lowQualScore : 3 1 1 1 1 1 1 7 333 1 1 22 3 3 22 1
lowQualScore : . . . . . . . . ... . . .. . . .. .
lowQualScore : 9 7 7 7 7 7 7 0 000 7 7 44 8 8 66 9
consensus : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTC--AAACC-T-T--TT-GTATAT
Reference ( gi|121560 ) : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTC--AAACC-T-T--TT-GTATAT
gi|121561 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTC--AAACC-T-T--TTCGTATAT
gi|121562 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTC--GAACC-T-T--TT-GTGT
gi|121563 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTATAAC---TT-G-TATTC--GAACC-G-T--TT-GTATAT
gi|121564 : TCAAGGTGAGAACGC-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTC--GAAC----T--TT-GTATAT
gi|121566 : TCAAGGTGAGAAC-CAT-CGT-AAGCTT-GTCAGAAC---TT-G-TGATTAAAAACC-T-T--TT-GTATAT
gi|121565 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTCGAAT---CT-G-TGTTC--AAACT-T-A--TT-GTGTAT
gi|121567 : TCAAGGTGAAAAC-T-TTCGT-CAG-TT-GTTAGAAC---TTAG-TGTTC--GAACTAT-C--TT-GTATAT
gi|121570 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTCC--AAACC-T-T--TT-GTATAT
gi|121571 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-GTTGTTC--AAACC-T-T--TT-GTATAT
gi|121572 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTC--AACCCTT-T--TT-GTATA
gi|121573 : AGGTGAGA-C-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTC--AAACC-T-T--TT-GTGTAT
gi|121574 : AGGTGAGAAC---T-CGT-AAG-TT-GTAAGAAC---TT-G-TGCTC--AAACC-T-T--TT-GTATAT
gi|121575 : AGTTGAGAAC-C-C-CGT-AAG-TT-GTAAGAAA---TT-G-TGTTC--AAACC-T-T--TT-GTATAT
gi|121576 : AGGTGAAAAC-C-T-CCC-AAG-TT-GTAAGAAC---TT-G-TGTTC--AAACC-T-T--TT-GTATGT
gi|121577 : AGGTGAGAAC-T-T-AGT-AAG-TT-GTAAGAAC---TT-A-TGTTC--AAACC-C-T--TT-GTATAT
gi|121568 : AGGTGAGAAC-C-G-CGT-AAG-TT--TTAGACC---TT-T-TGTTC--AAACC-T-A--TT-ATATAT
gi|121569 : tctAGGTGAGAGC-C-T-CGT-AAG-TT-GTTAAAAC---TT-T-TATAC--AAACC-TAA--CT-GTATAT
gi|121578 : tctAGGCGAGAGC-C-T-CGT-AAG-TT-GTTAGAACTTTTT-G-TGTAT--AAA-C-T-TAATT-GTATAT
gi|121579 : GGTGAGAAC-C-T-CGT-AAG-TTTGTCAGAAC---TT-G-TGTTC--AAAC
gi|121580 : AC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTC--AAACC-T-T--TT-GT
gi|121581 : AC-C-A-CGTTAAG-TG-GTTAGAAC---TT-G-TGCCC--AAACC-T-T--TT-CTATAT
gi|121583 : C-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTC--AAA
gi|121582 : C-C-T-CGT-AAA-TT-GTTAGAAC---TT-T-TGTTC--AAACC-TAA--TT-GTATAT
Alignments
lowQualScore : 1 1 1 1 1 1 1 222 1 1 22 3 3 22 1
lowQualScore : . . . . . . . ... . . .. . . .. .
lowQualScore : 7 7 7 7 7 7 0 999 7 7 33 6 6 55 8
consensus : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
Reference ( family-746 ) : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121560 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121561 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAA--CC-T-T--TTCGTATAT
gi|121562 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--CC-T-T--TT-GTGT
gi|121563 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTATAAC---TT-G-TATTCGAA--CC-G-T--TT-GTATAT
gi|121564 : TCAAGGTGAGAACGC-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--C----T--TT-GTATAT
gi|121565 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTCGAAT---CT-G-TGTTCAAA--CT-T-A--TT-GTGTAT
gi|121566 : TCAAGGTGAGAAC-CAT-CGT-AAGCTT-GTCAGAAC---TT-G-TGATTAAAAACC-T-T--TT-GTATAT
gi|121567 : TCAAGGTGAAAAC-T-TTCGT-CAG-TT-GTTAGAAC---TTAG-TGTTCGAA--CTAT-C--TT-GTATAT
gi|121568 : TCTAGGTGAGAAC-C-G-CGT-AAG-TT--TTAGACC---TT-T-TGTTCAAA--CC-T-A--TT-ATATAT
gi|121569 : TCTAGGTGAGAGC-C-T-CGT-AAG-TT-GTTAAAAC---TT-T-TATACAAA--CC-TAA--CT-GTATAT
gi|121570 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTCCAAA--CC-T-T--TT-GTATAT
gi|121571 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-GTTGTTCAAA--CC-T-T--TT-GTATAT
gi|121572 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAC--CCTT-T--TT-GTATA
gi|121573 : AGGTGAGA-C-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTGTAT
gi|121574 : AGGTGAGAAC---T-CGT-AAG-TT-GTAAGAAC---TT-G-TGCTCAAA--CC-T-T--TT-GTATAT
gi|121575 : AGTTGAGAAC-C-C-CGT-AAG-TT-GTAAGAAA---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121576 : AGGTGAAAAC-C-T-CCC-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATGT
gi|121577 : AGGTGAGAAC-T-T-AGT-AAG-TT-GTAAGAAC---TT-A-TGTTCAAA--CC-C-T--TT-GTATAT
gi|121578 : AGGCGAGAGC-C-T-CGT-AAG-TT-GTTAGAACTTTTT-G-TGTATAAA---C-T-TAATT-GTATAT
gi|121579 : GGTGAGAAC-C-T-CGT-AAG-TTTGTCAGAAC---TT-G-TGTTCAAA--C
gi|121580 : AC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GT
gi|121581 : AC-C-A-CGTTAAG-TG-GTTAGAAC---TT-G-TGCCCAAA--CC-T-T--TT-CTATAT
gi|121582 : C-C-T-CGT-AAA-TT-GTTAGAAC---TT-T-TGTTCAAA--CC-TAA--TT-GTATAT
gi|121583 : C-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--
Alignments
lowQualScore : 1 1 1 1 1 1 1 222 1 1 22 3 3 22 1
lowQualScore : . . . . . . . ... . . .. . . .. .
lowQualScore : 7 7 7 7 7 7 0 999 7 7 33 6 6 55 8
consensus : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
Reference ( family-746 ) : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121560 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121561 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAA--CC-T-T--TTCGTATAT
gi|121562 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--CC-T-T--TT-GTGT
gi|121563 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTATAAC---TT-G-TATTCGAA--CC-G-T--TT-GTATAT
gi|121564 : TCAAGGTGAGAACGC-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--C----T--TT-GTATAT
gi|121565 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTCGAAT---CT-G-TGTTCAAA--CT-T-A--TT-GTGTAT
gi|121566 : TCAAGGTGAGAAC-CAT-CGT-AAGCTT-GTCAGAAC---TT-G-TGATTAAAAACC-T-T--TT-GTATAT
gi|121567 : TCAAGGTGAAAAC-T-TTCGT-CAG-TT-GTTAGAAC---TTAG-TGTTCGAA--CTAT-C--TT-GTATAT
gi|121568 : TCTAGGTGAGAAC-C-G-CGT-AAG-TT--TTAGACC---TT-T-TGTTCAAA--CC-T-A--TT-ATATAT
gi|121569 : TCTAGGTGAGAGC-C-T-CGT-AAG-TT-GTTAAAAC---TT-T-TATACAAA--CC-TAA--CT-GTATAT
gi|121570 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTCCAAA--CC-T-T--TT-GTATAT
gi|121571 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-GTTGTTCAAA--CC-T-T--TT-GTATAT
gi|121572 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAC--CCTT-T--TT-GTATA
gi|121573 : AGGTGAGA-C-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTGTAT
gi|121574 : AGGTGAGAAC---T-CGT-AAG-TT-GTAAGAAC---TT-G-TGCTCAAA--CC-T-T--TT-GTATAT
gi|121575 : AGTTGAGAAC-C-C-CGT-AAG-TT-GTAAGAAA---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121576 : AGGTGAAAAC-C-T-CCC-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATGT
gi|121577 : AGGTGAGAAC-T-T-AGT-AAG-TT-GTAAGAAC---TT-A-TGTTCAAA--CC-C-T--TT-GTATAT
gi|121578 : AGGCGAGAGC-C-T-CGT-AAG-TT-GTTAGAACTTTTT-G-TGTATAAA---C-T-TAATT-GTATAT
gi|121579 : GGTGAGAAC-C-T-CGT-AAG-TTTGTCAGAAC---TT-G-TGTTCAAA--C
gi|121580 : AC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GT
gi|121581 : AC-C-A-CGTTAAG-TG-GTTAGAAC---TT-G-TGCCCAAA--CC-T-T--TT-CTATAT
gi|121582 : C-C-T-CGT-AAA-TT-GTTAGAAC---TT-T-TGTTCAAA--CC-TAA--TT-GTATAT
gi|121583 : C-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--
blockSeqs : G A T T C T T TTT A T AA A A AA C
blockSeqs : . . . . . . T . . . . T A . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . .
blockSeqs : . . . . . . C . . . .
blockSeqCons :
originalCons : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
finalCons : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
Alignments
lowQualScore : 1 1 1 1 1 1 1 222 1 1 22 3 3 22 1
lowQualScore : . . . . . . . ... . . .. . . .. .
lowQualScore : 7 7 7 7 7 7 0 999 7 7 33 6 6 55 8
consensus : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
Reference ( family-746 ) : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTNAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121560 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121561 : TTAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAA--CC-T-T--TTCGTATAT
gi|121562 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--CC-T-T--TT-GTGT
gi|121563 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTATAAC---TT-G-TATTCGAA--CC-G-T--TT-GTATAT
gi|121564 : TCAAGGTGAGAACGC-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCGAA--C----T--TT-GTATAT
gi|121565 : TCAAGGTGAGAAC-C-T-CGT-AAG-TT-GTTCGAAT---CT-G-TGTTCAAA--CT-T-A--TT-GTGTAT
gi|121566 : TCAAGGTGAGAAC-CAT-CGT-AAGCTT-GTCAGAAC---TT-G-TGATTAAAAACC-T-T--TT-GTATAT
gi|121567 : TCAAGGTGAAAAC-T-TTCGT-CAG-TT-GTTAGAAC---TTAG-TGTTCGAA--CTAT-C--TT-GTATAT
gi|121568 : TCTAGGTGAGAAC-C-G-CGT-AAG-TT--TTAGACC---TT-T-TGTTCAAA--CC-T-A--TT-ATATAT
gi|121569 : TCTAGGTGAGAGC-C-T-CGT-AAG-TT-GTTAAAAC---TT-T-TATACAAA--CC-TAA--CT-GTATAT
gi|121570 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTCCAAA--CC-T-T--TT-GTATAT
gi|121571 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTAAGAAC---TT-GTTGTTCAAA--CC-T-T--TT-GTATAT
gi|121572 : AGGTGAGAAC-C-T-CGT-AAG-TT-GTTAGAAC---TT-G-TGTTCAAC--CCTT-T--TT-GTATA
gi|121573 : AGGTGAGA-C-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTGTAT
gi|121574 : AGGTGAGAAC---T-CGT-AAG-TT-GTAAGAAC---TT-G-TGCTCAAA--CC-T-T--TT-GTATAT
gi|121575 : AGTTGAGAAC-C-C-CGT-AAG-TT-GTAAGAAA---TT-G-TGTTCAAA--CC-T-T--TT-GTATAT
gi|121576 : AGGTGAAAAC-C-T-CCC-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GTATGT
gi|121577 : AGGTGAGAAC-T-T-AGT-AAG-TT-GTAAGAAC---TT-A-TGTTCAAA--CC-C-T--TT-GTATAT
gi|121578 : AGGCGAGAGC-C-T-CGT-AAG-TT-GTTAGAACTTTTT-G-TGTATAAA---C-T-TAATT-GTATAT
gi|121579 : GGTGAGAAC-C-T-CGT-AAG-TTTGTCAGAAC---TT-G-TGTTCAAA--C
gi|121580 : AC-C-T-CGT-AAG-TT-GTAAGAAC---TT-G-TGTTCAAA--CC-T-T--TT-GT
gi|121581 : AC-C-A-CGTTAAG-TG-GTTAGAAC---TT-G-TGCCCAAA--CC-T-T--TT-CTATAT
gi|121582 : C-C-T-CGT-AAA-TT-GTTAGAAC---TT-T-TGTTCAAA--CC-TAA--TT-GTATAT
gi|121583 : C-C-T-CGT-AAG-TT-GTCAGAAC---TT-G-TGTTCAAA--