lowQualScore : 7777777777777777777777777
lowQualScore : 1 1 1 1 222 1 1 1 222 1 44 1 1 4 1 1 1 9999999999999999999999999
lowQualScore : . . . . ... . . . ... . .. . . . . . . .........................
lowQualScore : 7 7 7 6 666 5 5 5 666 5 11 5 5 4 5 5 5 3333333333333333333333333
consensus : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGCTTTA---N--GGATG-GTTAAAATTT-TGTACAA
Reference ( gi|117148 ) : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGCTTCA---A--AAATATGTTAAA--TC-TGTACAA
gi|117147 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAG
gi|117145 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaaacac
gi|117131 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaaacac
gi|117149 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaaacacctcgaatgtatttacattaccggatgttaaaattttgtacaaaatggatgc
gi|117132 : CAGT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcgaaaaaacacttc
gi|117134 : CAAT-CGCAACT-TCT-TGGGCC-TTTCCGGCAGagctcggaaaaacacctcgaatgtatt
gi|117138 : CACT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaaacacctcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117140 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCagctcggaaaaacacctcgaatgtattt
gi|117137 : CAAT-CGCAACT-TCT-CGGGCC-GTTCCGGCAGcagagctcggaaaaacacctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117141 : CAAT-CACAAAT-TCT-CGGGCC-TTTCCGGCAGaactcggaaaaacacctcgaatgtctttactttaccggatgttaaaattttgtacaaaatggatgc
gi|117153 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaaacacctcgaatgtattt
gi|117154 : CAAT-CGTAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaa
gi|117139 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGagctcggaaaa
gi|117146 : CAAT-CGCAACT-TCT-CGGGCC-TTTCCGGCAGcagctcggaaaaaaccctcgaatgtattacattacgatgtaaaattttgtacaaaatggatgc
gi|117151 : CAAT-CGCAACT-TCT-CGGGCC-TTTCC-GCAGagctccgaaaa
gi|117136 : CAAT-CGCAACT-TCT-CGGAGC-TTTCCGGCAGagctcggaaaaaaacctc
gi|117133 : CAAT-CG-AACT-TCT-CGG-CC-TTTCCGACAGagcctcggaaaaacacctcgaagtatt
gi|117143 : CAAT-CGCAACT-TCT-CGGACCTTTTCCGGCAGagctcggaaaaacacctcgatgtatttacattacggatgttaaaattttgtacaaaatggatgc
gi|117135 : CAAT-CGCAACTGTCT-CGGGCC-TTTCCGG-AG-----------CG-AG-CT-----------CGG-AAA-AACACCT-CGA-A--TGTA-TTTACATTA---C--GGATG-GTTAAAATTT-TGTACAAaactcggaaaaaaaacacgctcgaaatgtatt
gi|117150 : CAAT-CGCAACT-TCT-CGGGCC-TTTCC-GCAGaatggatgc
gi|117144 : CACT-CGCAACT-TCT-CGGGTT-ATTCCGGCA---------------AG-CT-C----G-----GG-AAA-GGTGCCT-CGA-A--TGTA-ATATTTTCACCGG--AAGTAAG--AAA--TT-TGTACAAagctggaa
gi|117142 : CAATTCG-AACT-TCT-C-GGCT-TTTGCCGC--TG--------CAG-AG-CT--------C--CGG-AAA-AACACCT-CGA-A--TGTG-ATTTCTTTT---ACCGGATG-GTTAAAATTCTTGTACAAaatggatgc
gi|117152 : CAAT-TGCAACT-TCT-CGGACC-TCGCCTGCAAGGTCTatgggatgc
gi|117155 : AAT-CGCAACT-TCTGCGGGCC-TTTCCGGCAgggaaacacctcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117143 : -TTTCGAGC-GTGTTTTTTTTCCG-AG-TT-CT---G-C--CGG-AAAAGGT-CCG-AGA-AGTTGCG-ATTGttaaggctcggaaaacac
gi|117149 : AGTGTTTTT---TCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGtgtatt
gi|117147 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGtc
gi|117145 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTG
gi|117131 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTG
gi|117132 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ACTGctcgaatgtatttacattaccggatgttaaaattttgtacaaaatggatgc
gi|117134 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCA-AGA-AGTTGCG-ATTGctcgaatgtatt
gi|117138 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-AGTGctcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117140 : GTGTTTTT---CCG-AG-CT-CT---GGC--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGctcgaatgtattt
gi|117137 : GTGTTTTT---CCG-AG-TT-CT---G-C--CGG-AAC-GGC-CCG-AGA-AGTTGCG-ATTGctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117141 : GTGTTTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-ATTTGTG-ATTGctcgaatgtctttactttaccggatgttaaaattttgtacaaaatggatgc
gi|117151 : GTTTTTTT---CCG-AG-CT-CT---G-C---GG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGctcgaatgtattt
gi|117136 : GTGTTTTT---CCG-AGGCT-CT---G-C--CGG-AAA-GCT-CCG-AGA-AGTTGCG-ATTGctc
gi|117133 : GTGTTTTT---CCG-AG-CT-CT---G-T--CGG-AAA-GG--CCG-AGA-AGTT-CG-ATTGctcgaagtatt
gi|117135 : GTGTTTTT---CCG-AG-CT-C----G-CTCCGG-AAA-GGC-CCG-AGACAGTTGCG-ATTGctcgatgtatttacattacggatgttaaaattttgtacaaaatggatgc
gi|117155 : GTGTTTT----CCG-AG-CC-TTAATG-C--CGG-AAA-GGC-CCGCAGA-AGTTGCG-ATTctcgaatgtatttacattacggatggttaaaattttgtacaaaatggatgc
gi|117142 : GTGTTTTT---CCGGAG-CT-CT---G-CAGCGGCAAA-AG--CCG-AGA-AGTT-CGAATTG
gi|117152 : GTGTTTCC---CAG-AC-CT--T---G-C--AGG-CGA-GGT-CCG-AGA-AGTTGCA-ATTGctcgaatgtgatttcttttaccggatggttaaaattcttgtacaaatgggatgc
gi|117139 : TTTTT---CCG-AG-CTGCT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGctcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117154 : TTTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTACG-ATTGaccctcgaatgtattacattacgatgtaaaattttgtacaaaatggatgc
gi|117146 : TTTT---CGG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTG
gi|117144 : TTTC---CCG-AG-CT--T---G-C--CGG-AAT-AAC-CCG-AGA-AGTTGCG-AGTG
gi|117153 : TTT---CCG-AG-CT-CT---G-C--CGG-AAA-GGC-CCG-AGA-AGTTGCG-ATTGggtgcctcgaatgtaatattttcaccggaagtaagaaatttgtacaaaatggatgc
gi|117150 : TT---CC--AG-CT-CT---G-C---GG-AAA-GGC-CCG-AGA-AGTTGCG-ATTG
Alignments
lowQualScore : 222 11
lowQualScore : 5 2 5 2 0 222 1 2222 1 1 8 1 2 4 5 111 77 5
lowQualScore : . . . . . ... . .... . . . . . . . ... .. .
lowQualScore : 0 5 0 5 8 444 4 7777 4 4 3 4 1 0 0 000 88 0
consensus : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTGCNTT-ACC-GGATG-GTTAAAATT-TTGTACAA
Reference ( family-708 ) : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTGCTTT-A-N-GGATG-GTTAAAATT-TTGTACAA
gi|117131 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTG
gi|117131 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCA-------------GAG-CT--------CGGAAA-AACACCT-CGAA--TGTATTTACATT-ACC-GGAT--GTTAAAATT-TTGTACAActcgaatgtatttacattaccggatgttaaaattttgtacaaaatggatgc
gi|117132 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGACTGaatggatgc
gi|117133 : GTGTTTTT---CCGAG-CTCT---G-TCGGAAA-GG--CCG-AGAAGTT-CGATTGctcgaatgtatt
gi|117133 : CAAT-CG-AACT-TCTCGG-CCTTTCCGACA-------------GAG-CT--------CGGAAA-AACACCT-CGA---TGTATTTACATT-A-C-GGAT--GTTAAAATT-TTGTACAActcgatgtatttacattacggatgttaaaattttgtacaaaatggatgc
gi|117134 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCA-AGAAGTTGCGATTGaatggatgc
gi|117135 : CAAT-CGCAACTGTCTCGGGCCTTTCCGG-AG-----------CGAG-CTC--------GGAAA-AACACCT-CGAA--TGTATTTACATT-A-C-GGATG-GTTAAAATT-TTGTACAActcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117136 : GTGTTTTT---CCGAGGCTCT---G-CCGGAAA-GCT-CCG-AGAAGTTGCGATTGaatggatgc
gi|117137 : GTGTTTTT---CCGAG-TTCT---G-CCGGAAC-GGC-CCG-AGAAGTTGCGATTGctcgaagtatt
gi|117137 : CAAT-CGCAACT-TCTCGGGCCGTTCCGGCA-------------GAA-CT--------CGGAAA-AACACCT-CGAA--TGTCTTTACTTT-ACC-GGAT--GTTAAAATT-TTGTACAActcgaatgtctttactttaccggatgttaaaattttgtacaaaatggatgc
gi|117138 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGAGTGaatggatgc
gi|117139 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGC------------AG-CTC----G---GAAAA-AAC-CCT-CGAA--TGT-ATTACATT-A-C--GATG---TAAAATT-TTGTACAActcgaatgtattt
gi|117140 : GTGTTTTT---CCGAG-CTCT---GGCCGGAAA-GGC-CCG-AGAAGTTGCGATTGaatggatgc
gi|117141 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAATTTGTGATTGctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117142 : CAATTCG-AACT-TCTCGG-CTTTTGCCGC--TG--------CAGAG-CTC-------CGGAAA-AACACCT-CGAA--TGTGATTTCTTTTA-CCGGATG-GTTAAAATTCTTGTACAActcgaatgtattt
gi|117143 : TTTCGAGC-GTGTTTTTTTTCCGAG-TTCT---G-CCGGAAAAGGT-CCG-AGAAGTTGCGATTGatgggatgc
gi|117144 : TTTC---CCGAG-CT-T---G-CCGGAAT-AAC-CCG-AGAAGTTGCGAGTGtgtatt
gi|117144 : CACT-CGCAACT-TCTCGGGTTATTCCGGCA--------------AG-CTC----G---GGAAA-GGTGCCT-CGAA--TGTAATATTTTC-ACC-GGA-A-GTAAGAAAT-TTGTACAAggtgcctcgaatgtaatattttcaccggaagtaagaaatttgtacaaaatggatgc
gi|117145 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTGaatggatgc
gi|117146 : TTTT---CGGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTG
gi|117147 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTG
gi|117148 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTGCTTC-A-A-AAATATGTTAAA--T-CTGTACAA
gi|117149 : AGTGTTTTT---TCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTG
gi|117150 : TT---CC-AG-CTCT---G-C-GGAAA-GGC-CCG-AGAAGTTGCGATTGtc
gi|117151 : GTTTTTTT---CCGAG-CTCT---G-C-GGAAA-GGC-CCG-AGAAGTTGCGATTG
gi|117152 : GTGTTTCC---CAGAC-CT-T---G-CAGGCGA-GGT-CCG-AGAAGTTGCAATTGctc
gi|117153 : TTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTGCGATTGctcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117154 : TTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAAGTTACGATTG
gi|117155 : GTGTTTT----CCGAG-CCTTAATG-CCGGAAA-GGC-CCGCAGAAGTTGCGATT
Alignments
lowQualScore : 222
lowQualScore : 4 1 4 2 2 0 3333 1 3333 11 1 8 1 1 222 22 2 1 8 88 000 2 4
lowQualScore : . . . . . . .... . .... .. . . . . ... .. . . . .. ... . .
lowQualScore : 4 1 4 9 0 4 2222 4 1111 88 4 6 4 4 555 00 5 0 9 66 888 0 4
consensus : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-ACCGGATG--GTTAAAATT-TTGTACAA
Reference ( family-708 ) : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-ACCGGATG--GTTAAAATT-TTGTACAA
gi|117131 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCA-------------GAG-CT--------CGGAAA-AACAC-CT-CG---A--A--TGTATTTACATT-ACCGGAT---GTTAAAATT-TTGTACAA
gi|117132 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGACTGaatggatgc
gi|117133 : GTGTTTTT---CCGAG-CTCT---G-TCGGAAA-GG--C-CG-AG---A--AGTT-CGATTGctcgaatgtatt
gi|117133 : CAAT-CG-AACT-TCTCGG-CCTTTCCGACA-------------GAG-CT--------CGGAAA-AACAC-CT-CG---A-----TGTATTTACATT-A-CGGAT---GTTAAAATT-TTGTACAActcgatgtatttacattacggatgttaaaattttgtacaaaatggatgc
gi|117134 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CA-AG---A--AGTTGCGATTGaatggatgc
gi|117135 : CAAT-CGCAACTGTCTCGGGCCTTTCCGG-AG-----------CGAG-CTC--------GGAAA-AACAC-CT-CG---A--A--TGTATTTACATT-AC-GGATG--GTTAAAATT-TTGTACAActcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117136 : GTGTTTTT---CCGAGGCTCT---G-CCGGAAA-GCT-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117137 : CAAT-CGCAACT-TCTCGGGCCGTTCCGGCA-------------GAA-CT--------CGGAAA-AACAC-CT-CG---A--A--TGTCTTTACTTT-ACCGGAT---GTTAAAATT-TTGTACAActcgaagtatt
gi|117138 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGAGTGaatggatgc
gi|117139 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGC------------AG-CTC----G---GAAAA-AAC-C-CT-CG---A--A--TGT-ATTACATT-AC--GATG----TAAAATT-TTGTACAActcgaatgtattt
gi|117140 : GTGTTTTT---CCGAG-CTCT---GGCCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117141 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--ATTTGTGATTGctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117142 : CAATTCG-AACT-TCTCGG-CTTTTGCCGC--TG--------CAGAG-CTC-------CGGAAA-AACAC-CT-CG---A--A--TGTGATTTCTTTTACCGGATG--GTTAAAATTCTTGTACAActcgaatgtattt
gi|117143 : TTTCGAGC-GTGTTTTTTTTCCGAG-TTCT---G-CCGGAAAAGGT-C-CG-AG---A--AGTTGCGATTGatgggatgc
gi|117144 : TTTC---CCGAG-CT-T---G-CCGGAAT-AAC-C-CG-AG---A--AGTTGCGAGTGtgtatt
gi|117144 : CACT-CGCAACT-TCTCGGGTTATTCCGGCA--------------AG-CTC----G---GGAAA-GGTGC-CT-CG---A--A--TGTAATATTTTC-ACCGGA-A--GTAAGAAAT-TTGTACAAggtgcctcgaatgtaatattttcaccggaagtaagaaatttgtacaaaatggatgc
gi|117145 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117146 : TTTT---CGGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117147 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117148 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCTTC-A-AAAATAT-GTTAAA--T-CTGTACAA
gi|117149 : AGTGTTTTT---TCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117150 : TT---CC-AG-CTCT---G-C-GGAAA-GGC-C-CG-AG---A--AGTTGCGATTGtc
gi|117151 : GTTTTTTT---CCGAG-CTCT---G-C-GGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117152 : GTGTTTCC---CAGAC-CT-T---G-CAGGCGA-GGT-C-CG-AG---A--AGTTGCAATTGctc
gi|117152 : CAAT-TGCAACT-TCTCGGACCTCGCCTGCA--------------AG-GTCT---G---GGAAA-CAC-CTCG-AGTGTACTAGT----ATTTTGTTCATTGCATGTAG-TAAAA-T-TTGTACAActcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117153 : TTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGattggatgc
gi|117154 : TTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTACGATTG
gi|117155 : GTGTTTT----CCGAG-CCTTAATG-CCGGAAA-GGC-C-CGCAG---A--AGTTGCGATT
Alignments
lowQualScore : 222
lowQualScore : 4 1 4 2 2 0 3333 1 3333 11 1 8 1 1 222 22 2 1 8 88 000 2 4
lowQualScore : . . . . . . .... . .... .. . . . . ... .. . . . .. ... . .
lowQualScore : 4 1 4 9 0 4 2222 4 1111 88 4 6 4 4 555 00 5 0 9 66 888 0 4
consensus : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-ACCGGATG--GTTAAAATT-TTGTACAA
Reference ( family-708 ) : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-ACCGGATG--GTTAAAATT-TTGTACAA
gi|117131 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCA-------------GAG-CT--------CGGAAA-AACAC-CT-CG---A--A--TGTATTTACATT-ACCGGAT---GTTAAAATT-TTGTACAA
gi|117132 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGACTGaatggatgc
gi|117133 : GTGTTTTT---CCGAG-CTCT---G-TCGGAAA-GG--C-CG-AG---A--AGTT-CGATTGctcgaatgtatt
gi|117133 : CAAT-CG-AACT-TCTCGG-CCTTTCCGACA-------------GAG-CT--------CGGAAA-AACAC-CT-CG---A-----TGTATTTACATT-A-CGGAT---GTTAAAATT-TTGTACAActcgatgtatttacattacggatgttaaaattttgtacaaaatggatgc
gi|117134 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CA-AG---A--AGTTGCGATTGaatggatgc
gi|117135 : CAAT-CGCAACTGTCTCGGGCCTTTCCGG-AG-----------CGAG-CTC--------GGAAA-AACAC-CT-CG---A--A--TGTATTTACATT-AC-GGATG--GTTAAAATT-TTGTACAActcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117136 : GTGTTTTT---CCGAGGCTCT---G-CCGGAAA-GCT-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117137 : CAAT-CGCAACT-TCTCGGGCCGTTCCGGCA-------------GAA-CT--------CGGAAA-AACAC-CT-CG---A--A--TGTCTTTACTTT-ACCGGAT---GTTAAAATT-TTGTACAActcgaagtatt
gi|117138 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGAGTGaatggatgc
gi|117139 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGC------------AG-CTC----G---GAAAA-AAC-C-CT-CG---A--A--TGT-ATTACATT-AC--GATG----TAAAATT-TTGTACAActcgaatgtattt
gi|117140 : GTGTTTTT---CCGAG-CTCT---GGCCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117141 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--ATTTGTGATTGctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117142 : CAATTCG-AACT-TCTCGG-CTTTTGCCGC--TG--------CAGAG-CTC-------CGGAAA-AACAC-CT-CG---A--A--TGTGATTTCTTTTACCGGATG--GTTAAAATTCTTGTACAActcgaatgtattt
gi|117143 : TTTCGAGC-GTGTTTTTTTTCCGAG-TTCT---G-CCGGAAAAGGT-C-CG-AG---A--AGTTGCGATTGatgggatgc
gi|117144 : TTTC---CCGAG-CT-T---G-CCGGAAT-AAC-C-CG-AG---A--AGTTGCGAGTGtgtatt
gi|117144 : CACT-CGCAACT-TCTCGGGTTATTCCGGCA--------------AG-CTC----G---GGAAA-GGTGC-CT-CG---A--A--TGTAATATTTTC-ACCGGA-A--GTAAGAAAT-TTGTACAAggtgcctcgaatgtaatattttcaccggaagtaagaaatttgtacaaaatggatgc
gi|117145 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGaatggatgc
gi|117146 : TTTT---CGGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117147 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117148 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCTTC-A-AAAATAT-GTTAAA--T-CTGTACAA
gi|117149 : AGTGTTTTT---TCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117150 : TT---CC-AG-CTCT---G-C-GGAAA-GGC-C-CG-AG---A--AGTTGCGATTGtc
gi|117151 : GTTTTTTT---CCGAG-CTCT---G-C-GGAAA-GGC-C-CG-AG---A--AGTTGCGATTG
gi|117152 : GTGTTTCC---CAGAC-CT-T---G-CAGGCGA-GGT-C-CG-AG---A--AGTTGCAATTGctc
gi|117152 : CAAT-TGCAACT-TCTCGGACCTCGCCTGCA--------------AG-GTCT---G---GGAAA-CAC-CTCG-AGTGTACTAGT----ATTTTGTTCATTGCATGTAG-TAAAA-T-TTGTACAActcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117153 : TTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGattggatgc
gi|117154 : TTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTACGATTG
gi|117155 : GTGTTTT----CCGAG-CCTTAATG-CCGGAAA-GGC-C-CGCAG---A--AGTTGCGATT
blockSeqs : T C G G G TTTT G TAAT GC A A T C TGT CT G A T CC GTA T C
blockSeqs : . C . G G T . T C . A . . . . G A C CC AT T .
blockSeqs : . C . G G T . T T . A . . . . G T . CC G T .
blockSeqs : . C . G G T . T C . A . . . . G A . TT G T .
blockSeqs : . C . G G T . T C . G . . . . G T . C G T .
blockSeqs : . C . A G T . T C . . . . . . G T . C A A .
blockSeqs : . . . . G T . T C . . . . . . T T . C . . .
blockSeqs : . . . . G T . T C . . . . . . G G . A . . .
blockSeqs : G C . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G T . T C . . . . . . G
blockSeqs : G C . T C . . . . . . G
blockSeqs : . T . T C . . . . . . G
blockSeqs : . T . T C . . . . . . G
blockSeqs : . . . T C . . . . . . G
blockSeqs : . . . T . . . . . . . G
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : T*** T*** C* C* G**
originalCons : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-ACCGGATG--GTTAAAATT-TTGTACAA
finalCons : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---GC-CGGAAA-GGC-C-CG-AG---A--AGTTGCGATTGCNTT-AC-GGATG--GTTAAAATT-TTGTACAA
Alignments
lowQualScore : 1 1 22222222
lowQualScore : 4 1 4 1 55 0 3333 1 55555 1 1 0 1 8888888888 1 1 4 3 4 22222222 5
lowQualScore : . . . . .. . .... . ..... . . . . .......... . . . . . ........ .
lowQualScore : 4 1 4 1 22 4 2222 4 22222 4 4 0 4 2222222222 5 0 4 3 4 22222222 0
consensus : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-CNTT-A-C-GGA-----TG-GTTAAAATT-TTGTACAA
Reference ( family-708 ) : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-CNTT-A-C-GGA-----TG-GTTAAAATT-TTGTACAA
gi|117131 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCA-------------GAG-CT--------CGGAAA-AACACCT-CGAA-----------TGTATTTA-CATT-ACC-GGA-----T--GTTAAAATT-TTGTACAA
gi|117132 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGACTG-aatggatgc
gi|117133 : CAAT-CG-AACT-TCTCGG-CCTTTCCGACA-------------GAG-CT--------CGGAAA-AACACCT-CGA------------TGTATTTA-CATT-A-C-GGA-----T--GTTAAAATT-TTGTACAActcgaatgtatt
gi|117134 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCA-AGAA---------GTTGCGATTG-aatggatgc
gi|117135 : CAAT-CGCAACTGTCTCGGGCCTTTCCGG-AG-----------CGAG-CTC--------GGAAA-AACACCT-CGAA-----------TGTATTTA-CATT-A-C-GGA-----TG-GTTAAAATT-TTGTACAActcgaatgtatttgggttgaaagtgtcatgggcgaaaatgtgggtaaaatg
gi|117136 : GTGTTTTT---CCGAGGCTCT---G-CCGGAAA-GCT-CCG-AGAA---------GTTGCGATTG-aatggatgc
gi|117137 : GTGTTTTT---CCGAG-TTCT---G-CCGGAAC-GGC-CCG-AGAA---------GTTGCGATTG-ctcgaagtatt
gi|117137 : CAAT-CGCAACT-TCTCGGGCCGTTCCGGCA-------------GAA-CT--------CGGAAA-AACACCT-CGAA-----------TGTCTTTA-CTTT-ACC-GGA-----T--GTTAAAATT-TTGTACAActcgaatgtctttactttaccggatgttaaaattttgtacaaaatggatgc
gi|117138 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGAGTG-aatggatgc
gi|117139 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGC------------AG-CTC----G---GAAAA-AAC-CCT-CGAA-----------TGT-ATTA-CATT-A-C--GA-----TG---TAAAATT-TTGTACAActcgaatgtattt
gi|117140 : GTGTTTTT---CCGAG-CTCT---GGCCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-aatggatgc
gi|117140 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGC------------CAGAG-CT--------CGGAAA-AACACCT-CGAATGTATTTGGGTTGAAAGTGTCATT-G-C-GGAAATTGTG-GGTAAAATctcgaatgtatttgggttgaaagtgtcattgcggaaattgtgggtaaaatg
gi|117141 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------TTTGTGATTG-g
gi|117142 : CAATTCG-AACT-TCTCGG-CTTTTGCCGC--TG--------CAGAG-CTC-------CGGAAA-AACACCT-CGAA-----------TGTGATTT-CTTTTA-CCGGA-----TG-GTTAAAATTCTTGTACAActcgaatgtattt
gi|117143 : TTTCGAGC-GTGTTTTTTTTCCGAG-TTCT---G-CCGGAAAAGGT-CCG-AGAA---------GTTGCGATTG-atgggatgc
gi|117144 : TTTC---CCGAG-CT-T---G-CCGGAAT-AAC-CCG-AGAA---------GTTGCGAGTG-tgtatt
gi|117144 : CACT-CGCAACT-TCTCGGGTTATTCCGGCA--------------AG-CTC----G---GGAAA-GGTGCCT-CGAA-----------TGTAATAT-TTTC-ACC-GGA------A-GTAAGAAAT-TTGTACAAggtgcctcgaatgtaatattttcaccggaagtaagaaatttgtacaaaatggatgc
gi|117145 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-aatggatgc
gi|117146 : TTTT---CGGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-
gi|117147 : GTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-
gi|117148 : CAAT-CGCAACT-TCTCGGGCCTTTCCGGCAGTGTTTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-CTTC-A-A-AAA-----TATGTTAAA--T-CTGTACAA
gi|117149 : AGTGTTTTT---TCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-
gi|117150 : TT---CC-AG-CTCT---G-C-GGAAA-GGC-CCG-AGAA---------GTTGCGATTG-tc
gi|117151 : GTTTTTTT---CCGAG-CTCT---G-C-GGAAA-GGC-CCG-AGAA---------GTTGCGATTG-
gi|117152 : GTGTTTCC---CAGAC-CT-T---G-CAGGCGA-GGT-CCG-AGAA---------GTTGCAATTG-ctc
gi|117153 : TTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTGCGATTG-ctcgagtgtactagtattttgttcattgcatgtagtaaaatttgtacaaattggatgc
gi|117154 : TTTT---CCGAG-CTCT---G-CCGGAAA-GGC-CCG-AGAA---------GTTACGATTG-
gi|117155 : GTGTTTT----CCGAG-CCTTAATG-CCGGAAA-GGC-CCGCAGAA---------GTTGCGATT