lowQualScore : 3333 22222222222222222222222222 444444444444
lowQualScore : 3333 2 3 1 1 1 1 44 22 1 99999 1 1 0 1 1 44 22222222222222222222222222 1 1 333 3 1 44 3 1 3 888888888888 3333 1 1 1 3 1 3 22 88 3 3 44 1 1 1 1 1 1 3 1 1 4 2 2
lowQualScore : .... . . . . . . .. .. . ..... . . . . . .. .......................... . . ... . . .. . . . ............ .... . . . . . . .. .. . . .. . . . . . . . . . . . .
lowQualScore : 7777 4 8 9 9 9 8 33 55 8 88888 8 8 4 8 8 33 00000000000000000000000000 8 8 222 6 8 33 6 8 6 222222222222 7777 7 7 7 5 7 3 33 44 3 3 00 7 7 7 7 7 7 5 9 9 0 0 0
consensus : ATTTTCA-N-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CA-TG-GGAAAT-CCTTT-CCAT--C--------------------------TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA------CA-G--TAT----T-AGTAA-GTT-C-TTAA-CA-CAA--AACA-TTTG-AAAA-GA--CATGA-C-AGC-C-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Reference ( gi|90649 ) : ATTTTC--T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CA-TG-GGAAAT-CCTTT-CCAT--C--------------------------TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA------TT-T--TAT----T-AGTAA-GTT-C-TTAA-CA-CAA--AACA-CTTG-AAAA-GA--CATGA-C-AGC-C-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90635 : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATCTA-T--ATCC--AG-AAA---A-CA-TG-GAAAAT-CCTTT-CCAT--C--------------------------TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA------CA-G--TAT----T-AGTAA-GTC-C-TGAA-CA-CAA--AACA-TTTG-AAAA-GG--CATGA-C-AGA-C-A-C-T-CT-TG-AAACATGG-A-AGA-AGAA
gi|90637 : cATTTGCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CA-TG-GGAAAT-CCTTT-CCAT--C--------------------------TT-G-CCCGAA---AA-TATCCAA--AA-A-G-AA------CA-C--TAT----T-AGTAA-GTT-T-TTAA-CA-TAA--AACA-TTTT-AAAA-TA--CATGG-T-AGC-C-A-C-T-CT-TG-AAACATGG-A-TGA-AAAA
gi|90636 : cATTTTC--AAG-ATCCTATT-C-A-GA-ATTAA-T--ATGT--AG-AAA---A-CA-TG-GGAAGT-CCTTT-CCAT--C--------------------------TC-A-TCCGAA---AA-TGTTC-A--AA-A-G-AA------CA-G--TAT----T-AGCAA-GTT-C-TTGG-CA-CAA--AACA-TTTG-AAAA-GA--CATGA-C-AGC-A-A-C-T-CT-TA-AAACATGG-A-TAA-AGAA
gi|90638 : cATTTGCATT-G-ATCCCTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CA-TG-GGAAATCCCTTT-CCAT--C--------------------------TT-G-CCCGAA---AA-TATCC-A--AA-A-G-AA------CA-C--TAT----T-AGTAA-GTT-T-TT-A-CA-TAA--AACA-TTTT-AAAA-TA--CATGG-T-AGC-C-ACC-T-CT-TG-AAACATGGCA-TGA-AAAA
gi|90650 : cATTTTC--A-T-TTCCTTTT-C-A-GA-ATTAT-T--ATCC--AG-AAT-----CA-TG-GGAAAT-CCCTT--CAT--C--------------------------TT-GTTCCGAA---AA-TGTCC-A--AA-A-G-AA------CA-A--TAT----T-AGTAA-GTT-C-TTAA-CA-CAA--AATA--TTG-AAAA-GA--CATGA-C-AGC-C-A-C-T-
gi|90644 : ATTTTCA-T-A-ATCCTTTT-C-A-GA-GTTGA-TT-ATCC--AG-AAA---AACA-TG-GTAAAT-CCTTT-CCAT--CAGAGTTATATATGTCGTTTTCCCAATTT-G-TCCGAA---AAATGTCC-A--AA-AAG-AA------CAAG--TAT----T-AGTAA-GTT-C-TTAA-CA-CAA--AACA-TTTG-AAAA-GA--CATGA-C-AGC-CGA-CTT-CT-TG--AAC-TGGAA-TGA-AGAA
gi|90645 : cATTTTCA-T-GCATCCTTT--C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CA-TG-CGGAAT-CTCTT-CCAT--C--------------------------TT-G-TCCGAA---AA-TGTCA-A--AA-A-ACAA-------------GT----T-AG-AA-GTC-CTTTAA-TACCAA--AACA-TTTGAAAAA-GA--CATGA-C-AGTAC-A---T-CT-TG-AAA
gi|90647 : cATTTTC--AAG-ATCCTTTT-C-A-GA-ATTAA-T--ATCT--A--AAA---A-CA-TG-GGAAGT-CATTT-CCAT--C--------------------------TT-G-
gi|90639 : cTTTTA--A-G-ATCATTTT-C-A-GA-ATTAA-T--ATCT--AG-AAT---A-CA-CG-GAAAGT-CCT---CCAT--T--------------------------TT-G-TCCGAA---TA-TGTTC-A--AA-A-G-AA------AA-G--TAT----T-AGAAA-GTT-C-TTAC-CA-CAA--AACA-TTTG-AAAA-GA--CACGA-C-AGC-C-A-C-C-CT-TG-AAACATGG-A-TGA-AGAA
gi|90651 : catTTTTC--AAG-ATCCTATT-C-A-GA-ATTAA-T--ATCT--AGAAAA---A-CA-CG-GGAAAT--CTTT-CCAT--C--------------------------TT-G-TTCGAA---AA-TGTCT-A--CA-A-G-AA------CA-G--TAT----T-AGT-A-GTT-C-TTAA-CA-CAA--AACA-TTTG-AATA-GA--CACGG-C-AGC-C-A-C-TAAT-TG-AAACATGG-A-TGAGAGA
gi|90643 : TTTTCAAG-G-ATCCCTTT-T-A-GC-ATTAA-T--TACT--AG-AAA-----CACTG-GGCAGT-CCTTT-CCAT--C--------------------------TTTG-TCCGAT---AA-TGTCC-ATGAA-A-G-AA------TA-G--TAT----T-AGTAA-GTTTC-TTGA-CA-CAA--A-CA-TTTG-AAAG-GA--CATGA-C-AGC-C-A-C-T-CTCTG-AAACATAG-ATTGA-AGAA
gi|90646 : cgTTTTC--A-T-ATCCTTTT-C-A-GATATTAA-T--ATCC--AG-ATATATA-CA-TG-TAAAAT-CTT----CAT--CGCT-----------------------TT-G-TCCGAA---AA-TGT-C-A--AA-A-G-AA------AA-G--TAT----TAAGTAA-GTC-CTTTAA-CAGCAA--AAC--TTTG-AAAA-GGATCATG
gi|90641 : catTTTCA-T-G-ATCCTTTTTC-A-GA-ATTGA-T--ATCC--AG-AAA---AACA-TG-GGAA-T-CCTTT-CCATATC--------------------------TT-G-TCCG-A---AA-TGTCC-A--AA-A-GAAA------CA-G--TAG----T-ACTAA-GTT-C-TTAA-CA-CAA--AACA-TTTG-AAAA-GA--CATGA-CGAGC-C-A---T-TT-TG-AAACATCG-A-TGA-AGA
gi|90653 : cagTTTCA-T-G-ATCCTTTTTC-A-GA-ATTAAAT--ATCC--AG-AAA---A-GA-TG-GGAAAT-CCTTT-CCAT--C--------------------------TT-G-TCCAAA---AA--G----A--AC-A-G---------------TAT----T-AGTAA-GTC-C-TTAA-CA-CAA--AACA-TTTGAAAAA-GA--CATGA-C-AGC-C-A-T-C-TT-TG-AAACATGG-A-AGA-AGAA
gi|90642 : TTTCA-T-G--TCCTTTT-C-AAGA-ATTAA-T---TCC---G-AAA---A-C--TG-GGAA-T-CCTTT-CCAT--C--------------------------TT-G-TCCGAA---A--TGTCC-A--AA---G-AA------CA-G--TAT----T-ACTAATGTT-C-TTAA--A-CAA--AACA-TTTG-AAAA-GA--CATGA-C-AGC-C-T-T-T-CT-T--AAACATGG-A-TGA-AGAA
gi|90640 : cag--T-G-ATCCTTTT-C-A-GA-ATTGA-T--ATGC--AG-GAA---A-CA-TG-GGAAAT-CCTAT-CCAT--C--------------------------TT-G-TCTGAA---AA-TGTCC-A--AA-A-G---------TT-TAGTAT----T-ATTAA-GAT-C-TTAA-CA-CAA--AACA-TTGG-AAAA-GA--CATGA-C-AGC-C-A-C-G-AT-TG-AAACATGG-A-TGA-AGAA
gi|90654 : cattgcca-G-ATCGTTTT-C-A-GA-AATGC-T--ATCT--AG-AAA---A-CA-AA-AGAAAA-TATTT-C-AT--C--------------------------TT-G-CTTGAA---AT-TATAT-A--AA-A-A-AAAAA---CA-G--TAG----T-AGTAA-GTT-C-ATAA-CA-TAA--AACA-TTTG-AAAA-GA--TATGA-C-AGA-C-A-C-T-CT-TG-CAACATGG-A-TGA-AGA
gi|90655 : ttcaaCTTTTT-C-A-TG-ATCCT-T--ATCC--AG-AAA---AACA-TG-GGGAAT-TTTTTTCCAT--C--------------------------TT-A-TCCGAA---AA-AGTCC-AG-AA-A-G-AACAG---TA-T--TACAATGT-AGTAA-GTT-C-TTAA-CA-CAA--AACA-TTTA-AAAA-GA--CATGA-C-AGC-C-A-C-T-CT-TG-AAACATGC-A-TGA-AGAA
gi|90656 : CCTGTT-CTA-GA-ATTAA-TTTATCCTCAG-AAA---A-CA-TG-GAAAAT-CTTTT-CCAT--C--------------------------TT-G-TCCTAACCTAACTGTCC----AA-A-G-AACAGTCCCT-C--TGA----T-A--AA-GTC-C-TTAACCA-CAAATAGCAGCTTG-AAAACGAC-CCTGAGC-CAT-C-A-C-T-C--TG-GAACGTGG-A-AGA-
gi|90652 : TTTT-C-A-GC-ATCA--T--AATC--AG-ATATT-A-CA-TC-TAGAAT---TTT-CTAT--C--------------------------AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA------TA-G--TAT----A-AGTGA-GTT-C-TTGA-T--------GGT-TTTG-AAAA-GA--CATAA-T-AGA-C-A-C-T-CT-TG-AAACATGG-A-TG--AGAAaga
gi|90657 : TTT-C-A-GC-ATCAA-T--AATC--AG-ATATT-G-CA-TCTAGAA-----TTT-CTATT-C--------------------------AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA------TA-G--TAT----A-AGTGA-GTT---TTGA-TG-GT--------TTTG-AAAAAGA--CATAA-T-AGA-C-A-C-TTCT-TG-AAACATGG-A-TG--AGAA
gi|90658 : AA-T--TTCC--AG-AAA---A-CA-TA-GGAAAT-CCTTT-CCAT--T--------------------------AT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA------AG-G--TAT----T-ATCAA-GTT-C-TGAA-CA-CAG--AACA-TTTG-AAAA-GA--CATGG-C-AGC-C-A-C-T-C
gi|90659 : AA---AA-TGTCT-A--AA---------------------T----T-GGTAA-GTT-C-TCAA-CT-CAA--AACA-TT------A-GA--------------C-A-C-T-CT-TGAAAACATGG-A-TGA-AGA
gi|90648 : --TAT----T-AGTAA-GTT-C-TTAA-CA-TAA--AACT-TTTG-TAAA-TA--TATGG-C-AGA-C-T-C-T-CT-TG-AAACATGG-A-TGA-AGA
gi|90660 : cgtttacaaaatcattttcagtaagaaaaaaatatctagaaaatgcagagaagtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaacagTAA-CA-CAA--AACA-TTTG-AAAA-GA--CATGA-C-AGT-T-A-C-T-CT-TG-AAATGTGG-A-AGA-AGAA
Alignments
lowQualScore : 111111 22222222222222222222222222222222222222222222222
lowQualScore : 33 4 3 1 1 44444 1 1 44 22 1 000000 1 0 99999999999999999999999999999999999999999999999 1 44 222 1 1 222 3 1 44 3 1 1 222 1 222 1 5555555 1 1 1 3 1 3 22 1 22 3 1 33 1 1 1 1 5 1 1 1 3 1 1
lowQualScore : .. . . . . ..... . . .. .. . ...... . . ............................................... . .. ... . . ... . . .. . . . ... . ... . ....... . . . . . . .. . .. . . .. . . . . . . . . . . .
lowQualScore : 00 0 5 7 7 33333 7 7 00 33 7 111111 7 2 88888888888888888888888888888888888888888888888 7 00 999 7 7 999 3 7 00 3 7 7 999 7 999 7 4444444 7 7 7 3 6 2 22 6 22 2 6 88 7 7 7 7 0 7 8 8 8 9 9
consensus : ATTTTCAT-G-ATCCTTTT-C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-GGAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Reference ( family-697 ) : ATTTTCAN-G-ATCCTTTT-C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-GGAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90635 : ATTTTCAT-G-ATCCTTTT-C-A-G-----A-ATCTA-T--ATCC--AG-AAA---A--CATG-GAAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TGAA-CA-CAA--AACA-TTT--G-AAAA-GG--CATGA-C-AGAC-A-C-T-CT-TG-AAACATGG-A-AGA-AGAA
gi|90636 : cATTTTCAA-G-ATCCTATT-C-A-G-----A-ATTAA-T--ATGT--AG-AAA---A--CATG-GGAAGTC--------------------C--------------------------TTT-CCAT--C---TC-A-TCCGAA---AA-TGTTC-A--AA-A-G-AA---CA-GTA---TT-A-------GC-AA-G-TTC-TTGG-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCA-A-C-T-CT-TA-AAACATGG-A-TAA-AGAA
gi|90637 : cATTTGCAT-G-ATCCTTTT-C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-GGAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCCAA--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TTAA-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AAAA
gi|90638 : cATTTGCATTG-ATCCCTTT-C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-GGAAATC--------------------CC-------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCC-A--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TT-A-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-ACC-T-CT-TG-AAACATGGCA-TGA-AAAA
gi|90639 : cATTTTTAA-G-ATCATTTT-C-A-G-----A-ATTAA-T--ATCT--AG-AAT---A--CACG-GAAAGTC--------------------C--------------------------T---CCAT--T---TT-G-TCCGAA---TA-TGTTC-A--AA-A-G-AA---AA-GTA---TT-A-------GA-AA-G-TTC-TTAC-CA-CAA--AACA-TTT--G-AAAA-GA--CACGA-C-AGCC-A-C-C-CT-TG-AAACATGG-A-TGA-AGAA
gi|90640 : cATTGCCAT-G-ATCCTTTT-C-A-G-----A-ATTGA-T--ATGC--AG-GAA---A--CATG-GGAAATC--------------------C--------------------------TAT-CCAT--C---TT-G-TCTGAA---AA-TGTCC-A--AA-A-G-TT---TA-GTA---TT-A-------TT-AA-G-ATC-TTAA-CA-CAA--AACA-TTG--G-AAAA-GA--CATGA-C-AGCC-A-C-G-AT-TG-AAACATGG-A-TGA-AGAA
gi|90641 : cTTTCAT-G-ATCCTTTTTC-A-G-----A-ATTGA-T--ATCC--AG-AAA---AA-CATG-GGAA-TC--------------------C--------------------------TTT-CCATATC---TT-G-TCCG-A---AA-TGTCC-A--AA-A-GAAA---CA-GTA---GT-A-------CT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-CGAGCC-A---T-TT-TG-AAACATCG-A-TGA-AGA
gi|90642 : cagTTTCAT-G--TCCTTTT-C-AAG-----A-ATTAA-T---TCC---G-AAA---A--C-TG-GGAA-TC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCGAA---A--TGTCC-A--AA---G-AA---CA-GTA---TT-A-------CT-AATG-TTC-TTAA--A-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-T-T-T-CT-T--AAACATGG-A-TGA-AGAA
gi|90643 : cagTTTTCAA-GGATCCCTTT-T-A-G-----C-ATTAA-T--TACT--AG-AAAC--A--C-TG-GGCAGTC--------------------C--------------------------TTT-CCAT--C---TTTG-TCCGAT---AA-TGTCC-ATGAA-A-G-AA---TA-GTA---TT-A-------GT-AA-GTTTC-TTGA-CA-C-A--AACA-TTT--G-AAAG-GA--CATGA-C-AGCC-A-C-T-CTCTG-AAACATAG-ATTGA-AGAA
gi|90644 : cgATTTTCAT-A-ATCCTTTT-C-A-G-----A-GTTGA-TT-ATCC--AG-AAA---AA-CATG-GTAAATC--------------------CTTTCCATCAGAGTTATATATGTCGTTTTC-CCAA--T---TT-G-TCCGAA---AAATGTCC-A--AA-AAG-AA---CAAGTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCCGA-CTT-CT-TG--AAC-TGGAA-TGA-AGAA
gi|90645 : cATTTTCAT-GCATCCTTT--C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-CGGAATC--------------------T--------------------------CTT-CCAT--C---TT-G-TCCGAA---AA-TGTC-----AA-A-A-AA---CA-A-G---TT-A-------G--AA-G-TCCTTTAA-TACCAA--AACA-TTT--GAAAAA-GA--CATGA-C-AG-T-A-CAT-CT-TG-AAA
gi|90646 : cTTTTCAT---ATCCTTTT-C-A-G-----ATATTAA-T--ATCC--AG-ATATATA--CATG-TAAAATC--------------------T--------------------------T----CAT--CGCTTT-G-TCCGAA---AA-TGT-C-A--AA-A-G-AA---AA-GTA---TTAA-------GT-AA-G-TCCTTTAA-CAGCAA--AAC--TTT--G-AAAA-GGATCATG
gi|90647 : catATTTTCAA-G-ATCCTTTT-C-A-G-----A-ATTAA-T--ATCT--A--AAA---A--CATG-GGAAGTC--------------------A--------------------------TTT-CCAT--C---TT-G-
gi|90648 : cTTTACAA-A-ATCATTTT-C-A-GTAAGAA-AAAAA-T--ATCT--AG-AAA---ATGCA-G-AGAAGTCAANNNNNNNNNNNNNNNNNNN--------------------------NNN-NNNN--N---NN-N-NNNNNN---NN-NNNNN-N--NN-N-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-TAA--AACT-TTT--G-TAAA-TA--TATGG-C-AGAC-T-C-T-CT-TG-AAACATGG-A-TGA-AGA
gi|90649 : cgATTTTC-T-G-ATCCTTTT-C-A-G-----A-ATTAA-T--ATCC--AG-AAA---A--CATG-GGAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---TT-TTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-CTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90650 : ATTTTCAT-T--TCCTTTT-C-A-G-----A-ATTAT-T--ATCC--AG-AAT------CATG-GGAAATC--------------------C--------------------------CTT--CAT--C---TT-GTTCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-ATA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AATA--TT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-
gi|90651 : TTTTCAA-G-ATCCTATT-C-A-G-----A-ATTAA-T--ATCT--AGAAAA---A--CACG-GGAAAT---------------------C--------------------------TTT-CCAT--C---TT-G-TTCGAA---AA-TGTCT-A--CA-A-G-AA---CA-GTA---TT-A-------GT--A-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AATA-GA--CACGG-C-AGCC-A-C-TAAT-TG-AAACATGG-A-TGAGAGA
gi|90652 : TTTT-C-A-G-----C-ATCA--T--AATC--AG-ATATT-A--CATC-TAGAAT------------------------------------------------TTT-CTAT--C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TTC-TTGA-T--------GGT-TTT--G-AAAA-GA--CATAA-T-AGAC-A-C-T-CT-TG-AAACATGG-A-TG--AGAA
gi|90653 : TTTCAT-G-ATCCTTTTTC-A-G-----A-ATTAAAT--ATCC--AG-AAA---A--GATG-GGAAATC--------------------C--------------------------TTT-CCAT--C---TT-G-TCCAAA---AA---------------G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TTAA-CA-CAA--AACA-TTT--GAAAAA-GA--CATGA-C-AGCC-A-T-C-TT-TG-AAACATGG-A-AGA-AGAA
gi|90654 : TTCAA-G-ATCGTTTT-C-A-G-----A-AATGC-T--ATCT--AG-AAA---A--CAAA-AGAAAAT--------------------A--------------------------TTT-C-AT--C---TT-G-CTTGAA---AT-TATAT-A--AA-A-A-AAAAACA-GTA---GT-A-------GT-AA-G-TTC-ATAA-CA-TAA--AACA-TTT--G-AAAA-GA--TATGA-C-AGAC-A-C-T-CT-TG-CAACATGG-A-TGA-AGA
gi|90655 : TTTTCAT-G-ATCCTT------------------------ATCC--AG-AAA---AA-CATG-GGGAATT--------------------T--------------------------TTTTCCAT--C---TT-A-TCCGAA---AA-AGTCC-AG-AA-A-G-AA---CA-GTA---TT-ACAATGTAGT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--A-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGC-A-TGA-AGAA
gi|90656 : ctCCTGTT-CTA-G-----A-ATTAA-TTTATCCTCAG-AAA---A--CATG-GAAAATC--------------------T--------------------------TTT-CCAT--C---TT-G-TCCTAACCTAACTGTCC----AA-A-G-AA---CA-GTCCCTCT-G-------ATAAA-G-TCC-TTAACCA-CAAATAGCAGCTT--G-AAAACGAC-CCTGAGC-CATC-A-C-T-C--TG-GAACGTGG-A-AGA-
gi|90657 : TTT-C-A-G-----C-ATCAA-T--AATC--AG-ATATT-G--CATCTAGAA--------------------------------------------------TTT-CTATT-C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TT--TTGA-TG---------G-TTTTGA-AAAA-GA--CATAA-T-AGAC-A-CTT-CT-TG-AAACATGG-A-TG--AGAAaga
gi|90658 : AA-T--TTCC--AG-AAA---A--CATA-GGAAATC--------------------C--------------------------TTT-CCAT--T---AT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---AG-GTA---TT-A-------TC-AA-G-TTC-TGAA-CA-CAG--AACA-TTT--G-AAAA-GA--CATGG-C-AGCC-A-C-T-C
gi|90659 : AA---AA-TGTCT-A--AA-------------------TT-G-------GT-AA-G-TTC-TCAA-CT-CAA--AACA-TT--------A-GA-------------C-A-C-T-CT-TGAAAACATGG-A-TGA-AGA
gi|90660 : TAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGTT-A-C-T-CT-TG-AAATGTGG-A-AGA-AGAA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333 2 3 1 1 1 1 44 22 1 999 5 1 99999999999999999999999999 1 44 333 1 1 333 3 1 44 3 1 1 222 1 222 1 5555555 1 1 1 3 1 3 22 1 22 3 1 33 1 1 1 1 5 1 1 1 3 1 1
lowQualScore : ... . . . . . . .. .. . ... . . .......................... . .. ... . . ... . . .. . . . ... . ... . ....... . . . . . . .. . .. . . .. . . . . . . . . . . .
lowQualScore : 333 1 6 8 8 8 7 11 44 7 666 2 7 88888888888888888888888888 7 11 000 7 7 000 5 7 11 5 7 7 999 7 999 7 4444444 7 7 7 3 6 2 22 6 22 2 6 88 7 7 7 7 0 7 8 8 8 9 9
consensus : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Reference ( family-697 ) : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90635 : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATCTA-T--ATCC--AG-AAA---A-CATG-GAAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TGAA-CA-CAA--AACA-TTT--G-AAAA-GG--CATGA-C-AGAC-A-C-T-CT-TG-AAACATGG-A-AGA-AGAA
gi|90636 : cATTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATGT--AG-AAA---A-CATG-GGAAGTCC--------------------------TTT-CCAT--C---TC-A-TCCGAA---AA-TGTTC-A--AA-A-G-AA---CA-GTA---TT-A-------GC-AA-G-TTC-TTGG-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCA-A-C-T-CT-TA-AAACATGG-A-TAA-AGAA
gi|90637 : cATTTGCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCCAA--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TTAA-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AAAA
gi|90638 : cATTTGCA-TTG-ATCCCTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCCC-------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCC-A--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TT-A-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-ACC-T-CT-TG-AAACATGGCA-TGA-AAAA
gi|90639 : cATTTTTA-A-G-ATCATTTT-C-A-GA-ATTAA-T--ATCT--AG-AAT---A-CACG-GAAAGTCC--------------------------T---CCAT--T---TT-G-TCCGAA---TA-TGTTC-A--AA-A-G-AA---AA-GTA---TT-A-------GA-AA-G-TTC-TTAC-CA-CAA--AACA-TTT--G-AAAA-GA--CACGA-C-AGCC-A-C-C-CT-TG-AAACATGG-A-TGA-AGAA
gi|90640 : cATTGCCA-T-G-ATCCTTTT-C-A-GA-ATTGA-T--ATGC--AG-GAA---A-CATG-GGAAATCC--------------------------TAT-CCAT--C---TT-G-TCTGAA---AA-TGTCC-A--AA-A-G-TT---TA-GTA---TT-A-------TT-AA-G-ATC-TTAA-CA-CAA--AACA-TTG--G-AAAA-GA--CATGA-C-AGCC-A-C-G-AT-TG-AAACATGG-A-TGA-AGAA
gi|90641 : cTTTCA-T-G-ATCCTTTTTC-A-GA-ATTGA-T--ATCC--AG-AAA---AACATG-GGAA-TCC--------------------------TTT-CCATATC---TT-G-TCCG-A---AA-TGTCC-A--AA-A-GAAA---CA-GTA---GT-A-------CT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-CGAGCC-A---T-TT-TG-AAACATCG-A-TGA-AGA
gi|90642 : cagTTTCA-T-G--TCCTTTT-C-AAGA-ATTAA-T---TCC---G-AAA---A-C-TG-GGAA-TCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---A--TGTCC-A--AA---G-AA---CA-GTA---TT-A-------CT-AATG-TTC-TTAA--A-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-T-T-T-CT-T--AAACATGG-A-TGA-AGAA
gi|90643 : cagTTTTCAAG-G-ATCCCTTT-T-A-GC-ATTAA-T--TACT--AG-AAAC--A-C-TG-GGCAGTCC--------------------------TTT-CCAT--C---TTTG-TCCGAT---AA-TGTCC-ATGAA-A-G-AA---TA-GTA---TT-A-------GT-AA-GTTTC-TTGA-CA-C-A--AACA-TTT--G-AAAG-GA--CATGA-C-AGCC-A-C-T-CTCTG-AAACATAG-ATTGA-AGAA
gi|90644 : cgATTTTCA-T-A-ATCCTTTT-C-A-GA-GTTGA-TT-ATCC--AG-AAA---AACATG-GTAAATCCTTTCCATCAGAGTTATATATGTCGTTTTC-CCAA--T---TT-G-TCCGAA---AAATGTCC-A--AA-AAG-AA---CAAGTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCCGA-CTT-CT-TG--AAC-TGGAA-TGA-AGAA
gi|90645 : cATTTTCA-T-GCATCCTTT--C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-CGGAATCT--------------------------CTT-CCAT--C---TT-G-TCCGAA---AA-TGTC-----AA-A-A-AA---CA-A-G---TT-A-------G--AA-G-TCCTTTAA-TACCAA--AACA-TTT--GAAAAA-GA--CATGA-C-AG-T-A-CAT-CT-TG-AAA
gi|90646 : cTTTTCA-T---ATCCTTTT-C-A-GATATTAA-T--ATCC--AG-ATATATA-CATG-TAAAATCT--------------------------T----CAT--CGCTTT-G-TCCGAA---AA-TGT-C-A--AA-A-G-AA---AA-GTA---TTAA-------GT-AA-G-TCCTTTAA-CAGCAA--AAC--TTT--G-AAAA-GGATCATG
gi|90647 : catATTTTCA-A-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCT--A--AAA---A-CATG-GGAAGTCA--------------------------TTT-CCAT--C---TT-G-
gi|90648 : c-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-TAA--AACT-TTT--G-TAAA-TA--TATGG-C-AGAC-T-C-T-CT-TG-AAACATGG-A-TGA-AGA
gi|90649 : cgtttacaaaatcattttcagtaagaaaaaaatatctagaaaatgcagagaagtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC--T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---TT-TTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-CTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90650 : ATTTTCA-T-T--TCCTTTT-C-A-GA-ATTAT-T--ATCC--AG-AAT-----CATG-GGAAATCC--------------------------CTT--CAT--C---TT-GTTCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-ATA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AATA--TT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-
gi|90651 : TTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATCT--AGAAAA---A-CACG-GGAAAT-C--------------------------TTT-CCAT--C---TT-G-TTCGAA---AA-TGTCT-A--CA-A-G-AA---CA-GTA---TT-A-------GT--A-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AATA-GA--CACGG-C-AGCC-A-C-TAAT-TG-AAACATGG-A-TGAGAGA
gi|90652 : TTTT-C-A-GC-ATCA--T--AATC--AG-ATATT-A-CATC-TAGAAT----------------------------TTT-CTAT--C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TTC-TTGA-T--------GGT-TTT--G-AAAA-GA--CATAA-T-AGAC-A-C-T-CT-TG-AAACATGG-A-TG--AGAA
gi|90653 : TTTCA-T-G-ATCCTTTTTC-A-GA-ATTAAAT--ATCC--AG-AAA---A-GATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCAAA---AA---------------G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TTAA-CA-CAA--AACA-TTT--GAAAAA-GA--CATGA-C-AGCC-A-T-C-TT-TG-AAACATGG-A-AGA-AGAA
gi|90654 : TTCA-A-G-ATCGTTTT-C-A-GA-AATGC-T--ATCT--AG-AAA---A-CAAA-AGAAAATA--------------------------TTT-C-AT--C---TT-G-CTTGAA---AT-TATAT-A--AA-A-A-AAAAACA-GTA---GT-A-------GT-AA-G-TTC-ATAA-CA-TAA--AACA-TTT--G-AAAA-GA--TATGA-C-AGAC-A-C-T-CT-TG-CAACATGG-A-TGA-AGA
gi|90655 : TTTTCA-T-G-ATCCTT-------------------ATCC--AG-AAA---AACATG-GGGAATTT--------------------------TTTTCCAT--C---TT-A-TCCGAA---AA-AGTCC-AG-AA-A-G-AA---CA-GTA---TT-ACAATGTAGT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--A-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGC-A-TGA-AGAA
gi|90656 : ctCCTGTT-CTA-GA-ATTAA-TTTATCCTCAG-AAA---A-CATG-GAAAATCT--------------------------TTT-CCAT--C---TT-G-TCCTAACCTAACTGTCC----AA-A-G-AA---CA-GTCCCTCT-G-------ATAAA-G-TCC-TTAACCA-CAAATAGCAGCTT--G-AAAACGAC-CCTGAGC-CATC-A-C-T-C--TG-GAACGTGG-A-AGA-
gi|90657 : TTT-C-A-GC-ATCAA-T--AATC--AG-ATATT-G-CATCTAGAA------------------------------TTT-CTATT-C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TT--TTGA-TG---------G-TTTTGA-AAAA-GA--CATAA-T-AGAC-A-CTT-CT-TG-AAACATGG-A-TG--AGAAaga
gi|90658 : AA-T--TTCC--AG-AAA---A-CATA-GGAAATCC--------------------------TTT-CCAT--T---AT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---AG-GTA---TT-A-------TC-AA-G-TTC-TGAA-CA-CAG--AACA-TTT--G-AAAA-GA--CATGG-C-AGCC-A-C-T-C
gi|90659 : AA---AA-TGTCT-A--AA-------------------TT-G-------GT-AA-G-TTC-TCAA-CT-CAA--AACA-TT--------A-GA-------------C-A-C-T-CT-TGAAAACATGG-A-TGA-AGA
gi|90660 : TAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGTT-A-C-T-CT-TG-AAATGTGG-A-AGA-AGAA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333 2 3 1 1 1 1 44 22 1 999 5 1 99999999999999999999999999 1 44 333 1 1 333 3 1 44 3 1 1 222 1 222 1 5555555 1 1 1 3 1 3 22 1 22 3 1 33 1 1 1 1 5 1 1 1 3 1 1
lowQualScore : ... . . . . . . .. .. . ... . . .......................... . .. ... . . ... . . .. . . . ... . ... . ....... . . . . . . .. . .. . . .. . . . . . . . . . . .
lowQualScore : 333 1 6 8 8 8 7 11 44 7 666 2 7 88888888888888888888888888 7 11 000 7 7 000 5 7 11 5 7 7 999 7 999 7 4444444 7 7 7 3 6 2 22 6 22 2 6 88 7 7 7 7 0 7 8 8 8 9 9
consensus : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Reference ( family-697 ) : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90635 : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATCTA-T--ATCC--AG-AAA---A-CATG-GAAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TGAA-CA-CAA--AACA-TTT--G-AAAA-GG--CATGA-C-AGAC-A-C-T-CT-TG-AAACATGG-A-AGA-AGAA
gi|90636 : cATTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATGT--AG-AAA---A-CATG-GGAAGTCC--------------------------TTT-CCAT--C---TC-A-TCCGAA---AA-TGTTC-A--AA-A-G-AA---CA-GTA---TT-A-------GC-AA-G-TTC-TTGG-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCA-A-C-T-CT-TA-AAACATGG-A-TAA-AGAA
gi|90637 : cATTTGCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCCAA--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TTAA-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AAAA
gi|90638 : cATTTGCA-TTG-ATCCCTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCCC-------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCC-A--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TT-A-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-ACC-T-CT-TG-AAACATGGCA-TGA-AAAA
gi|90639 : cATTTTTA-A-G-ATCATTTT-C-A-GA-ATTAA-T--ATCT--AG-AAT---A-CACG-GAAAGTCC--------------------------T---CCAT--T---TT-G-TCCGAA---TA-TGTTC-A--AA-A-G-AA---AA-GTA---TT-A-------GA-AA-G-TTC-TTAC-CA-CAA--AACA-TTT--G-AAAA-GA--CACGA-C-AGCC-A-C-C-CT-TG-AAACATGG-A-TGA-AGAA
gi|90640 : cATTGCCA-T-G-ATCCTTTT-C-A-GA-ATTGA-T--ATGC--AG-GAA---A-CATG-GGAAATCC--------------------------TAT-CCAT--C---TT-G-TCTGAA---AA-TGTCC-A--AA-A-G-TT---TA-GTA---TT-A-------TT-AA-G-ATC-TTAA-CA-CAA--AACA-TTG--G-AAAA-GA--CATGA-C-AGCC-A-C-G-AT-TG-AAACATGG-A-TGA-AGAA
gi|90641 : cTTTCA-T-G-ATCCTTTTTC-A-GA-ATTGA-T--ATCC--AG-AAA---AACATG-GGAA-TCC--------------------------TTT-CCATATC---TT-G-TCCG-A---AA-TGTCC-A--AA-A-GAAA---CA-GTA---GT-A-------CT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-CGAGCC-A---T-TT-TG-AAACATCG-A-TGA-AGA
gi|90642 : cagTTTCA-T-G--TCCTTTT-C-AAGA-ATTAA-T---TCC---G-AAA---A-C-TG-GGAA-TCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---A--TGTCC-A--AA---G-AA---CA-GTA---TT-A-------CT-AATG-TTC-TTAA--A-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-T-T-T-CT-T--AAACATGG-A-TGA-AGAA
gi|90643 : cagTTTTCAAG-G-ATCCCTTT-T-A-GC-ATTAA-T--TACT--AG-AAAC--A-C-TG-GGCAGTCC--------------------------TTT-CCAT--C---TTTG-TCCGAT---AA-TGTCC-ATGAA-A-G-AA---TA-GTA---TT-A-------GT-AA-GTTTC-TTGA-CA-C-A--AACA-TTT--G-AAAG-GA--CATGA-C-AGCC-A-C-T-CTCTG-AAACATAG-ATTGA-AGAA
gi|90644 : cgATTTTCA-T-A-ATCCTTTT-C-A-GA-GTTGA-TT-ATCC--AG-AAA---AACATG-GTAAATCCTTTCCATCAGAGTTATATATGTCGTTTTC-CCAA--T---TT-G-TCCGAA---AAATGTCC-A--AA-AAG-AA---CAAGTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCCGA-CTT-CT-TG--AAC-TGGAA-TGA-AGAA
gi|90645 : cATTTTCA-T-GCATCCTTT--C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-CGGAATCT--------------------------CTT-CCAT--C---TT-G-TCCGAA---AA-TGTC-----AA-A-A-AA---CA-A-G---TT-A-------G--AA-G-TCCTTTAA-TACCAA--AACA-TTT--GAAAAA-GA--CATGA-C-AG-T-A-CAT-CT-TG-AAA
gi|90646 : cTTTTCA-T---ATCCTTTT-C-A-GATATTAA-T--ATCC--AG-ATATATA-CATG-TAAAATCT--------------------------T----CAT--CGCTTT-G-TCCGAA---AA-TGT-C-A--AA-A-G-AA---AA-GTA---TTAA-------GT-AA-G-TCCTTTAA-CAGCAA--AAC--TTT--G-AAAA-GGATCATG
gi|90647 : catATTTTCA-A-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCT--A--AAA---A-CATG-GGAAGTCA--------------------------TTT-CCAT--C---TT-G-
gi|90648 : c-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-TAA--AACT-TTT--G-TAAA-TA--TATGG-C-AGAC-T-C-T-CT-TG-AAACATGG-A-TGA-AGA
gi|90649 : cgtttacaaaatcattttcagtaagaaaaaaatatctagaaaatgcagagaagtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC--T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---TT-TTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-CTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90650 : ATTTTCA-T-T--TCCTTTT-C-A-GA-ATTAT-T--ATCC--AG-AAT-----CATG-GGAAATCC--------------------------CTT--CAT--C---TT-GTTCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-ATA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AATA--TT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-
gi|90651 : TTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATCT--AGAAAA---A-CACG-GGAAAT-C--------------------------TTT-CCAT--C---TT-G-TTCGAA---AA-TGTCT-A--CA-A-G-AA---CA-GTA---TT-A-------GT--A-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AATA-GA--CACGG-C-AGCC-A-C-TAAT-TG-AAACATGG-A-TGAGAGA
gi|90652 : TTTT-C-A-GC-ATCA--T--AATC--AG-ATATT-A-CATC-TAGAAT----------------------------TTT-CTAT--C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TTC-TTGA-T--------GGT-TTT--G-AAAA-GA--CATAA-T-AGAC-A-C-T-CT-TG-AAACATGG-A-TG--AGAA
gi|90653 : TTTCA-T-G-ATCCTTTTTC-A-GA-ATTAAAT--ATCC--AG-AAA---A-GATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCAAA---AA---------------G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TTAA-CA-CAA--AACA-TTT--GAAAAA-GA--CATGA-C-AGCC-A-T-C-TT-TG-AAACATGG-A-AGA-AGAA
gi|90654 : TTCA-A-G-ATCGTTTT-C-A-GA-AATGC-T--ATCT--AG-AAA---A-CAAA-AGAAAATA--------------------------TTT-C-AT--C---TT-G-CTTGAA---AT-TATAT-A--AA-A-A-AAAAACA-GTA---GT-A-------GT-AA-G-TTC-ATAA-CA-TAA--AACA-TTT--G-AAAA-GA--TATGA-C-AGAC-A-C-T-CT-TG-CAACATGG-A-TGA-AGA
gi|90655 : TTTTCA-T-G-ATCCTT-------------------ATCC--AG-AAA---AACATG-GGGAATTT--------------------------TTTTCCAT--C---TT-A-TCCGAA---AA-AGTCC-AG-AA-A-G-AA---CA-GTA---TT-ACAATGTAGT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--A-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGC-A-TGA-AGAA
gi|90656 : ctCCTGTT-CTA-GA-ATTAA-TTTATCCTCAG-AAA---A-CATG-GAAAATCT--------------------------TTT-CCAT--C---TT-G-TCCTAACCTAACTGTCC----AA-A-G-AA---CA-GTCCCTCT-G-------ATAAA-G-TCC-TTAACCA-CAAATAGCAGCTT--G-AAAACGAC-CCTGAGC-CATC-A-C-T-C--TG-GAACGTGG-A-AGA-
gi|90657 : TTT-C-A-GC-ATCAA-T--AATC--AG-ATATT-G-CATCTAGAA------------------------------TTT-CTATT-C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TT--TTGA-TG---------G-TTTTGA-AAAA-GA--CATAA-T-AGAC-A-CTT-CT-TG-AAACATGG-A-TG--AGAAaga
gi|90658 : AA-T--TTCC--AG-AAA---A-CATA-GGAAATCC--------------------------TTT-CCAT--T---AT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---AG-GTA---TT-A-------TC-AA-G-TTC-TGAA-CA-CAG--AACA-TTT--G-AAAA-GA--CATGG-C-AGCC-A-C-T-C
gi|90659 : AA---AA-TGTCT-A--AA-------------------TT-G-------GT-AA-G-TTC-TCAA-CT-CAA--AACA-TT--------A-GA-------------C-A-C-T-CT-TGAAAACATGG-A-TGA-AGA
gi|90660 : TAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGTT-A-C-T-CT-TG-AAATGTGG-A-AGA-AGAA
blockSeqs : TT C T T A T A TT TC A TAT A T TTTCCATCAGAGTTATATATGTCGTT T AT GCT T T CCT A A TG G A A AAA A CCT A CAATGTA A T T T C C AT G TG A C AT G G G C T A C A C T G
blockSeqs : AG . T . . . . T . . TT A . C . T . . . . C . G G . . . . . . . . . . T . G . . . A . C . . . . A . . . A . .
blockSeqs : A . . . . . . . . . TT A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : T . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
finalCons : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333 2 3 1 1 1 1 44 22 1 999 5 1 99999999999999999999999999 1 44 333 1 1 333 3 1 44 3 1 1 222 1 222 1 5555555 1 1 1 3 1 3 22 1 22 3 1 33 1 1 1 1 5 1 1 1 3 1 1
lowQualScore : ... . . . . . . .. .. . ... . . .......................... . .. ... . . ... . . .. . . . ... . ... . ....... . . . . . . .. . .. . . .. . . . . . . . . . . .
lowQualScore : 333 1 6 8 8 8 7 11 44 7 666 2 7 88888888888888888888888888 7 11 000 7 7 000 5 7 11 5 7 7 999 7 999 7 4444444 7 7 7 3 6 2 22 6 22 2 6 88 7 7 7 7 0 7 8 8 8 9 9
consensus : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
Reference ( family-697 ) : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90635 : ATTTTCA-T-G-ATCCTTTT-C-A-GA-ATCTA-T--ATCC--AG-AAA---A-CATG-GAAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TGAA-CA-CAA--AACA-TTT--G-AAAA-GG--CATGA-C-AGAC-A-C-T-CT-TG-AAACATGG-A-AGA-AGAA
gi|90636 : cATTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATGT--AG-AAA---A-CATG-GGAAGTCC--------------------------TTT-CCAT--C---TC-A-TCCGAA---AA-TGTTC-A--AA-A-G-AA---CA-GTA---TT-A-------GC-AA-G-TTC-TTGG-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCA-A-C-T-CT-TA-AAACATGG-A-TAA-AGAA
gi|90637 : cATTTGCA-T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCCAA--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TTAA-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AAAA
gi|90638 : cATTTGCA-TTG-ATCCCTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCCC-------------------------TTT-CCAT--C---TT-G-CCCGAA---AA-TATCC-A--AA-A-G-AA---CA-CTA---TT-A-------GT-AA-G-TTT-TT-A-CA-TAA--AACA-TTT--T-AAAA-TA--CATGG-T-AGCC-ACC-T-CT-TG-AAACATGGCA-TGA-AAAA
gi|90639 : cATTTTTA-A-G-ATCATTTT-C-A-GA-ATTAA-T--ATCT--AG-AAT---A-CACG-GAAAGTCC--------------------------T---CCAT--T---TT-G-TCCGAA---TA-TGTTC-A--AA-A-G-AA---AA-GTA---TT-A-------GA-AA-G-TTC-TTAC-CA-CAA--AACA-TTT--G-AAAA-GA--CACGA-C-AGCC-A-C-C-CT-TG-AAACATGG-A-TGA-AGAA
gi|90640 : cATTGCCA-T-G-ATCCTTTT-C-A-GA-ATTGA-T--ATGC--AG-GAA---A-CATG-GGAAATCC--------------------------TAT-CCAT--C---TT-G-TCTGAA---AA-TGTCC-A--AA-A-G-TT---TA-GTA---TT-A-------TT-AA-G-ATC-TTAA-CA-CAA--AACA-TTG--G-AAAA-GA--CATGA-C-AGCC-A-C-G-AT-TG-AAACATGG-A-TGA-AGAA
gi|90641 : cTTTCA-T-G-ATCCTTTTTC-A-GA-ATTGA-T--ATCC--AG-AAA---AACATG-GGAA-TCC--------------------------TTT-CCATATC---TT-G-TCCG-A---AA-TGTCC-A--AA-A-GAAA---CA-GTA---GT-A-------CT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-CGAGCC-A---T-TT-TG-AAACATCG-A-TGA-AGA
gi|90642 : cagTTTCA-T-G--TCCTTTT-C-AAGA-ATTAA-T---TCC---G-AAA---A-C-TG-GGAA-TCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---A--TGTCC-A--AA---G-AA---CA-GTA---TT-A-------CT-AATG-TTC-TTAA--A-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCC-T-T-T-CT-T--AAACATGG-A-TGA-AGAA
gi|90643 : cagTTTTCAAG-G-ATCCCTTT-T-A-GC-ATTAA-T--TACT--AG-AAAC--A-C-TG-GGCAGTCC--------------------------TTT-CCAT--C---TTTG-TCCGAT---AA-TGTCC-ATGAA-A-G-AA---TA-GTA---TT-A-------GT-AA-GTTTC-TTGA-CA-C-A--AACA-TTT--G-AAAG-GA--CATGA-C-AGCC-A-C-T-CTCTG-AAACATAG-ATTGA-AGAA
gi|90644 : cgATTTTCA-T-A-ATCCTTTT-C-A-GA-GTTGA-TT-ATCC--AG-AAA---AACATG-GTAAATCCTTTCCATCAGAGTTATATATGTCGTTTTC-CCAA--T---TT-G-TCCGAA---AAATGTCC-A--AA-AAG-AA---CAAGTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGCCGA-CTT-CT-TG--AAC-TGGAA-TGA-AGAA
gi|90645 : cATTTTCA-T-GCATCCTTT--C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-CGGAATCT--------------------------CTT-CCAT--C---TT-G-TCCGAA---AA-TGTC-----AA-A-A-AA---CA-A-G---TT-A-------G--AA-G-TCCTTTAA-TACCAA--AACA-TTT--GAAAAA-GA--CATGA-C-AG-T-A-CAT-CT-TG-AAA
gi|90646 : cTTTTCA-T---ATCCTTTT-C-A-GATATTAA-T--ATCC--AG-ATATATA-CATG-TAAAATCT--------------------------T----CAT--CGCTTT-G-TCCGAA---AA-TGT-C-A--AA-A-G-AA---AA-GTA---TTAA-------GT-AA-G-TCCTTTAA-CAGCAA--AAC--TTT--G-AAAA-GGATCATG
gi|90647 : catATTTTCA-A-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCT--A--AAA---A-CATG-GGAAGTCA--------------------------TTT-CCAT--C---TT-G-
gi|90648 : c-G-AA---CA-GTA---TT-A-------GT-AA-G-TTC-TTAA-CA-TAA--AACT-TTT--G-TAAA-TA--TATGG-C-AGAC-T-C-T-CT-TG-AAACATGG-A-TGA-AGA
gi|90649 : cgtttacaaaatcattttcagtaagaaaaaaatatctagaaaatgcagagaagtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTC--T-G-ATCCTTTT-C-A-GA-ATTAA-T--ATCC--AG-AAA---A-CATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---TT-TTA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AACA-CTT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGG-A-TGA-AGAA
gi|90650 : ATTTTCA-T-T--TCCTTTT-C-A-GA-ATTAT-T--ATCC--AG-AAT-----CATG-GGAAATCC--------------------------CTT--CAT--C---TT-GTTCCGAA---AA-TGTCC-A--AA-A-G-AA---CA-ATA---TT-A-------GT-AA-G-TTC-TTAA-CA-CAA--AATA--TT--G-AAAA-GA--CATGA-C-AGCC-A-C-T-
gi|90651 : TTTTCA-A-G-ATCCTATT-C-A-GA-ATTAA-T--ATCT--AGAAAA---A-CACG-GGAAAT-C--------------------------TTT-CCAT--C---TT-G-TTCGAA---AA-TGTCT-A--CA-A-G-AA---CA-GTA---TT-A-------GT--A-G-TTC-TTAA-CA-CAA--AACA-TTT--G-AATA-GA--CACGG-C-AGCC-A-C-TAAT-TG-AAACATGG-A-TGAGAGA
gi|90652 : TTTT-C-A-GC-ATCA--T--AATC--AG-ATATT-A-CATC-TAGAAT----------------------------TTT-CTAT--C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TTC-TTGA-T--------GGT-TTT--G-AAAA-GA--CATAA-T-AGAC-A-C-T-CT-TG-AAACATGG-A-TG--AGAA
gi|90653 : TTTCA-T-G-ATCCTTTTTC-A-GA-ATTAAAT--ATCC--AG-AAA---A-GATG-GGAAATCC--------------------------TTT-CCAT--C---TT-G-TCCAAA---AA---------------G-AA---CA-GTA---TT-A-------GT-AA-G-TCC-TTAA-CA-CAA--AACA-TTT--GAAAAA-GA--CATGA-C-AGCC-A-T-C-TT-TG-AAACATGG-A-AGA-AGAA
gi|90654 : TTCA-A-G-ATCGTTTT-C-A-GA-AATGC-T--ATCT--AG-AAA---A-CAAA-AGAAAATA--------------------------TTT-C-AT--C---TT-G-CTTGAA---AT-TATAT-A--AA-A-A-AAAAACA-GTA---GT-A-------GT-AA-G-TTC-ATAA-CA-TAA--AACA-TTT--G-AAAA-GA--TATGA-C-AGAC-A-C-T-CT-TG-CAACATGG-A-TGA-AGA
gi|90655 : TTTTCA-T-G-ATCCTT-------------------ATCC--AG-AAA---AACATG-GGGAATTT--------------------------TTTTCCAT--C---TT-A-TCCGAA---AA-AGTCC-AG-AA-A-G-AA---CA-GTA---TT-ACAATGTAGT-AA-G-TTC-TTAA-CA-CAA--AACA-TTT--A-AAAA-GA--CATGA-C-AGCC-A-C-T-CT-TG-AAACATGC-A-TGA-AGAA
gi|90656 : ctCCTGTT-CTA-GA-ATTAA-TTTATCCTCAG-AAA---A-CATG-GAAAATCT--------------------------TTT-CCAT--C---TT-G-TCCTAACCTAACTGTCC----AA-A-G-AA---CA-GTCCCTCT-G-------ATAAA-G-TCC-TTAACCA-CAAATAGCAGCTT--G-AAAACGAC-CCTGAGC-CATC-A-C-T-C--TG-GAACGTGG-A-AGA-
gi|90657 : TTT-C-A-GC-ATCAA-T--AATC--AG-ATATT-G-CATCTAGAA------------------------------TTT-CTATT-C---AT-G-CCCGAA---AA-TGCCC-A--AAGA-G-AA---TA-GTA---TA-A-------GT-GA-G-TT--TTGA-TG---------G-TTTTGA-AAAA-GA--CATAA-T-AGAC-A-CTT-CT-TG-AAACATGG-A-TG--AGAAaga
gi|90658 : AA-T--TTCC--AG-AAA---A-CATA-GGAAATCC--------------------------TTT-CCAT--T---AT-G-TCCGAA---AA-TGTCC-A--AA-A-G-AA---AG-GTA---TT-A-------TC-AA-G-TTC-TGAA-CA-CAG--AACA-TTT--G-AAAA-GA--CATGG-C-AGCC-A-C-T-C
gi|90659 : AA---AA-TGTCT-A--AA-------------------TT-G-------GT-AA-G-TTC-TCAA-CT-CAA--AACA-TT--------A-GA-------------C-A-C-T-CT-TGAAAACATGG-A-TGA-AGA
gi|90660 : TAA-CA-CAA--AACA-TTT--G-AAAA-GA--CATGA-C-AGTT-A-C-T-CT-TG-AAATGTGG-A-AGA-AGAA