATA-CACATCAG-ACAATAT
gi|132357 : TTT-GT-AATTTAA-TGCACTATG-A-TGCTGCACAG-CCACACA--TTTGAAC-TTCACA-CATATCAG-ACAAGACA
gi|132358 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCT--GCAG-TCACAAA--TTTGAAT-TTTATA-CACATTGG-
gi|132359 : TTC-GT-AATTTAA-TGCATTTTA-A-TGCT--GCAG-TCACAGA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132360 : TTTAGT-AATTCAA-TGCATTTTA-AACACTGCCCAG-TAACAAA--TTTGAAC-TTTACA-CACATCAG-ACAAGATA
gi|132361 : TTT-GT-AATTTAA-TGCATTTTGAA-TGC-TGACAG-TCACCAA--TTTGAGC-TTTACA-TATATCAG-A-AAGATA
gi|132355 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132354 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132363 : T-GT-AA---AAGTGCATT--G-A-TGCTGCACAG-TCACAGA--TTTGAAC-TTTATA-CACATCAG-GCAAGACA
gi|132364 : -AATTT---TGCATTTTG-A-TACTGCACAGTTCACAAA--TATGAAA--TTATA-CACATAGG-ACAAAGTA
gi|132365 : TTAA----ATTTTG-A-TGCTACACAG-TCACAAA--TATGAAC-ATTATA-CACATTAG-ACAAGATA
gi|132362 : TTTA-A-TGCTGCACAG-TCACAAA--TATGAACATATATACCACATCAG-ACAAGATA
Alignments
lowQualScore : 2 2 1 1 3 1 22 22 1 1
lowQualScore : . . . . . . .. .. . .
lowQualScore : 1 0 9 8 6 8 55 00 8 8
consensus : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
Reference ( family-773 ) : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132344 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TCACAAA--TATGAAC-ATTATA-CACATCAG-ACAATATA
gi|132345 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TC-CAAA--TATGAAC-ATTATA-CACATCAG-ACAATAT
gi|132346 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTTCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132347 : TTC-GT-AATTAAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--ATTGAAC-ATTATA-CACATCAG-ACAAGATA
gi|132348 : TTT-GT-AATTTAA-TGCATATTG-A-TGCTGCACAG-TAACAAA--TTTGAAC-TTTATA-CATATCAG-ACAAGATA
gi|132349 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAAATTTTGAAT-TTTATA-CACATCAGAACAAGATA
gi|132350 : TTT-GTTAATTT---TGCATTTTG-A-TGCCGTACAG-TCACAAA--TATGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132351 : TTT-GT-AATTTAA-TGCATTTCA-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CATATGAG-ACTAGATA
gi|132352 : TTT-GT-AATTTAA-TGCATTTTG-AATGCTGAACAA-TCACAAA--TTTGAAC-TTTAAA-CACATCAG-GCAAGATA
gi|132353 : TTT-GT-AATTCAA-TGCATTTTG-T-TGCTGCACAG-TAACAAA--TTTGAAC-TATATA-CATATCAG-ACAAGATA
gi|132354 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132355 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132356 : TTC-AT-AATTTAA-TGCATTTTG-A-TGCCGCACAG-TCACAAA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132357 : TTT-GT-AATTTAA-TGCACTATG-A-TGCTGCACAG-CCACACA--TTTGAAC-TTCACA-CATATCAG-ACAAGACA
gi|132358 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTG--CAG-TCACAAA--TTTGAAT-TTTATA-CACATTGG-
gi|132359 : TTC-GT-AATTTAA-TGCATTTTA-A-TGCTGCA--G-TCACAGA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132360 : TTTAGT-AATTCAA-TGCATTTTA-AACACTGCCCAG-TAACAAA--TTTGAAC-TTTACA-CACATCAG-ACAAGATA
gi|132361 : TTT-GT-AATTTAA-TGCATTTTGAA-TGCTG-ACAG-TCACCAA--TTTGAGC-TTTACA-TATATCAG-A-AAGATA
gi|132362 : TTTA-A-TGCTGCACAG-TCACAAA--TATGAACATATATACCACATCAG-ACAAGATA
gi|132363 : ttgctaatttcgttaT-GT-AA---AAGTGCATT--G-A-TGCTGCACAG-TCACAGA--TTTGAAC-TTTATA-CACATCAG-GCAAGACA
gi|132364 : -AATTT---TGCATTTTG-A-TACTGCACAGTTCACAAA--TATGAAA--TTATA-CACATAGG-ACAAAGTA
gi|132365 : TTAA----ATTTTG-A-TGCTACACAG-TCACAAA--TATGAAC-ATTATA-CACATTAG-ACAAGATA
Alignments
lowQualScore : 2 2 1 1 3 1 22 22 1 1
lowQualScore : . . . . . . .. .. . .
lowQualScore : 1 0 9 8 6 8 55 00 8 8
consensus : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
Reference ( family-773 ) : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132344 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TCACAAA--TATGAAC-ATTATA-CACATCAG-ACAATATA
gi|132345 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TC-CAAA--TATGAAC-ATTATA-CACATCAG-ACAATAT
gi|132346 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTTCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132347 : TTC-GT-AATTAAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--ATTGAAC-ATTATA-CACATCAG-ACAAGATA
gi|132348 : TTT-GT-AATTTAA-TGCATATTG-A-TGCTGCACAG-TAACAAA--TTTGAAC-TTTATA-CATATCAG-ACAAGATA
gi|132349 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAAATTTTGAAT-TTTATA-CACATCAGAACAAGATA
gi|132350 : TTT-GTTAATTT---TGCATTTTG-A-TGCCGTACAG-TCACAAA--TATGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132351 : TTT-GT-AATTTAA-TGCATTTCA-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CATATGAG-ACTAGATA
gi|132352 : TTT-GT-AATTTAA-TGCATTTTG-AATGCTGAACAA-TCACAAA--TTTGAAC-TTTAAA-CACATCAG-GCAAGATA
gi|132353 : TTT-GT-AATTCAA-TGCATTTTG-T-TGCTGCACAG-TAACAAA--TTTGAAC-TATATA-CATATCAG-ACAAGATA
gi|132354 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132355 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132356 : TTC-AT-AATTTAA-TGCATTTTG-A-TGCCGCACAG-TCACAAA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132357 : TTT-GT-AATTTAA-TGCACTATG-A-TGCTGCACAG-CCACACA--TTTGAAC-TTCACA-CATATCAG-ACAAGACA
gi|132358 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTG--CAG-TCACAAA--TTTGAAT-TTTATA-CACATTGG-
gi|132359 : TTC-GT-AATTTAA-TGCATTTTA-A-TGCTGCA--G-TCACAGA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132360 : TTTAGT-AATTCAA-TGCATTTTA-AACACTGCCCAG-TAACAAA--TTTGAAC-TTTACA-CACATCAG-ACAAGATA
gi|132361 : TTT-GT-AATTTAA-TGCATTTTGAA-TGCTG-ACAG-TCACCAA--TTTGAGC-TTTACA-TATATCAG-A-AAGATA
gi|132362 : TTTA-A-TGCTGCACAG-TCACAAA--TATGAACATATATACCACATCAG-ACAAGATA
gi|132363 : ttgctaatttcgttaT-GT-AA---AAGTGCATT--G-A-TGCTGCACAG-TCACAGA--TTTGAAC-TTTATA-CACATCAG-GCAAGACA
gi|132364 : -AATTT---TGCATTTTG-A-TACTGCACAGTTCACAAA--TATGAAA--TTATA-CACATAGG-ACAAAGTA
gi|132365 : TTAA----ATTTTG-A-TGCTACACAG-TCACAAA--TATGAAC-ATTATA-CACATTAG-ACAAGATA
blockSeqs : A T G A A T AT AT C A
blockSeqs : . . . . A . . A . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . A . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . A . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
finalCons : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
Alignments
lowQualScore : 2 2 1 1 3 1 22 22 1 1
lowQualScore : . . . . . . .. .. . .
lowQualScore : 1 0 9 8 6 8 55 00 8 8
consensus : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
Reference ( family-773 ) : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132344 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TCACAAA--TATGAAC-ATTATA-CACATCAG-ACAATATA
gi|132345 : TTT-GT-AATTTAA-TGCATCTTG-A-TGCTGCACAG-TC-CAAA--TATGAAC-ATTATA-CACATCAG-ACAATAT
gi|132346 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTTCACAG-TCACAAA--TTTGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132347 : TTC-GT-AATTAAA-TGCATTTTG-A-TGCTGCACAG-TCACAAA--ATTGAAC-ATTATA-CACATCAG-ACAAGATA
gi|132348 : TTT-GT-AATTTAA-TGCATATTG-A-TGCTGCACAG-TAACAAA--TTTGAAC-TTTATA-CATATCAG-ACAAGATA
gi|132349 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTGCACAG-TCACAAAATTTTGAAT-TTTATA-CACATCAGAACAAGATA
gi|132350 : TTT-GTTAATTT---TGCATTTTG-A-TGCCGTACAG-TCACAAA--TATGAAC-TTTATA-CACATCAG-ACAAGATA
gi|132351 : TTT-GT-AATTTAA-TGCATTTCA-A-TGCTGCACAG-TCACAAA--TTTGAAC-TTTATA-CATATGAG-ACTAGATA
gi|132352 : TTT-GT-AATTTAA-TGCATTTTG-AATGCTGAACAA-TCACAAA--TTTGAAC-TTTAAA-CACATCAG-GCAAGATA
gi|132353 : TTT-GT-AATTCAA-TGCATTTTG-T-TGCTGCACAG-TAACAAA--TTTGAAC-TATATA-CATATCAG-ACAAGATA
gi|132354 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132355 : TTT-GT-AATT-AA-TGCATTTTG---TGCTGCACAG-TCACAAA--TTGAAA----TATA-CATATCAG-ACAA-ATA
gi|132356 : TTC-AT-AATTTAA-TGCATTTTG-A-TGCCGCACAG-TCACAAA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132357 : TTT-GT-AATTTAA-TGCACTATG-A-TGCTGCACAG-CCACACA--TTTGAAC-TTCACA-CATATCAG-ACAAGACA
gi|132358 : TTT-GT-AATTTAA-TGCATTTTG-A-TGCTG--CAG-TCACAAA--TTTGAAT-TTTATA-CACATTGG-
gi|132359 : TTC-GT-AATTTAA-TGCATTTTA-A-TGCTGCA--G-TCACAGA--TTTGAAC-TTTATA-CACAATAG-ATAAGACA
gi|132360 : TTTAGT-AATTCAA-TGCATTTTA-AACACTGCCCAG-TAACAAA--TTTGAAC-TTTACA-CACATCAG-ACAAGATA
gi|132361 : TTT-GT-AATTTAA-TGCATTTTGAA-TGCTG-ACAG-TCACCAA--TTTGAGC-TTTACA-TATATCAG-A-AAGATA
gi|132362 : TTTA-A-TGCTGCACAG-TCACAAA--TATGAACATATATACCACATCAG-ACAAGATA
gi|132363 : ttgctaatttcgttaT-GT-AA---AAGTGCATT--G-A-TGCTGCACAG-TCACAGA--TTTGAAC-TTTATA-CACATCAG-GCAAGACA
gi|132364 : -AATTT---TGCATTTTG-A-TACTGCACAGTTCACAAA--TATGAAA--TTATA-CACATAGG-ACAAAGTA
gi|132365 : TTAA----ATTTTG-A-TGCTACACAG-TCACAAA--TATGAAC-ATTATA-CACATTAG-ACAAGATA