lowQualScore : 22 1 1 222 1 1 1 1 1 22 44 1 555 22 22 1
lowQualScore : .. . . ... . . . . . .. .. . ... .. .. .
lowQualScore : 33 7 7 999 7 7 7 7 8 55 33 9 222 66 66 9
consensus : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
Reference ( gi|67230 ) : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67232 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67231 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67233 : TACGAAAG--CCC-AG-A---AG-CT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67234 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-ATA--TCA--AAA--T-TCGAAAT
gi|67236 : TACGAAAG--CCC-AG-A---AGGCTGCA-T-TCGACA-TTC-TAAATT--C--AAA-AT---C----AAA--T-TCGAAA
gi|67235 : TACGAAAG--CCCCAG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--TCAAAA-AT---CCA--AAA--T-TCGAAA
gi|67238 : TACGAAAG--CCC-AGCA---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-TC---TCA--AAA--T-TCGAAAT
gi|67239 : TACGAAAC--TCC-AG-A---AGGCT-CA-T-TCGACA-TTC-GAAATT--C--AAA-AT---TCG--AAA--T-CCAAGAT
gi|67237 : TACGAAAG--CC--AG-A---AG-CT-CA-T-TC-ACA-TTC-TAAATT--C--AAAGAT---CCA--AAA--T-TCGAAA
gi|67242 : TACGAAAC--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--A
gi|67241 : TACGAAAT--CCC-AG-A---AGGCT-CA-T-TCGAGA-TTC-AGAATC--C--GAA-AT---CTA--AGA--T-TCGAGAT
gi|67243 : TACAAAAG--CCC-AG-TTCTAGGCT-CA-T-TTAACA-TTC-GAAATA--C--AAA-AT---CCG--AGA--T-TCGAAAT
gi|67244 : TACGGAAG--CCC-AG-A---AGGCT-CA-T-TCGAAA-TTC-AAAACT--C------AT---TCG--AAA--T-TCAAA
gi|67245 : TACGAAAGAGCCC-A--A---AGGCT--A-T-TCGAC---TC-TAA-TT--C--AAA-AT---CCA--AAAACT-TCGAAAT
gi|67246 : TACACAAT--TCC-AA-A---AAGCT-CA-T-TCCAAA-TTC-CAAATT--C--AAA-AT---CCG--AGA--T-TCGGAAT
gi|67240 : TAAGAAAA--CCT-AT-A---AGGTT-CA-T-TCGACA-TTC-CAAATT--C--ACA-AT---ATA--AAA--TGGCGAAGT
gi|67247 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-
gi|67248 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCAACA-T
gi|67249 : ACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTCTTAAATTTCC--AAA-AT---CCA--AAA--T-TCGAA
gi|67250 : ACGAAAG--CC--AG-A---AGGCT-CAAT-TCGACA-TTC-TAAATT--CA-AAA-AT---CCA--AAA--T-TCGAAAT
gi|67251 : ACGAAAG--GCC-AG-A---AGGCT-CA-T-TCGACA-TTC-AAAATT--C--AAA-AT---CTG--AAA--T-ACGAAAT
gi|67252 : CGTAAG--CCC-AG-A---AGGCT-CA-TATCGACATTTC-TAAA-T--C--AAA-ATCACCCAACAAA--T-TCGGAA
gi|67253 : CGAA-----CC-AG-A-----GCT-CA-T-TCGACA--TC-TAAATT--C---AA-AT---CCA--AA-----TCGAAAT
gi|67254 : GAAAG--CCC-AG-A---AGGCT-AA-T-TCGACA-TTC-TAGATT--C--CAA-AT---CCA--AAC--T-TCGGAA
Alignments
lowQualScore : 22 1 1 222 1 1 1 1 1 22 44 1 555 22 22 1
lowQualScore : .. . . ... . . . . . .. .. . ... .. .. .
lowQualScore : 22 6 6 888 6 6 6 6 7 44 11 8 000 55 55 8
consensus : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
Reference ( family-714 ) : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67230 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67231 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67232 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67233 : TACGAAAG--CCC-AG-A---AG-CT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67234 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-ATA--TCA--AAA--T-TCGAAAT
gi|67235 : TACGAAAG--CCCCAG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--TCAAAA-AT---CCA--AAA--T-TCGAAA
gi|67236 : TACGAAAG--CCC-AG-A---AGGCTGCA-T-TCGACA-TTC-TAAATT--C--AAA-AT---C----AAA--T-TCGAAA
gi|67237 : TACGAAAG--CC--AG-A---AG-CT-CA-T-TC-ACA-TTC-TAAATT--C--AAAGAT---CCA--AAA--T-TCGAAA
gi|67238 : TACGAAAG--CCC-AGCA---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-TC---TCA--AAA--T-TCGAAAT
gi|67239 : TACGAAAC--TCC-AG-A---AGGCT-CA-T-TCGACA-TTC-GAAATT--C--AAA-AT---TCG--AAA--T-CCAAGAT
gi|67240 : TAAGAAAA--CCT-AT-A---AGGTT-CA-T-TCGACA-TTC-CAAATT--C--ACA-AT---ATA--AAA--TGGCGAAGT
gi|67241 : TACGAAAT--CCC-AG-A---AGGCT-CA-T-TCGAGA-TTC-AGAATC--C--GAA-AT---CTA--AGA--T-TCGAGAT
gi|67242 : TACGAAAC--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--A
gi|67243 : TACAAAAG--CCC-AG-TTCTAGGCT-CA-T-TTAACA-TTC-GAAATA--C--AAA-AT---CCG--AGA--T-TCGAAAT
gi|67244 : TACGGAAG--CCC-AG-A---AGGCT-CA-T-TCGAAA-TTC-AAAACT--C------AT---TCG--AAA--T-TCAAA
gi|67245 : TACGAAAGAGCCC-A--A---AGGCT--A-T-TCGAC---TC-TAA-TT--C--AAA-AT---CCA--AAAACT-TCGAAAT
gi|67246 : TACACAAT--TCC-AA-A---AAGCT-CA-T-TCCAAA-TTC-CAAATT--C--AAA-AT---CCG--AGA--T-TCGGAAT
gi|67247 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-
gi|67248 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCAACA-T
gi|67249 : ACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTCTTAAATTTCC--AAA-AT---CCA--AAA--T-TCGAA
gi|67250 : ACGAAAG--CC--AG-A---AGGCT-CAAT-TCGACA-TTC-TAAATT--CA-AAA-AT---CCA--AAA--T-TCGAAAT
gi|67251 : ACGAAAG--GCC-AG-A---AGGCT-CA-T-TCGACA-TTC-AAAATT--C--AAA-AT---CTG--AAA--T-ACGAAAT
gi|67252 : CGTAAG--CCC-AG-A---AGGCT-CA-TATCGACATTTC-TAAA-T--C--AAA-ATCACCCAACAAA--T-TCGGAA
gi|67253 : CGAA-----CC-AG-A-----GCT-CA-T-TCGACA--TC-TAAATT--C---AA-AT---CCA--AA-----TCGAAAT
gi|67254 : GAAAG--CCC-AG-A---AGGCT-AA-T-TCGACA-TTC-TAGATT--C--CAA-AT---CCA--AAC--T-TCGGAA
Alignments
lowQualScore : 22 1 1 222 1 1 1 1 1 22 44 1 555 22 22 1
lowQualScore : .. . . ... . . . . . .. .. . ... .. .. .
lowQualScore : 22 6 6 888 6 6 6 6 7 44 11 8 000 55 55 8
consensus : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
Reference ( family-714 ) : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67230 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67231 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67232 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67233 : TACGAAAG--CCC-AG-A---AG-CT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67234 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-ATA--TCA--AAA--T-TCGAAAT
gi|67235 : TACGAAAG--CCCCAG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--TCAAAA-AT---CCA--AAA--T-TCGAAA
gi|67236 : TACGAAAG--CCC-AG-A---AGGCTGCA-T-TCGACA-TTC-TAAATT--C--AAA-AT---C----AAA--T-TCGAAA
gi|67237 : TACGAAAG--CC--AG-A---AG-CT-CA-T-TC-ACA-TTC-TAAATT--C--AAAGAT---CCA--AAA--T-TCGAAA
gi|67238 : TACGAAAG--CCC-AGCA---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-TC---TCA--AAA--T-TCGAAAT
gi|67239 : TACGAAAC--TCC-AG-A---AGGCT-CA-T-TCGACA-TTC-GAAATT--C--AAA-AT---TCG--AAA--T-CCAAGAT
gi|67240 : TAAGAAAA--CCT-AT-A---AGGTT-CA-T-TCGACA-TTC-CAAATT--C--ACA-AT---ATA--AAA--TGGCGAAGT
gi|67241 : TACGAAAT--CCC-AG-A---AGGCT-CA-T-TCGAGA-TTC-AGAATC--C--GAA-AT---CTA--AGA--T-TCGAGAT
gi|67242 : TACGAAAC--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--A
gi|67243 : TACAAAAG--CCC-AG-TTCTAGGCT-CA-T-TTAACA-TTC-GAAATA--C--AAA-AT---CCG--AGA--T-TCGAAAT
gi|67244 : TACGGAAG--CCC-AG-A---AGGCT-CA-T-TCGAAA-TTC-AAAACT--C------AT---TCG--AAA--T-TCAAA
gi|67245 : TACGAAAGAGCCC-A--A---AGGCT--A-T-TCGAC---TC-TAA-TT--C--AAA-AT---CCA--AAAACT-TCGAAAT
gi|67246 : TACACAAT--TCC-AA-A---AAGCT-CA-T-TCCAAA-TTC-CAAATT--C--AAA-AT---CCG--AGA--T-TCGGAAT
gi|67247 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-
gi|67248 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCAACA-T
gi|67249 : ACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTCTTAAATTTCC--AAA-AT---CCA--AAA--T-TCGAA
gi|67250 : ACGAAAG--CC--AG-A---AGGCT-CAAT-TCGACA-TTC-TAAATT--CA-AAA-AT---CCA--AAA--T-TCGAAAT
gi|67251 : ACGAAAG--GCC-AG-A---AGGCT-CA-T-TCGACA-TTC-AAAATT--C--AAA-AT---CTG--AAA--T-ACGAAAT
gi|67252 : CGTAAG--CCC-AG-A---AGGCT-CA-TATCGACATTTC-TAAA-T--C--AAA-ATCACCCAACAAA--T-TCGGAA
gi|67253 : CGAA-----CC-AG-A-----GCT-CA-T-TCGACA--TC-TAAATT--C---AA-AT---CCA--AA-----TCGAAAT
gi|67254 : GAAAG--CCC-AG-A---AGGCT-AA-T-TCGACA-TTC-TAGATT--C--CAA-AT---CCA--AAC--T-TCGGAA
blockSeqs : AG C C TCT G A A T T TC CA G CAC AC AC G
blockSeqs : . . . . . . . . . . A . A . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
finalCons : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
Alignments
lowQualScore : 22 1 1 222 1 1 1 1 1 22 44 1 555 22 22 1
lowQualScore : .. . . ... . . . . . .. .. . ... .. .. .
lowQualScore : 22 6 6 888 6 6 6 6 7 44 11 8 000 55 55 8
consensus : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
Reference ( family-714 ) : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67230 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67231 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67232 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67233 : TACGAAAG--CCC-AG-A---AG-CT-CA-T-TCGACA-TTC-TAAATT--C--AAA-AT---CCA--AAA--T-TCGAAAT
gi|67234 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-ATA--TCA--AAA--T-TCGAAAT
gi|67235 : TACGAAAG--CCCCAG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--TCAAAA-AT---CCA--AAA--T-TCGAAA
gi|67236 : TACGAAAG--CCC-AG-A---AGGCTGCA-T-TCGACA-TTC-TAAATT--C--AAA-AT---C----AAA--T-TCGAAA
gi|67237 : TACGAAAG--CC--AG-A---AG-CT-CA-T-TC-ACA-TTC-TAAATT--C--AAAGAT---CCA--AAA--T-TCGAAA
gi|67238 : TACGAAAG--CCC-AGCA---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--AAA-TC---TCA--AAA--T-TCGAAAT
gi|67239 : TACGAAAC--TCC-AG-A---AGGCT-CA-T-TCGACA-TTC-GAAATT--C--AAA-AT---TCG--AAA--T-CCAAGAT
gi|67240 : TAAGAAAA--CCT-AT-A---AGGTT-CA-T-TCGACA-TTC-CAAATT--C--ACA-AT---ATA--AAA--TGGCGAAGT
gi|67241 : TACGAAAT--CCC-AG-A---AGGCT-CA-T-TCGAGA-TTC-AGAATC--C--GAA-AT---CTA--AGA--T-TCGAGAT
gi|67242 : TACGAAAC--CCC-AG-A---AGGCT-CA-T-TCGACA-TTC-TAAATT--C--A
gi|67243 : TACAAAAG--CCC-AG-TTCTAGGCT-CA-T-TTAACA-TTC-GAAATA--C--AAA-AT---CCG--AGA--T-TCGAAAT
gi|67244 : TACGGAAG--CCC-AG-A---AGGCT-CA-T-TCGAAA-TTC-AAAACT--C------AT---TCG--AAA--T-TCAAA
gi|67245 : TACGAAAGAGCCC-A--A---AGGCT--A-T-TCGAC---TC-TAA-TT--C--AAA-AT---CCA--AAAACT-TCGAAAT
gi|67246 : TACACAAT--TCC-AA-A---AAGCT-CA-T-TCCAAA-TTC-CAAATT--C--AAA-AT---CCG--AGA--T-TCGGAAT
gi|67247 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-
gi|67248 : TACGAAAG--CCC-AG-A---AGGCT-CA-T-TCAACA-T
gi|67249 : ACGAAAG--CCC-AG-A---AGGCT-CA-T-TCGACA-TTCTTAAATTTCC--AAA-AT---CCA--AAA--T-TCGAA
gi|67250 : ACGAAAG--CC--AG-A---AGGCT-CAAT-TCGACA-TTC-TAAATT--CA-AAA-AT---CCA--AAA--T-TCGAAAT
gi|67251 : ACGAAAG--GCC-AG-A---AGGCT-CA-T-TCGACA-TTC-AAAATT--C--AAA-AT---CTG--AAA--T-ACGAAAT
gi|67252 : CGTAAG--CCC-AG-A---AGGCT-CA-TATCGACATTTC-TAAA-T--C--AAA-ATCACCCAACAAA--T-TCGGAA
gi|67253 : CGAA-----CC-AG-A-----GCT-CA-T-TCGACA--TC-TAAATT--C---AA-AT---CCA--AA-----TCGAAAT
gi|67254 : GAAAG--CCC-AG-A---AGGCT-AA-T-TCGACA-TTC-TAGATT--C--CAA-AT---CCA--AAC--T-TCGGAA