lowQualScore : 11
lowQualScore : 1 99 5 333 1 1 1 11 3 1 1 1 1 1 1 1 55 1 1 55555 1 888 222 1 1 1 1 1 88 22
lowQualScore : . .. . ... . . . .. . . . . . . . . .. . . ..... . ... ... . . . . . .. ..
lowQualScore : 8 33 5 000 7 7 7 11 2 6 6 6 6 6 6 6 66 6 6 22222 7 999 999 7 7 7 7 7 44 44
consensus : ATGTCT-A--T-CA---AT-T-CT-TC-GCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AG-T-GATA-A-G-TCCA-AA--GTCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
Reference ( gi|104592 ) : ATGTCT-A--T-CA---AT-T-CT-TT-GCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AG-T-GATA-A-G-TCCA-AA--ATCCA---AAG-A-TA-T-TC-ACC-AAG--AATATTT
gi|104593 : ATGTCT-A--T-CA---TT-T-CT-TC-ACA-AG-A-TT-TATCCC-G-AA-GAG-AC-AG-T-GATA-A-G-TCCA-AA--TTCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104595 : ATGTCT-A--T-CA---AT-T-TT-T---CA-AG-A-TT-TATCCC-G-AA-GAG-AC-AG-T-GATA-A-G-TCCA-AA--ATCCA---AAG-A-TA-T-AC-ACC-GAG--AATATTT
gi|104594 : ATGTCT-A--T-CA---AT-T-CT-TC-GCA-AG-A-TT-TATCCC-A-AA-GAG-AC-AG-T-GATA-A-G-----------TCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104602 : ATGTCT-A--T-CA---GT-T-CT-TC-GCC-AG-A-TT-TATTCC-G-A--GAG-GC-TG-T-GATA-A-A-TCCA-AA--ATCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104596 : ATGTCT-A--T-CA---AT-T-CT-TC-GCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AA-C-GAT-----------AA--ATCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104599 : ATGTCT-A--T-CA---AT-T-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC----T-GATA-A-G-TCCA-AA---TCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104598 : ATGTCT-A--T-CA---AT-T-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC----T-GATA-A-G-TCCA-AA---TCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104601 : ATGTCT-A--T-CA---AT-T-CT-TC-GCA-AG-A-TT-TATCCT-G-AA-AAG-AC-AG-T-GATA-A---T---------TCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104603 : ATGTCT-A--T-CA---AT-T-CT-TC-GCC-CG-ATTT-TATCCC-G-AA-GAG-GC-TG-T-GATA-A---TCCA-AT--ATCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
gi|104597 : ATGTCT-A--TTCA---AT-T-CT-TC-GCC-AG-A-TT-TATCCC-G-AA-GAGAAC-TG-T-GA-A-A-A-TCC--AA--ATCCA---AAG-A-TA-T-TC-ACC-GAA--AATATTT
gi|104600 : ATGTCT-A--T-CA----T-T-CT-TC-GCC-AG-A-TT-TATCC--G-AA-GAG-AC----T-GATA-A-G-TCCA-AA--ATCCA---AAG-A-TA-T-TC-ACC-
gi|104604 : ATGTCT-AA-T-AA---AT-T-CT-TC-GCA-AG-A-AT-TAACCC-GGAA-GAG-AC-AG-T-GATA-A-G-TCCAGAA--GTCAA---GAT-A-TA-T-TC-ACC-GAA--AATATTTggaga
gi|104606 : ATGTCT-AGAT-AT---AT-T-CT-TC-GCA-AG-A-TT-TAACCC-G-AA-GAT-AC-AG-T-GATA-A-G-TCCA-GA--GTCAA---GAT-A-TA-T-TC-ACC-GAG--AAT-TTT
gi|104605 : ATGTCT-A--TTCA---AT-T-CT-TC-GCC-AGTA-TT-TATCCC-G-AA-GAG-GC-TG-T-GATA-A-ATTCCA-AA--CTCCA---AAGCA-TA-T-TC-A-C-GAG---ATATT
gi|104607 : ATGTCT-A--GATA---AT-T-CT-TC-GCACAG-A-TT-TACACC-G-AA-GAG--C-AG-T-GATA-AGG-TCCA-GA--GTC-----AAG-ATTA-T-TC-ACC-GAG--AATATTT
gi|104609 : ATGTCC-G--T-CG---AT-T-CT-TT-GCA-AG-A-TT-TATTCC-G-AA-GAG-AT-AG-T-G------------------TCTA---AAG-A-TA-T-TT-ACC-TAG--ATTATTT
gi|104612 : ATGTCT----T-CATATGT-T-CT-T----A-AG-A-TTCTATCCC-G-AA--AG-AG-AGAT-GATA-A-G-TCCA-AA--GTCCA---AAG-A-TA-T-TC-ACG-TGG--AATATTT
gi|104608 : ATGTCT-A--T-CA---AT-T-CTGTC-GCAGAG-A-TT-TATCC--G-AA-AGT-AC-AG-TTGATTTG-G-TCCA-AA----TCA---AAG-A-TA-T-TC-ACCGAGG--AATATTT
gi|104610 : ATGTCT-AGAT-AA---AT-TTCT-TC-GCA-AG-A-TT-TA-ACC-G-AA-GAG-AC-AG-T-G--------TCCA-AA--GTC-----AAG-A-TAATATC-ACC-GAG--AATATTT
gi|104611 : ATGTCT-A--T-CA---GT-C-CT-TC-ACA-AG-A-TT-TATCCT-G-AA-GAG-AC-AG-T-GA
gi|104613 : TATCTCA--T-CA---AAAT-CT-TTCGCA-GA-A-TT-TATCCC-G-AAGGAG-AC-AG-T-G---------TCA-AG--ATCCA---AAA-G-TA------AC---AG--AATA
gi|104614 : GTCT-AGAT-CA---AT-T-AT-TC-GCA-AG-A-TT-TATCCC-G-AA-GAG-AC----T--------G-TTCA-AA--GTCAA---GAT-A-TA-T-TC-ACC-GAA--AATATTT
gi|104615 : A---AC-T-TC-TC-GCA-AG-A-TT-TAACCCGG-AA-GAT-ACGAG-T-GATA-G-G-TCCA-GATCATACGGGCGAT-A-TA-T-TCAACC-GAGAAAATATTT
gi|104616 : T-TC-GCC-AG-A-TT-AATCCC-G-AA-G--------------------TCCA-AA--ATCCA---AAG-A-TA-T-TC-ACC-GAG--AA
gi|104617 : -GCA-AG-C-TT-CACTCC-G-AA-TAG-AC-AG-T-GATA-G-G-TCCA-AT--GTCCA---AAG-A-TA-T-TC-ACC-GAG--AATATTT
Alignments
lowQualScore : 1 88 5 222 22 1 1 3 3 1 1 1 1 1 3 1 55 1 55555 1 8 5555555 1 1 1 1 1 1 1 22
lowQualScore : . .. . ... .. . . . . . . . . . . . .. . ..... . . ....... . . . . . . . ..
lowQualScore : 7 99 2 999 33 7 6 2 1 5 5 5 5 5 1 5 00 5 99999 6 2 4444444 7 7 7 7 7 7 7 33
consensus : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
Reference ( family-699 ) : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104592 : ATGTCT-A--T-CA---A--TT-CT-T-TGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-AA-G--AATATTT
gi|104593 : ATGTCT-A--T-CA---T--TT-CT-T-CACA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AATTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104594 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-A-AA-GAG-AC-AGT-GAT-----------AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104595 : ATGTCT-A--T-CA---A--TT-TT-T-C--A-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-AC-ACC-GA-G--AATATTT
gi|104596 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AAC-GAT-----------AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104597 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AG-A-TT-TATCCC-G-AA-GAGAAC-TGT-GA-A-A-A-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104598 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104599 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104600 : ATGTCT-A--T-CA------TT-CT-T-CGCC-AG-A-TT-TATCC--G-AA-GAG-AC---T-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACCGGA-G--
gi|104601 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCT-G-AA-AAG-AC-AGT-GATA-A---T-------TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104602 : ATGTCT-A--T-CA---G--TT-CT-T-CGCC-AG-A-TT-TATTCC-G-A--GAG-GC-TGT-GATA-A-A-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104603 : ATGTCT-A--T-CA---A--TT-CT-T-CGCC-CG-ATTT-TATCCC-G-AA-GAG-GC-TGT-GATA-A---TCCA-ATATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104604 : ATGTCT-AA-T-AA---A--TT-CT-T-CGCA-AG-A-AT-TAACCC-GGAA-GAG-AC-AGT-GATA-A-G-TCCAGAAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104605 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AGTA-TT-TATCCC-G-AA-GAG-GC-TGT-GATA-A-ATTCCA-AACTCCA-------AAGCA-TA-T-TC-A-C-GA-G---ATATT
gi|104606 : ATGTCT-AGAT-AT---A--TT-CT-T-CGCA-AG-A-TT-TAACCC-G-AA-GAT-AC-AGT-GATA-A-G-TCCA-GAGTCAA-------GAT-A-TA-T-TC-ACC-GA-G--AAT-TTT
gi|104607 : ATGTCT-A--GATA---A--TT-CT-T-CGCACAG-A-TT-TACACC-G-AA-GAG--C-AGT-GATA-AGG-TCCA-GAGTC---------AAG-ATTA-T-TC-ACC-GA-G--AATATTT
gi|104608 : ATGTCT-A--T-CA---A--TT-CTGT-CGCAGAG-A-TT-TATCC--G-AA-AGT-AC-AGTTGATTTG-G-TCCA-AA--TCA-------AAG-A-TA-T-TC-ACC-GAGG--AATATTT
gi|104609 : ATGTCC-G--T-CG---A--TT-CT-T-TGCA-AG-A-TT-TATTCC-G-AA-GAG-AT-AGT-----------------GTCTA-------AAG-A-TA-T-TT-ACC-TA-G--ATTATTT
gi|104610 : ATGTCT-AGAT-AA---A--TTTCT-T-CGCA-AG-A-TT-TA-ACC-G-AA-GAG-AC-AGT-G--------TCCA-AAGTC---------AAG-A-TAATATC-ACC-GA-G--AATATTT
gi|104611 : ATGTCT-A--T-CA---G--TC-CT-T-CACA-AG-A-TT-TATCCT-G-AA-GAG-AC-AGT-GA
gi|104612 : ATGTCT----T-CATATG--TT-CT-T----A-AG-A-TTCTATCCC-G-AAAGAG-AG-A-T-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACG-TG-G--AATATTT
gi|104613 : TATCTCA--T-CA---AAATC-TT-T-CGCA-GA-A-TT-TATCCC-G-AAGGAG-AC-AGT-GTCA-A-GATCCA-AA
gi|104614 : GTCT-AGAT-CA---A--TT-AT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC---T--------G-TTCA-AAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTTagtaacagaata
gi|104615 : A---A--CT-TC-T-CGCA-AG-A-TT-TAACCCGG-AA-GAT-ACGAGT-GATA-G-G-TCCA-GA--TCATACGGGCGAT-A-TA-T-TCAACC-GA-GAAAATATTT
gi|104616 : T-T-CGCC-AG-A-TT-AATCCC-G-AA-G-------------------TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AA
gi|104617 : GCA-AG-C-TT-CACTCC-G-AA-TAG-AC-AGT-GATA-G-G-TCCA-ATGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
Alignments
lowQualScore : 1 88 5 222 22 1 1 3 3 1 1 1 1 1 3 1 55 1 55555 1 8 5555555 1 1 1 1 1 1 1 22
lowQualScore : . .. . ... .. . . . . . . . . . . . .. . ..... . . ....... . . . . . . . ..
lowQualScore : 7 99 2 999 33 7 6 2 1 5 5 5 5 5 1 5 00 5 99999 6 2 4444444 7 7 7 7 7 7 7 33
consensus : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
Reference ( family-699 ) : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104592 : ATGTCT-A--T-CA---A--TT-CT-T-TGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-AA-G--AATATTT
gi|104593 : ATGTCT-A--T-CA---T--TT-CT-T-CACA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AATTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104594 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-A-AA-GAG-AC-AGT-GAT-----------AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104595 : ATGTCT-A--T-CA---A--TT-TT-T-C--A-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-AC-ACC-GA-G--AATATTT
gi|104596 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AAC-GAT-----------AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104597 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AG-A-TT-TATCCC-G-AA-GAGAAC-TGT-GA-A-A-A-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104598 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104599 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104600 : ATGTCT-A--T-CA------TT-CT-T-CGCC-AG-A-TT-TATCC--G-AA-GAG-AC---T-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACCGGA-G--
gi|104601 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCT-G-AA-AAG-AC-AGT-GATA-A---T-------TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104602 : ATGTCT-A--T-CA---G--TT-CT-T-CGCC-AG-A-TT-TATTCC-G-A--GAG-GC-TGT-GATA-A-A-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104603 : ATGTCT-A--T-CA---A--TT-CT-T-CGCC-CG-ATTT-TATCCC-G-AA-GAG-GC-TGT-GATA-A---TCCA-ATATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104604 : ATGTCT-AA-T-AA---A--TT-CT-T-CGCA-AG-A-AT-TAACCC-GGAA-GAG-AC-AGT-GATA-A-G-TCCAGAAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104605 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AGTA-TT-TATCCC-G-AA-GAG-GC-TGT-GATA-A-ATTCCA-AACTCCA-------AAGCA-TA-T-TC-A-C-GA-G---ATATT
gi|104606 : ATGTCT-AGAT-AT---A--TT-CT-T-CGCA-AG-A-TT-TAACCC-G-AA-GAT-AC-AGT-GATA-A-G-TCCA-GAGTCAA-------GAT-A-TA-T-TC-ACC-GA-G--AAT-TTT
gi|104607 : ATGTCT-A--GATA---A--TT-CT-T-CGCACAG-A-TT-TACACC-G-AA-GAG--C-AGT-GATA-AGG-TCCA-GAGTC---------AAG-ATTA-T-TC-ACC-GA-G--AATATTT
gi|104608 : ATGTCT-A--T-CA---A--TT-CTGT-CGCAGAG-A-TT-TATCC--G-AA-AGT-AC-AGTTGATTTG-G-TCCA-AA--TCA-------AAG-A-TA-T-TC-ACC-GAGG--AATATTT
gi|104609 : ATGTCC-G--T-CG---A--TT-CT-T-TGCA-AG-A-TT-TATTCC-G-AA-GAG-AT-AGT-----------------GTCTA-------AAG-A-TA-T-TT-ACC-TA-G--ATTATTT
gi|104610 : ATGTCT-AGAT-AA---A--TTTCT-T-CGCA-AG-A-TT-TA-ACC-G-AA-GAG-AC-AGT-G--------TCCA-AAGTC---------AAG-A-TAATATC-ACC-GA-G--AATATTT
gi|104611 : ATGTCT-A--T-CA---G--TC-CT-T-CACA-AG-A-TT-TATCCT-G-AA-GAG-AC-AGT-GA
gi|104612 : ATGTCT----T-CATATG--TT-CT-T----A-AG-A-TTCTATCCC-G-AAAGAG-AG-A-T-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACG-TG-G--AATATTT
gi|104613 : TATCTCA--T-CA---AAATC-TT-T-CGCA-GA-A-TT-TATCCC-G-AAGGAG-AC-AGT-GTCA-A-GATCCA-AA
gi|104614 : GTCT-AGAT-CA---A--TT-AT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC---T--------G-TTCA-AAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTTagtaacagaata
gi|104615 : A---A--CT-TC-T-CGCA-AG-A-TT-TAACCCGG-AA-GAT-ACGAGT-GATA-G-G-TCCA-GA--TCATACGGGCGAT-A-TA-T-TCAACC-GA-GAAAATATTT
gi|104616 : T-T-CGCC-AG-A-TT-AATCCC-G-AA-G-------------------TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AA
gi|104617 : GCA-AG-C-TT-CACTCC-G-AA-TAG-AC-AGT-GATA-G-G-TCCA-ATGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
blockSeqs : C GA T TAT AA T G T C T T C G G A A GA T AAT G T TACGGGC C T A A A G G AA
blockSeqs : . GA T . . . . T G . . . . . G . A . AGG . G . . . . . . . . .
blockSeqs : . GA A . . . . . . . . . . . . . A . TGG . A . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . A . AGA . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AG . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . AG . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AA . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . AG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . AG . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . AA . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . AG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . GG . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . GG . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . A . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
finalCons : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
Alignments
lowQualScore : 1 88 5 222 22 1 1 3 3 1 1 1 1 1 3 1 55 1 55555 1 8 5555555 1 1 1 1 1 1 1 22
lowQualScore : . .. . ... .. . . . . . . . . . . . .. . ..... . . ....... . . . . . . . ..
lowQualScore : 7 99 2 999 33 7 6 2 1 5 5 5 5 5 1 5 00 5 99999 6 2 4444444 7 7 7 7 7 7 7 33
consensus : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
Reference ( family-699 ) : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104592 : ATGTCT-A--T-CA---A--TT-CT-T-TGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-AA-G--AATATTT
gi|104593 : ATGTCT-A--T-CA---T--TT-CT-T-CACA-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AATTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104594 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-A-AA-GAG-AC-AGT-GAT-----------AAGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104595 : ATGTCT-A--T-CA---A--TT-TT-T-C--A-AG-A-TT-TATCCC-G-AA-GAG-AC-AGT-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-AC-ACC-GA-G--AATATTT
gi|104596 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC-AAC-GAT-----------AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104597 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AG-A-TT-TATCCC-G-AA-GAGAAC-TGT-GA-A-A-A-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104598 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104599 : ATGTCT-A--T-CA---A--TT-CT-TTCGCC-AG-A-TT-TATCCC-G-AA-GA--AC---T-GATA-A-G-TCCA-AA-TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104600 : ATGTCT-A--T-CA------TT-CT-T-CGCC-AG-A-TT-TATCC--G-AA-GAG-AC---T-GATA-A-G-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACCGGA-G--
gi|104601 : ATGTCT-A--T-CA---A--TT-CT-T-CGCA-AG-A-TT-TATCCT-G-AA-AAG-AC-AGT-GATA-A---T-------TCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104602 : ATGTCT-A--T-CA---G--TT-CT-T-CGCC-AG-A-TT-TATTCC-G-A--GAG-GC-TGT-GATA-A-A-TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104603 : ATGTCT-A--T-CA---A--TT-CT-T-CGCC-CG-ATTT-TATCCC-G-AA-GAG-GC-TGT-GATA-A---TCCA-ATATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT
gi|104604 : ATGTCT-AA-T-AA---A--TT-CT-T-CGCA-AG-A-AT-TAACCC-GGAA-GAG-AC-AGT-GATA-A-G-TCCAGAAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTT
gi|104605 : ATGTCT-A--TTCA---A--TT-CT-T-CGCC-AGTA-TT-TATCCC-G-AA-GAG-GC-TGT-GATA-A-ATTCCA-AACTCCA-------AAGCA-TA-T-TC-A-C-GA-G---ATATT
gi|104606 : ATGTCT-AGAT-AT---A--TT-CT-T-CGCA-AG-A-TT-TAACCC-G-AA-GAT-AC-AGT-GATA-A-G-TCCA-GAGTCAA-------GAT-A-TA-T-TC-ACC-GA-G--AAT-TTT
gi|104607 : ATGTCT-A--GATA---A--TT-CT-T-CGCACAG-A-TT-TACACC-G-AA-GAG--C-AGT-GATA-AGG-TCCA-GAGTC---------AAG-ATTA-T-TC-ACC-GA-G--AATATTT
gi|104608 : ATGTCT-A--T-CA---A--TT-CTGT-CGCAGAG-A-TT-TATCC--G-AA-AGT-AC-AGTTGATTTG-G-TCCA-AA--TCA-------AAG-A-TA-T-TC-ACC-GAGG--AATATTT
gi|104609 : ATGTCC-G--T-CG---A--TT-CT-T-TGCA-AG-A-TT-TATTCC-G-AA-GAG-AT-AGT-----------------GTCTA-------AAG-A-TA-T-TT-ACC-TA-G--ATTATTT
gi|104610 : ATGTCT-AGAT-AA---A--TTTCT-T-CGCA-AG-A-TT-TA-ACC-G-AA-GAG-AC-AGT-G--------TCCA-AAGTC---------AAG-A-TAATATC-ACC-GA-G--AATATTT
gi|104611 : ATGTCT-A--T-CA---G--TC-CT-T-CACA-AG-A-TT-TATCCT-G-AA-GAG-AC-AGT-GA
gi|104612 : ATGTCT----T-CATATG--TT-CT-T----A-AG-A-TTCTATCCC-G-AAAGAG-AG-A-T-GATA-A-G-TCCA-AAGTCCA-------AAG-A-TA-T-TC-ACG-TG-G--AATATTT
gi|104613 : TATCTCA--T-CA---AAATC-TT-T-CGCA-GA-A-TT-TATCCC-G-AAGGAG-AC-AGT-GTCA-A-GATCCA-AA
gi|104614 : GTCT-AGAT-CA---A--TT-AT-T-CGCA-AG-A-TT-TATCCC-G-AA-GAG-AC---T--------G-TTCA-AAGTCAA-------GAT-A-TA-T-TC-ACC-GA-A--AATATTTagtaacagaata
gi|104615 : A---A--CT-TC-T-CGCA-AG-A-TT-TAACCCGG-AA-GAT-ACGAGT-GATA-G-G-TCCA-GA--TCATACGGGCGAT-A-TA-T-TCAACC-GA-GAAAATATTT
gi|104616 : T-T-CGCC-AG-A-TT-AATCCC-G-AA-G-------------------TCCA-AAATCCA-------AAG-A-TA-T-TC-ACC-GA-G--AA
gi|104617 : GCA-AG-C-TT-CACTCC-G-AA-TAG-AC-AGT-GATA-G-G-TCCA-ATGTCCA-------AAG-A-TA-T-TC-ACC-GA-G--AATATTT