lowQualScore : 1111 1
lowQualScore : 3 555 1 2 33 5555 22 444 2222 4 4 2 2 2 2 2 2 3 22 3 1 1 77777 1 1 1 222 1 1 1 1 22 1 1 777 22 7 1 1 1 1 333 22 1 1 1 1 1
lowQualScore : . ... . . .. .... .. ... .... . . . . . . . . . .. . . . ..... . . . ... . . . . .. . . ... .. . . . . . ... .. . . . . .
lowQualScore : 1 000 1 7 77 3333 44 444 6666 4 4 2 2 2 1 1 1 5 44 5 7 7 55555 7 7 7 999 7 7 7 7 66 7 7 222 44 2 7 7 7 7 000 44 8 8 8 8 9
consensus : TTGA-AA---TGTGAGAAT-A--TAA----AAATT---T--A-TTTCTTTC-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-T-G-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
Reference ( gi|5900 ) : TTGA-AA---TGTGAGAAT-A--TAA----AAATT---T--C-TTTCTTTC-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CACA-T-G-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5901 : TTGA-AA---TGTGAGAAT-A--TAA----GAAAT---G--A-TTTCTGTC-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--TAAA-T-G-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5902 : TTGA-AA---TGTGAGAAT-A--TAA----GAATT---T--A-TTTCTTTC-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GCA-GTTT-G---A-C-ACC-CT-AA-ACTA--CCTG-CA-AG---TTT--CAAA-T-G-AA-TC---ATCACAA--G-CAT-A-A-AGA-AAAAA
gi|5906 : TTTA-AA---TGTGAGAAT-A--TAA----AAATT---T--C-TTTCTTTC-A-C-A-CC-TGCCAAACAA-ATG-TT-ATAAAATTCGAA-G--T-T-G-AG-----CT-GGA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-T-G-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5903 : TTGA-AA---TGTGAAAAT-A--TAA----AAAAT---T--A-TTTCTTTC-A-C-A-CC-TGAGTACCAA-ACG-TT-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CATG-CA-AG---TTT--CAAA-T-G-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5904 : TTGA-AA---TGTGAGAAT-A--TAA----AAATT---T--C-TTTC---A-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAAAC--TCT-G-AT-----CTTGTA-GTTT-G---A-C-GCT-CTAAA-ACTAC-CCTG-AA-AG---TTT--CAAA-T-G-TA-TC---CTCACAA--G-CTT-A-A-AGA-AAAAA
gi|5905 : TTGA-AA---TGTGAAAAT-G--TAA----AAAAT---T--A-TTTCTTTC-A-C-A-CTGCGCCCACCAA-ACA-TA-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTAAGTTT-G---AAC-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-T-G-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5907 : TTGA-AA---TGTGAGAAT-A--TAT----AAAAT---T--C-TTTCTTTC-A-C-A-CC-TGCCCACCAA-AAG-TT-A--AAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTG-A-ACTA--CCTGCCA-AG---TTT--CA-A-T-G--A-TT---CTCACAA--G-CAG-A-A-AGA-AAAAAA
gi|5908 : TTGA-AA---CATAAGAAT-A--TAA----AA-TT---T--A-TTTATTTC-A-C-A-CC-TGCCTATCAA-ACA-TT-ACCAAACCCGAA-C--T-T-G-AT-----CT-ATA-GTTT-G---A-C-ACT-CTGAA-AATAC-ACTG-CA-AA---TTT--CAAA-C-G-AA-TC---AACGCAA--T-CAT-A-A-AGA-AAAAA
gi|5909 : TTGATGA---TGTGA-AATGA--TAG----AAAT-------A-TTTCTTTC-AAC-AACC-TGCC-ACCAAGACG-TTGATGAAATTCAAA-C--T-TTG-ATT----CT-GTA-GTTT-G---A-CGACT-CTGAA-ACTAC-C-TG-CA-AG---TTTTCCAAA-T-G-AT-TC---CTCACAA--G-CAT-ACA-AGA-AAAAAA
gi|5910 : TTGA-A----T-TGAAAAT-AAATAA----AATTT---T--A-TTTCTTTC-AAC-A-CC-TGCCCACC-A-ACGTTT-ATGAAATTCAAA-C--T-T-GCAT-----CT-GTA-GTTT-G---A-C-A-T-CTAAA-ACT-T-CCTG-CA-AGTCCTTC--CAAA-T-G-AT-TC---CTC-CAA--G-CATAA-A-AGATAAAAAA
gi|5911 : TTAA-AA---CGCAACAAT-A--TAA----AA-TT---TGGC-TTTTTTTCCA-C-A-CC-TGTCTATCAA-ACA-TT-ACGAAATTCGAC-C--T-T-G-AT-----CT-GTT-GTTT-T---C-C-A-T-TGGAA-ACGAT---------AGT--TTT--CAAA-T-G-AA-TT---CTCGCAA--G-CAG-A-A-
gi|5912 : TTAA-AAAATTGTAAGAAT-A--TAA----AA--T---T--CATTTCCTTC-A-C-A-CC---------AA-ACG-TT-ACGAAATTCGAA-C--T-T-A-AT-----CC-GTA-GTTT-G---A-C-AC
gi|5913 : -AA---TATTAAAAG-A--TAATATTAAATT---T--A-CTTCGTTC-A-C-A-CC-TGCCTATCAA-ACG-TT-ACCAAATTAGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-C-G-AA-TT---CTCGCAC--G-CAT-T-A-AGA-AAA
gi|5915 : ---TATGAAAAT-G--TAA----AAAAA---T--A-TTTCTTTC-A-C-A-C--TGCCCACCAA-ACG-TT-ATGAAAT-CAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-C-TG-CA-AG---TTT--CAAA-T-G-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5916 : T-A--TAA----AAATT---A--A-TTTTCGCA-A-T-A-TC-TGCCCATCAA-ACG-TT-GCAAAAATCGGA-C--T-T-G-AC-----AG-GTA-ATTT-T---T-C-ACT-CTGAA-TCTAC-ACTG-CA-AG---TTT--CAAA-T-G-AA-TCCGACTTACAA--G-CAT-A-G-CGA-GAAAA
gi|5917 : AA----AAATTGGAT--T-GTCTTTTC-A-CCA-CC-TGCCCACCAA-ACG-TT--TG-AATTTGAA-TAATAT-G-ATGCATGTT-ATT-GTTT-GATCA-C-ACCACTAAAGATTACACCTG-CA-AGTA-TTT--CAAA-T-GCAA-TA---ATCACAACTGTCAT-A-A-AGA-ATAAA
gi|5914 : TTCTTTC-A-C-A-CC---------AA-ACG-TT-ATGAA-TTCGAA-T--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CATAG-----T--CA-A-TGG-AA-TC---CTCACAA--G-CA--A-A-AGG-AAA
gi|5918 : atgtaagatatctaactataTTTTTCGA-C-A-CC-TGTTCATGAA-ACA-CG-ACCAAATTCGAAAC--T-T-G-GT-----CT-GTG-GTTTTG---C-C-AGT-CTGAA-ACTAC-ACTG-CA-AT---TTT--CAAATT-G-AATTC---CTTGCAA--G-CAT-A-A-GGA-AA
gi|5919 : aaaatcagaCCACAAA-ACG-TT-TTGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ATT-TTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-T-G-AT-TC---CTTACAA--G-CAT-A-A-AGA-AAAAAA
gi|5920 : AATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACC-TTGAA-ACTAT-CCTG-CA-AG---CTT--CAAA-T-G-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5921 : TTCGAA-C--T-T-A-AT-----AG-GTG-GTTT-G---T-C-ATT-CTCAA-TCTAC-ACTG-CA-AG---TTT--CAAA-T-A-CA-TC---CTTACAA--G-CAT-A-G-CGG-GAAAA
gi|5922 : TCGAT-C--T-T-G-AT-----CT-GTA-GTTT-G---C-T-ACT-TTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-T-G-AA-TC---CTCGCAA--A-CAT-A-ATAGG-AAA
gi|5923 : -C--T-T-G-AT-----CT-GTA-GATT-G---A-C-ACT-CTGAA-ACTAC-ACTG-TA-AG---TTT--CAAA-T-G-AT-TC---CTCACAA--
gi|5924 : -G-ATG----CT-GTA-GTTT-G---C-T-ACC-CTGGA-ACTAC-ACTC-CA-AG---TTT--CAAA-T-G-AA-TC---CTCCGAA--G-CAT-A-G-AGG-AAAAA
Alignments
lowQualScore : 2 444 2 2 33 2 4444 1 66666 2 2 2 2 6 2 2 2 2 2 2 2 3 22 3 1 1 77777 1 1 1 222 1 1 1 1 22 1 1 666 22 1 1 1 222 22 1 1 1 1 1
lowQualScore : . ... . . .. . .... . ..... . . . . . . . . . . . . . .. . . . ..... . . . ... . . . . .. . . ... .. . . . ... .. . . . . .
lowQualScore : 9 444 5 4 22 2 7777 9 11111 2 1 1 1 3 1 1 1 0 0 0 9 3 33 3 6 6 22222 6 6 6 888 6 6 7 7 11 7 7 999 33 7 7 7 999 33 7 7 7 7 8
consensus : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
Reference ( family-707 ) : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5900 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CACA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5901 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAAATG-A---T-T-TCTGT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--TAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5902 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GCA-GTTT-G---A-C-ACC-CT-AA-ACTA--CCTG-CA-AG---TTT--CAAA-TG-AA-TC---ATCACAA--G-CAT-A-A-AGA-AAAAA
gi|5903 : TTGA-AA---TGTGAAA-AT-A--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CC-TGAGTACCAA-ACG-TT-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CATG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5904 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT----------CTTT-C-AAC-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAAAC--TCT-G-AT-----CTTGTA-GTTT-G---A-C-GCT-CTAAA-ACTAC-CCTG-AA-AG---TTT--CAAA-TG-TA-TC---CTCACAA--G-CTT-A-A-AGA-AAAAA
gi|5905 : TTGA-AA---TGTGAAA-AT-G--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CTGCGCCCACCAA-ACA-TA-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTAAGTTT-G---AAC-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5906 : TTTA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCAAACAA-ATG-TT-ATAAAATTCGAA-G--T-T-G-AG-----CT-GGA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5907 : TTGA-AA---TGTGAGA-AT-A--TATA----AAATTC-----T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-AAG-TT-A--AAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTG-A-ACTA--CCTGCCA-AG---TTT--C-AA-TG--A-TT---CTCACAA--G-CAG-A-A-AGA-AAAAAA
gi|5908 : TTGA-AA---CATAAGA-AT-A--TA-A----AA-TTT-A---T-T-TATTT-C-A-C-A-CC-TGCCTATCAA-ACA-TT-ACCAAACCCGAA-C--T-T-G-AT-----CT-ATA-GTTT-G---A-C-ACT-CTGAA-AATAC-ACTG-CA-AA---TTT--CAAA-CG-AA-TC---AACGCAA--T-CAT-A-A-AGA-AAAAA
gi|5909 : TTGATGA---TGTGA-A-ATGA--TA-G----AAAT---A---T-T-TCTTT-C-AAC-AACC-TGCC-ACCAAGACG-TTGATGAAATTCAAA-C--T-TTG-ATT----CT-GTA-GTTT-G---A-CGACT-CTGAA-ACTAC-C-TG-CA-AG---TTTTCCAAA-TG-AT-TC---CTCACAA--G-CAT-ACA-AGA-AAAAAA
gi|5910 : TTGA-A----T-TGAAA-AT-AAATA-A----AATTTT-A---T-T-TCTTT-C-AAC-A-CC-TGCCCACC-A-ACGTTT-ATGAAATTCAAA-C--T-T-GCAT-----CT-GTA-GTTT-G---A-C-A-T-CTAAA-ACT-T-CCTG-CA-AGTCCTTC--CAAA-TG-AT-TC---CTC-CAA--G-CATAA-A-AGATAAAAAA
gi|5911 : TTAA-AA---CGCAACA-AT-A--TA-A----AA-TTT-GGCTT-T-TTTTC-C-A-C-A-CC-TGTCTATCAA-ACA-TT-ACGAAATTCGAC-C--T-T-G-AT-----CT-GTT-GTTT-T---C-C-A-T-TGGAA-ACGAT---------AGT--TTT--CAAA-TG-AA-TT---CTCGCAA--G-CAG-A-A-
gi|5912 : TTAA-AAAATTGTAAGA-AT-A--TA-A----AA-TTC-A---T-T-TCCTT-C-A-C-A-CC---------AA-ACG-TT-ACGAAATTCGAA-C--T-T-A-AT-----CC-GTA-GTTT-G---A-C-AC
gi|5913 : -AA---TATTAAA-AG-A--TA-ATATTAAATTT-A---C-T-TCGTT-C-A-C-A-CC-TGCCTATCAA-ACG-TT-ACCAAATTAGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-CG-AA-TT---CTCGCAC--G-CAT-T-A-AGA-AAA
gi|5914 : A---TGTAAGATAT-C--TA-A--------CT-A---TAT-TCTTT-C-A-C-A-CC---------AA-ACG-TT-ATGAA-TTCGAA-T--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CATAG-----T--CAAT-GG-AA-TC---CTCACAA--G-CA--A-A-AGG-AAA
gi|5915 : ---TATGAAA-AT-G--TA-A----AAAAAT-A---T-T-TCTTT-C-A-C-A-C--TGCCCACCAA-ACG-TT-ATGAAAT-CAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-C-TG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5916 : T-A--TA-A----AAATTA-A---T-T-TTCGC-A-A-T-A-TC-TGCCCATCAA-ACG-TT-GCAAAAATCGGA-C--T-T-G-AC-----AG-GTA-ATTT-T---T-C-ACT-CTGAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TCCGACTTACAA--G-CAT-A-G-CGA-GAAAA
gi|5917 : A-A----AAATTGGA---T-TGTCTTTTC-A-CCA-CC-TGCCCACCAA-ACG-TT--TG-AATTTGAA-TAATAT-G-ATGCATGTT-ATT-GTTT-GATCA-C-ACCACTAAAGATTACACCTG-CA-AGTA-TTT--CAAA-TGCAA-TA---ATCACAACTGTCAT-A-A-AGA-ATAAA
gi|5918 : -TTTTT-CGA-C-A-CC-TGTTCATGAA-ACA-CG-ACCAAATTCGAAAC--T-T-G-GT-----CT-GTG-GTTTTG---C-C-AGT-CTGAA-ACTAC-ACTG-CA-AT---TTT--CAAATTG-AATTC---CTTGCAA--G-CAT-A-A-GGA-AA
gi|5919 : aaaatcagaCCACAAA-ACG-TT-TTGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ATT-TTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTTACAA--G-CAT-A-A-AGA-AAAAAA
gi|5920 : AATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACC-TTGAA-ACTAT-CCTG-CA-AG---CTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5921 : TTCGAA-C--T-T-A-AT-----AG-GTG-GTTT-G---T-C-ATT-CTCAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TA-CA-TC---CTTACAA--G-CAT-A-G-CGG-GAAAA
gi|5922 : TCGAT-C--T-T-G-AT-----CT-GTA-GTTT-G---C-T-ACT-TTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCGCAA--A-CAT-A-ATAGG-AAA
gi|5923 : -C--T-T-G-AT-----CT-GTA-GATT-G---A-C-ACT-CTGAA-ACTAC-ACTG-TA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--
gi|5924 : -G-ATG----CT-GTA-GTTT-G---C-T-ACC-CTGGA-ACTAC-ACTC-CA-AG---TTT--CAAA-TG-AA-TC---CTCCGAA--G-CAT-A-G-AGG-AAAAA
Alignments
lowQualScore : 2 444 2 2 33 2 4444 1 66666 2 2 2 2 6 2 2 2 2 2 2 2 3 22 3 1 1 77777 1 1 1 222 1 1 1 1 22 1 1 666 22 1 1 1 222 22 1 1 1 1 1
lowQualScore : . ... . . .. . .... . ..... . . . . . . . . . . . . . .. . . . ..... . . . ... . . . . .. . . ... .. . . . ... .. . . . . .
lowQualScore : 9 444 5 4 22 2 7777 9 11111 2 1 1 1 3 1 1 1 0 0 0 9 3 33 3 6 6 22222 6 6 6 888 6 6 7 7 11 7 7 999 33 7 7 7 999 33 7 7 7 7 8
consensus : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
Reference ( family-707 ) : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5900 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CACA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5901 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAAATG-A---T-T-TCTGT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--TAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5902 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GCA-GTTT-G---A-C-ACC-CT-AA-ACTA--CCTG-CA-AG---TTT--CAAA-TG-AA-TC---ATCACAA--G-CAT-A-A-AGA-AAAAA
gi|5903 : TTGA-AA---TGTGAAA-AT-A--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CC-TGAGTACCAA-ACG-TT-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CATG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5904 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT----------CTTT-C-AAC-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAAAC--TCT-G-AT-----CTTGTA-GTTT-G---A-C-GCT-CTAAA-ACTAC-CCTG-AA-AG---TTT--CAAA-TG-TA-TC---CTCACAA--G-CTT-A-A-AGA-AAAAA
gi|5905 : TTGA-AA---TGTGAAA-AT-G--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CTGCGCCCACCAA-ACA-TA-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTAAGTTT-G---AAC-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5906 : TTTA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCAAACAA-ATG-TT-ATAAAATTCGAA-G--T-T-G-AG-----CT-GGA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5907 : TTGA-AA---TGTGAGA-AT-A--TATA----AAATTC-----T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-AAG-TT-A--AAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTG-A-ACTA--CCTGCCA-AG---TTT--C-AA-TG--A-TT---CTCACAA--G-CAG-A-A-AGA-AAAAAA
gi|5908 : TTGA-AA---CATAAGA-AT-A--TA-A----AA-TTT-A---T-T-TATTT-C-A-C-A-CC-TGCCTATCAA-ACA-TT-ACCAAACCCGAA-C--T-T-G-AT-----CT-ATA-GTTT-G---A-C-ACT-CTGAA-AATAC-ACTG-CA-AA---TTT--CAAA-CG-AA-TC---AACGCAA--T-CAT-A-A-AGA-AAAAA
gi|5909 : TTGATGA---TGTGA-A-ATGA--TA-G----AAAT---A---T-T-TCTTT-C-AAC-AACC-TGCC-ACCAAGACG-TTGATGAAATTCAAA-C--T-TTG-ATT----CT-GTA-GTTT-G---A-CGACT-CTGAA-ACTAC-C-TG-CA-AG---TTTTCCAAA-TG-AT-TC---CTCACAA--G-CAT-ACA-AGA-AAAAAA
gi|5910 : TTGA-A----T-TGAAA-AT-AAATA-A----AATTTT-A---T-T-TCTTT-C-AAC-A-CC-TGCCCACC-A-ACGTTT-ATGAAATTCAAA-C--T-T-GCAT-----CT-GTA-GTTT-G---A-C-A-T-CTAAA-ACT-T-CCTG-CA-AGTCCTTC--CAAA-TG-AT-TC---CTC-CAA--G-CATAA-A-AGATAAAAAA
gi|5911 : TTAA-AA---CGCAACA-AT-A--TA-A----AA-TTT-GGCTT-T-TTTTC-C-A-C-A-CC-TGTCTATCAA-ACA-TT-ACGAAATTCGAC-C--T-T-G-AT-----CT-GTT-GTTT-T---C-C-A-T-TGGAA-ACGAT---------AGT--TTT--CAAA-TG-AA-TT---CTCGCAA--G-CAG-A-A-
gi|5912 : TTAA-AAAATTGTAAGA-AT-A--TA-A----AA-TTC-A---T-T-TCCTT-C-A-C-A-CC---------AA-ACG-TT-ACGAAATTCGAA-C--T-T-A-AT-----CC-GTA-GTTT-G---A-C-AC
gi|5913 : -AA---TATTAAA-AG-A--TA-ATATTAAATTT-A---C-T-TCGTT-C-A-C-A-CC-TGCCTATCAA-ACG-TT-ACCAAATTAGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-CG-AA-TT---CTCGCAC--G-CAT-T-A-AGA-AAA
gi|5914 : A---TGTAAGATAT-C--TA-A--------CT-A---TAT-TCTTT-C-A-C-A-CC---------AA-ACG-TT-ATGAA-TTCGAA-T--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CATAG-----T--CAAT-GG-AA-TC---CTCACAA--G-CA--A-A-AGG-AAA
gi|5915 : ---TATGAAA-AT-G--TA-A----AAAAAT-A---T-T-TCTTT-C-A-C-A-C--TGCCCACCAA-ACG-TT-ATGAAAT-CAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-C-TG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5916 : T-A--TA-A----AAATTA-A---T-T-TTCGC-A-A-T-A-TC-TGCCCATCAA-ACG-TT-GCAAAAATCGGA-C--T-T-G-AC-----AG-GTA-ATTT-T---T-C-ACT-CTGAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TCCGACTTACAA--G-CAT-A-G-CGA-GAAAA
gi|5917 : A-A----AAATTGGA---T-TGTCTTTTC-A-CCA-CC-TGCCCACCAA-ACG-TT--TG-AATTTGAA-TAATAT-G-ATGCATGTT-ATT-GTTT-GATCA-C-ACCACTAAAGATTACACCTG-CA-AGTA-TTT--CAAA-TGCAA-TA---ATCACAACTGTCAT-A-A-AGA-ATAAA
gi|5918 : -TTTTT-CGA-C-A-CC-TGTTCATGAA-ACA-CG-ACCAAATTCGAAAC--T-T-G-GT-----CT-GTG-GTTTTG---C-C-AGT-CTGAA-ACTAC-ACTG-CA-AT---TTT--CAAATTG-AATTC---CTTGCAA--G-CAT-A-A-GGA-AA
gi|5919 : aaaatcagaCCACAAA-ACG-TT-TTGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ATT-TTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTTACAA--G-CAT-A-A-AGA-AAAAAA
gi|5920 : AATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACC-TTGAA-ACTAT-CCTG-CA-AG---CTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5921 : TTCGAA-C--T-T-A-AT-----AG-GTG-GTTT-G---T-C-ATT-CTCAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TA-CA-TC---CTTACAA--G-CAT-A-G-CGG-GAAAA
gi|5922 : TCGAT-C--T-T-G-AT-----CT-GTA-GTTT-G---C-T-ACT-TTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCGCAA--A-CAT-A-ATAGG-AAA
gi|5923 : -C--T-T-G-AT-----CT-GTA-GATT-G---A-C-ACT-CTGAA-ACTAC-ACTG-TA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--
gi|5924 : -G-ATG----CT-GTA-GTTT-G---C-T-ACC-CTGGA-ACTAC-ACTC-CA-AG---TTT--CAAA-TG-AA-TC---CTCCGAA--G-CAT-A-G-AGG-AAAAA
blockSeqs : T AAT T G AA T TATT A GGCT A G T G A C A G G T G T A AA C T C GCATG T A T ATC A G A G AC C T TCC TC T C T CGA CT T A C T T
blockSeqs : . . . . . . . A GA . . . . A . . . . . . T A . A . . T . . . . . . . . C . . TA . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . A . . . . . . T . . . . . G . . . . . . . . C . . T . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . . . . . . . . C . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T A . . . . . . . . . . . T . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . C . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . C . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . C . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . C . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
finalCons : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
Alignments
lowQualScore : 2 444 2 2 33 2 4444 1 66666 2 2 2 2 6 2 2 2 2 2 2 2 3 22 3 1 1 77777 1 1 1 222 1 1 1 1 22 1 1 666 22 1 1 1 222 22 1 1 1 1 1
lowQualScore : . ... . . .. . .... . ..... . . . . . . . . . . . . . .. . . . ..... . . . ... . . . . .. . . ... .. . . . ... .. . . . . .
lowQualScore : 9 444 5 4 22 2 7777 9 11111 2 1 1 1 3 1 1 1 0 0 0 9 3 33 3 6 6 22222 6 6 6 888 6 6 7 7 11 7 7 999 33 7 7 7 999 33 7 7 7 7 8
consensus : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
Reference ( family-707 ) : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ACGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5900 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CACA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5901 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAAATG-A---T-T-TCTGT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--TAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5902 : TTGA-AA---TGTGAGA-AT-A--TA-A----GAATTT-A---T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAA-C--T-T-G-AT-----CT-GCA-GTTT-G---A-C-ACC-CT-AA-ACTA--CCTG-CA-AG---TTT--CAAA-TG-AA-TC---ATCACAA--G-CAT-A-A-AGA-AAAAA
gi|5903 : TTGA-AA---TGTGAAA-AT-A--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CC-TGAGTACCAA-ACG-TT-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CATG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5904 : TTGA-AA---TGTGAGA-AT-A--TA-A----AAATTT----------CTTT-C-AAC-A-CC-TGCCCACCAA-ACG-TT-ATGAAATTCGAAAC--TCT-G-AT-----CTTGTA-GTTT-G---A-C-GCT-CTAAA-ACTAC-CCTG-AA-AG---TTT--CAAA-TG-TA-TC---CTCACAA--G-CTT-A-A-AGA-AAAAA
gi|5905 : TTGA-AA---TGTGAAA-AT-G--TA-A----AAAATT-A---T-T-TCTTT-C-A-C-A-CTGCGCCCACCAA-ACA-TA-ATGAAATTCAAA-C--T-T-G-AT-----CT-GTAAGTTT-G---AAC-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5906 : TTTA-AA---TGTGAGA-AT-A--TA-A----AAATTT-C---T-T-TCTTT-C-A-C-A-CC-TGCCAAACAA-ATG-TT-ATAAAATTCGAA-G--T-T-G-AG-----CT-GGA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5907 : TTGA-AA---TGTGAGA-AT-A--TATA----AAATTC-----T-T-TCTTT-C-A-C-A-CC-TGCCCACCAA-AAG-TT-A--AAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTG-A-ACTA--CCTGCCA-AG---TTT--C-AA-TG--A-TT---CTCACAA--G-CAG-A-A-AGA-AAAAAA
gi|5908 : TTGA-AA---CATAAGA-AT-A--TA-A----AA-TTT-A---T-T-TATTT-C-A-C-A-CC-TGCCTATCAA-ACA-TT-ACCAAACCCGAA-C--T-T-G-AT-----CT-ATA-GTTT-G---A-C-ACT-CTGAA-AATAC-ACTG-CA-AA---TTT--CAAA-CG-AA-TC---AACGCAA--T-CAT-A-A-AGA-AAAAA
gi|5909 : TTGATGA---TGTGA-A-ATGA--TA-G----AAAT---A---T-T-TCTTT-C-AAC-AACC-TGCC-ACCAAGACG-TTGATGAAATTCAAA-C--T-TTG-ATT----CT-GTA-GTTT-G---A-CGACT-CTGAA-ACTAC-C-TG-CA-AG---TTTTCCAAA-TG-AT-TC---CTCACAA--G-CAT-ACA-AGA-AAAAAA
gi|5910 : TTGA-A----T-TGAAA-AT-AAATA-A----AATTTT-A---T-T-TCTTT-C-AAC-A-CC-TGCCCACC-A-ACGTTT-ATGAAATTCAAA-C--T-T-GCAT-----CT-GTA-GTTT-G---A-C-A-T-CTAAA-ACT-T-CCTG-CA-AGTCCTTC--CAAA-TG-AT-TC---CTC-CAA--G-CATAA-A-AGATAAAAAA
gi|5911 : TTAA-AA---CGCAACA-AT-A--TA-A----AA-TTT-GGCTT-T-TTTTC-C-A-C-A-CC-TGTCTATCAA-ACA-TT-ACGAAATTCGAC-C--T-T-G-AT-----CT-GTT-GTTT-T---C-C-A-T-TGGAA-ACGAT---------AGT--TTT--CAAA-TG-AA-TT---CTCGCAA--G-CAG-A-A-
gi|5912 : TTAA-AAAATTGTAAGA-AT-A--TA-A----AA-TTC-A---T-T-TCCTT-C-A-C-A-CC---------AA-ACG-TT-ACGAAATTCGAA-C--T-T-A-AT-----CC-GTA-GTTT-G---A-C-AC
gi|5913 : -AA---TATTAAA-AG-A--TA-ATATTAAATTT-A---C-T-TCGTT-C-A-C-A-CC-TGCCTATCAA-ACG-TT-ACCAAATTAGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-CG-AA-TT---CTCGCAC--G-CAT-T-A-AGA-AAA
gi|5914 : A---TGTAAGATAT-C--TA-A--------CT-A---TAT-TCTTT-C-A-C-A-CC---------AA-ACG-TT-ATGAA-TTCGAA-T--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-CCTG-CATAG-----T--CAAT-GG-AA-TC---CTCACAA--G-CA--A-A-AGG-AAA
gi|5915 : ---TATGAAA-AT-G--TA-A----AAAAAT-A---T-T-TCTTT-C-A-C-A-C--TGCCCACCAA-ACG-TT-ATGAAAT-CAAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACT-CTGAA-ACTAC-C-TG-CA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--G-CAT-A-A-AGA-AAAAA
gi|5916 : T-A--TA-A----AAATTA-A---T-T-TTCGC-A-A-T-A-TC-TGCCCATCAA-ACG-TT-GCAAAAATCGGA-C--T-T-G-AC-----AG-GTA-ATTT-T---T-C-ACT-CTGAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TCCGACTTACAA--G-CAT-A-G-CGA-GAAAA
gi|5917 : A-A----AAATTGGA---T-TGTCTTTTC-A-CCA-CC-TGCCCACCAA-ACG-TT--TG-AATTTGAA-TAATAT-G-ATGCATGTT-ATT-GTTT-GATCA-C-ACCACTAAAGATTACACCTG-CA-AGTA-TTT--CAAA-TGCAA-TA---ATCACAACTGTCAT-A-A-AGA-ATAAA
gi|5918 : -TTTTT-CGA-C-A-CC-TGTTCATGAA-ACA-CG-ACCAAATTCGAAAC--T-T-G-GT-----CT-GTG-GTTTTG---C-C-AGT-CTGAA-ACTAC-ACTG-CA-AT---TTT--CAAATTG-AATTC---CTTGCAA--G-CAT-A-A-GGA-AA
gi|5919 : aaaatcagaCCACAAA-ACG-TT-TTGAAATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ATT-TTGAA-ACTAC-CCTG-CA-AG---TTT--CAAA-TG-AT-TC---CTTACAA--G-CAT-A-A-AGA-AAAAAA
gi|5920 : AATTCGAA-C--T-T-G-AT-----CT-GTA-GTTT-G---A-C-ACC-TTGAA-ACTAT-CCTG-CA-AG---CTT--CAAA-TG-AA-TC---CTCACAA--G-CAT-A-A-AGA-AAAAAA
gi|5921 : TTCGAA-C--T-T-A-AT-----AG-GTG-GTTT-G---T-C-ATT-CTCAA-TCTAC-ACTG-CA-AG---TTT--CAAA-TA-CA-TC---CTTACAA--G-CAT-A-G-CGG-GAAAA
gi|5922 : TCGAT-C--T-T-G-AT-----CT-GTA-GTTT-G---C-T-ACT-TTGAA-ACTAC-ACTG-CA-AG---TTT--CAAA-TG-AA-TC---CTCGCAA--A-CAT-A-ATAGG-AAA
gi|5923 : -C--T-T-G-AT-----CT-GTA-GATT-G---A-C-ACT-CTGAA-ACTAC-ACTG-TA-AG---TTT--CAAA-TG-AT-TC---CTCACAA--
gi|5924 : -G-ATG----CT-GTA-GTTT-G---C-T-ACC-CTGGA-ACTAC-ACTC-CA-AG---TTT--CAAA-TG-AA-TC---CTCCGAA--G-CAT-A-G-AGG-AAAAA