lowQualScore                  :                                2222222222   1111111                                                            
lowQualScore                  :    4       1  1 4  1     1   3 5555555555 1 0000000 1   1  3  44444  1 1  1   1   1 1  33   1    333           
lowQualScore                  :    .       .  . .  .     .   . .......... . ....... .   .  .  .....  . .  .   .   . .  ..   .    ...           
lowQualScore                  :    4       7  6 8  6     6   2 7777777777 6 4444444 6   6  2  33333  7 7  7   7   7 7  22   7    000           
consensus                     :   ATTATACAA-TT-A-TT-GAATT-CTG-A-T-GAG----G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
Reference ( gi|90906 )        :   ACTATACAA-TT-A-TT-GAATT-CTG-A-T-GAA----G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90907                      :   ATTATACAA-TT-A-TT-GACTT-CTG-A-T-GAG----G-T-------T-TAC-CT-CT-----TG-A-TT-TAT-CAA-C-CT-GGGG-AATG---TGATATTCACC
gi|90908                      :   ATTATACAA-TT-A-TT-GAATT-CTG-ATT-GAG----G-T-------T-GAC-CT-CT-----TGAA-TT-TAT-CGA-C-CC-GGGGAAATG---TGATATTCACC
gi|90914                      :   ACTATACAA-TTTA-TT-GACTT-CTG-A-T-GAG----G-T-------TCAAC-CT-CT-----TG-A-TT-TAT-CAA-CTCC-GGGG-AATG---TGATATTCACC
gi|90911                      :   ATTATACAA-TT-ACTT-GAATT-CTGCA-T-GAG----G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90910                      :   ATTATACAA-TT-ACTT-GAATT-CTGCA-T-GAG----G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90909                      :   ATTATACAAATT-A-TT-GAATT-CTG-A-T-G------G-T-------T-GAC-CT-CT-----TG-ATTT-TAT-CGA-C-CC--GGG-AATG---TGATATTCACC
gi|90915                      :   ATTATACAA-TT-A-TT-GACTT-CTG-A-C-GTG----G-C-------T-GAT-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATAGTCA
gi|90917                      :   ATTATACAA-GT-A-TT-GCATT-ATG-A-G-GAG----G-T-------T-GAG-CT-CT-----TG-G-TT-TTT-CAA-C-CC-AGGG-TATG---CGATATTTACC
gi|90913                      :   ATTATACAA-TT-A-TT-GAATT-CTG-A-T-GAG----G-T-------T-GAC-CT-C
gi|90912                      :   ATTATACAA-TT-A-TT-GAATT-CTG-A-T-GAG----G-T-------T-GAC-CT-C
gi|90919                      :     TATACAA-TT-A-TT-GAATT-CTG-A-T-GAG----G-T-------T-GAC-CT-AT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90920                      :     TATACAA-TT-A-TT-GACTT-CTG-A-T-GAG----G-T-------T-GAC-CT-CT-----GC-A--C-TAT-CAA-C-CC-GGGG-AATAAATTGATATTC
gi|90921                      :     TAAACAG-TT-A-C---GACT-CTG-A-A-TCG----G-T-------T-GATTCT-CT-----TG-A-TT-TAT-CAA-C-CCAGGGA-AATG---TG--ATTCACC
gi|90922                      :     TATACAA-TT-A-TT-GACTT-TTG-A-T-GAA----G-C-------T-GAC------------A-G-TT-TAT-TCA-C-CC-AGGG-A-------GATATT
gi|90916                      :      ATACAA-TT-A-TTTGAATTTCTG-A-TTGAG----G-T-------T-GAC-CTTCT-----TG-A-TT--AT-CAAAC-CT-GGGG-AATG---TGATATTCACC
gi|90923                      :   ataATACAA-TT-A-TT-GACTT-CAG-A-T-GAG----GGT-------T-GAC-CTGCTGATCATG-A-TT-T-T-CAA-C-CA-AGGG-AATG---TGATATT-ACC
gi|90918                      :        ACAA-TT-A-TT-GAATT-CTG-A----AATCG-G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90928                      : ttataaaACAA-TT-A-TT-GAATT-CTG-A----AATCG-G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90929                      :        ACAA-TT-A-TT-GAATT-------T-GAAATCGG-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90924                      :        ACAA-TT-A-TT-GGATT-CTG-A----AATCG-G-T-------T-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TGATATTCACC
gi|90927                      :        ACAA-TT-A-TT-GAATT-CTG-A----AA----G-TCGGGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90926                      :        ACAA-TT-A-TT-GAATT-CTG-A----AA----G-TCGGGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90925                      :        ACAA-TT-AATT-CAATT-CTG-A----AATCG-G-T-------T--AC-CT-CT-----TG-A-TT--AT-CAA-C-CC-GGGG-AATG---T-ATATTCACC
gi|90930                      :           A-TT-A-TT-GACTT-CTG-A----AATCG-G-T-------T-GAC-CT-CT-----TG-A--T-TAT-CAG-A-CC-AGGG-AATG---TAGTATT
gi|90931                      :              T-A-TT-GAATT-CTT-T-A-GAAATCGG-T-------T-GAC-CT-CT------G-A-TTCTATACAA-C-CC-GGG--AATG---TGAT-TTAACC





Alignments
lowQualScore                  :                                    222222222                                                                 
lowQualScore                  :       222   1  1 4  1     1  222 3 444444444  44  1   1  3  44444  1 1  1   1   1 1  44   1    222           
lowQualScore                  :       ...   .  . .  .     .  ... . .........  ..  .   .  .  .....  . .  .   .   . .  ..   .    ...           
lowQualScore                  :       999   6  5 6  5     5  777 1 777777777  22  5   5  1  22222  7 7  7   7   7 7  88   7    999           
consensus                     : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
Reference ( family-684 )      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90906                      : ACTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--AG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90907                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-TAC-CT-CT-----TG-A-TT-TAT-CAA-C-CT-GGGG-AATG---TGATATTCACC
gi|90908                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-AT--T-GA--GG--TT-GAC-CT-CT-----TGAA-TT-TAT-CGA-C-CC-GGGGAAATG---TGATATTCACC
gi|90909                      : ATTATA---CAAATT-A-TT-GAATT-CT---G-A---T-G----G--TT-GAC-CT-CT-----TG-ATTT-TAT-CGA-C-CC--GGG-AATG---TGATATTCACC
gi|90910                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90911                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90912                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90913                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90914                      : ACTATA---CAA-TTTA-TT-GACTT-CT---G-A---T-GA--GG--TTCAAC-CT-CT-----TG-A-TT-TAT-CAA-CTCC-GGGG-AATG---TGATATTCACC
gi|90915                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---C-GT--GG--CT-GAT-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATAGTCA
gi|90916                      : ATAATA---CAA-TT-A-TTTGAATTTCT---G-A---TTGA--GG--TT-GAC-CTTCT-----TG-A-TT--AT-CAAAC-CT-GGGG-AATG---TGATATTCACC
gi|90917                      : ATTATA---CAA-GT-A-TT-GCATT-AT---G-A---G-GA--GG--TT-GAG-CT-CT-----TG-G-TT-TTT-CAA-C-CC-AGGG-TATG---CGATATTTACC
gi|90918                      :  TTATAAAACAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90919                      :   TATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-AT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90920                      :   TATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----GC-A--C-TAT-CAA-C-CC-GGGG-AATAAATTGATATTC
gi|90921                      :   TAAA---CAG-TT-A-C---GACT-CT---G-A---A-TC--GG--TT-GATTCT-CT-----TG-A-TT-TAT-CAA-C-CCAGGGA-AATG---TG--ATTCACC
gi|90922                      :   TATA---CAA-TT-A-TT-GACTT-TT---G-A---T-GA--AG--CT-GAC------------A-G-TT-TAT-TCA-C-CC-AGGG-A-------GATATT
gi|90923                      :    ATA---CAA-TT-A-TT-GACTT-CA---G-A---T-GAG-GG--TT-GAC-CTGCTGATCATG-A-TT-T-T-CAA-C-CA-AGGG-AATG---TGATATT-ACC
gi|90924                      :      A---CAA-TT-A-TT-GGATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TGATATTCACC
gi|90925                      :      A---CAA-TT-AATT-CAATT-CT---G-A-----AATCGG--TT--AC-CT-CT-----TG-A-TT--AT-CAA-C-CC-GGGG-AATG---T-ATATTCACC
gi|90926                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90927                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90928                      :      A---CAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90929                      :      A---CAA-TT-A-TT-GAATT--T---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90930                      :            A-TT-A-TT-GACTT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A--T-TAT-CAG-A-CC-AGGG-AATG---TAGTATT
gi|90931                      :               T-A-TT-GAATT-CTTTAG-A-----AATCGG--TT-GAC-CT-C------TG-A-TTCTATACAA-C-CC--GGG-AATG---TGAT-TTAACC





Alignments
lowQualScore                  :                                    222222222                                                                 
lowQualScore                  :       222   1  1 4  1     1  222 3 444444444  44  1   1  3  44444  1 1  1   1   1 1  44   1    222           
lowQualScore                  :       ...   .  . .  .     .  ... . .........  ..  .   .  .  .....  . .  .   .   . .  ..   .    ...           
lowQualScore                  :       999   6  5 6  5     5  777 1 777777777  22  5   5  1  22222  7 7  7   7   7 7  88   7    999           
consensus                     : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
Reference ( family-684 )      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90906                      : ACTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--AG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90907                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-TAC-CT-CT-----TG-A-TT-TAT-CAA-C-CT-GGGG-AATG---TGATATTCACC
gi|90908                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-AT--T-GA--GG--TT-GAC-CT-CT-----TGAA-TT-TAT-CGA-C-CC-GGGGAAATG---TGATATTCACC
gi|90909                      : ATTATA---CAAATT-A-TT-GAATT-CT---G-A---T-G----G--TT-GAC-CT-CT-----TG-ATTT-TAT-CGA-C-CC--GGG-AATG---TGATATTCACC
gi|90910                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90911                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90912                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90913                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90914                      : ACTATA---CAA-TTTA-TT-GACTT-CT---G-A---T-GA--GG--TTCAAC-CT-CT-----TG-A-TT-TAT-CAA-CTCC-GGGG-AATG---TGATATTCACC
gi|90915                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---C-GT--GG--CT-GAT-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATAGTCA
gi|90916                      : ATAATA---CAA-TT-A-TTTGAATTTCT---G-A---TTGA--GG--TT-GAC-CTTCT-----TG-A-TT--AT-CAAAC-CT-GGGG-AATG---TGATATTCACC
gi|90917                      : ATTATA---CAA-GT-A-TT-GCATT-AT---G-A---G-GA--GG--TT-GAG-CT-CT-----TG-G-TT-TTT-CAA-C-CC-AGGG-TATG---CGATATTTACC
gi|90918                      :  TTATAAAACAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90919                      :   TATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-AT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90920                      :   TATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----GC-A--C-TAT-CAA-C-CC-GGGG-AATAAATTGATATTC
gi|90921                      :   TAAA---CAG-TT-A-C---GACT-CT---G-A---A-TC--GG--TT-GATTCT-CT-----TG-A-TT-TAT-CAA-C-CCAGGGA-AATG---TG--ATTCACC
gi|90922                      :   TATA---CAA-TT-A-TT-GACTT-TT---G-A---T-GA--AG--CT-GAC------------A-G-TT-TAT-TCA-C-CC-AGGG-A-------GATATT
gi|90923                      :    ATA---CAA-TT-A-TT-GACTT-CA---G-A---T-GAG-GG--TT-GAC-CTGCTGATCATG-A-TT-T-T-CAA-C-CA-AGGG-AATG---TGATATT-ACC
gi|90924                      :      A---CAA-TT-A-TT-GGATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TGATATTCACC
gi|90925                      :      A---CAA-TT-AATT-CAATT-CT---G-A-----AATCGG--TT--AC-CT-CT-----TG-A-TT--AT-CAA-C-CC-GGGG-AATG---T-ATATTCACC
gi|90926                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90927                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90928                      :      A---CAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90929                      :      A---CAA-TT-A-TT-GAATT--T---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90930                      :            A-TT-A-TT-GACTT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A--T-TAT-CAG-A-CC-AGGG-AATG---TAGTATT
gi|90931                      :               T-A-TT-GAATT-CTTTAG-A-----AATCGG--TT-GAC-CT-C------TG-A-TTCTATACAA-C-CC--GGG-AATG---TGAT-TTAACC


blockSeqs                     :       AAA   A  T C  T     T  TTA C AAGTCG     CT  C   T  T  GATCA  A T  C   A   A T  AG   A    AAT
blockSeqs                     :       .     .  . C  .     .  .   C AAGTCG     CT  .   .  G  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . A  .     .  .   . TTGA       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TTGA       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGAG       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  A    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  A    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . AATC       .   .   .  .  .      . .  .   .   . .  A    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  G    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  A    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . CGT        .   .   .  .  .      . .  .   .   . .  .    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . GGA        .   .   .  .  .      . .  .   .   . .  .    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  .    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . TGA        .   .   .  .  .      . .  .   .   . .  .    .    .  
blockSeqs                     :       .     .  . .  .     .  .   . ATC        .   .   .  .  .      . .  .   .   . .  .    .    .  
blockSeqs                     :             .  . .  .     .  .   . TGA        .   .   .  .                                        
blockSeqs                     :                . .  .     .  .   . TG         .   .   .  .                                        


blockSeqCons                  : 
originalCons                  : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
finalCons                     : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC





Alignments
lowQualScore                  :                                    222222222                                                                 
lowQualScore                  :       222   1  1 4  1     1  222 3 444444444  44  1   1  3  44444  1 1  1   1   1 1  44   1    222           
lowQualScore                  :       ...   .  . .  .     .  ... . .........  ..  .   .  .  .....  . .  .   .   . .  ..   .    ...           
lowQualScore                  :       999   6  5 6  5     5  777 1 777777777  22  5   5  1  22222  7 7  7   7   7 7  88   7    999           
consensus                     : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
Reference ( family-684 )      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90906                      : ACTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--AG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90907                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-TAC-CT-CT-----TG-A-TT-TAT-CAA-C-CT-GGGG-AATG---TGATATTCACC
gi|90908                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-AT--T-GA--GG--TT-GAC-CT-CT-----TGAA-TT-TAT-CGA-C-CC-GGGGAAATG---TGATATTCACC
gi|90909                      : ATTATA---CAAATT-A-TT-GAATT-CT---G-A---T-G----G--TT-GAC-CT-CT-----TG-ATTT-TAT-CGA-C-CC--GGG-AATG---TGATATTCACC
gi|90910                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90911                      : ATTATA---CAA-TT-ACTT-GAATT-CT---GCA---T-GA--GG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TAATATTCACC
gi|90912                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90913                      : ATTATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-C
gi|90914                      : ACTATA---CAA-TTTA-TT-GACTT-CT---G-A---T-GA--GG--TTCAAC-CT-CT-----TG-A-TT-TAT-CAA-CTCC-GGGG-AATG---TGATATTCACC
gi|90915                      : ATTATA---CAA-TT-A-TT-GACTT-CT---G-A---C-GT--GG--CT-GAT-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATAGTCA
gi|90916                      : ATAATA---CAA-TT-A-TTTGAATTTCT---G-A---TTGA--GG--TT-GAC-CTTCT-----TG-A-TT--AT-CAAAC-CT-GGGG-AATG---TGATATTCACC
gi|90917                      : ATTATA---CAA-GT-A-TT-GCATT-AT---G-A---G-GA--GG--TT-GAG-CT-CT-----TG-G-TT-TTT-CAA-C-CC-AGGG-TATG---CGATATTTACC
gi|90918                      :  TTATAAAACAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90919                      :   TATA---CAA-TT-A-TT-GAATT-CT---G-A---T-GA--GG--TT-GAC-CT-AT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90920                      :   TATA---CAA-TT-A-TT-GACTT-CT---G-A---T-GA--GG--TT-GAC-CT-CT-----GC-A--C-TAT-CAA-C-CC-GGGG-AATAAATTGATATTC
gi|90921                      :   TAAA---CAG-TT-A-C---GACT-CT---G-A---A-TC--GG--TT-GATTCT-CT-----TG-A-TT-TAT-CAA-C-CCAGGGA-AATG---TG--ATTCACC
gi|90922                      :   TATA---CAA-TT-A-TT-GACTT-TT---G-A---T-GA--AG--CT-GAC------------A-G-TT-TAT-TCA-C-CC-AGGG-A-------GATATT
gi|90923                      :    ATA---CAA-TT-A-TT-GACTT-CA---G-A---T-GAG-GG--TT-GAC-CTGCTGATCATG-A-TT-T-T-CAA-C-CA-AGGG-AATG---TGATATT-ACC
gi|90924                      :      A---CAA-TT-A-TT-GGATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC--GGG-AATG---TGATATTCACC
gi|90925                      :      A---CAA-TT-AATT-CAATT-CT---G-A-----AATCGG--TT--AC-CT-CT-----TG-A-TT--AT-CAA-C-CC-GGGG-AATG---T-ATATTCACC
gi|90926                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90927                      :      A---CAA-TT-A-TT-GAATT-CT---G-AAAGT-CG--GGCTTT-GAC-CT-CT-----TG-A-TT-TAT-CAG-A-CC-GGGG-AATG---TGATATTCAC
gi|90928                      :      A---CAA-TT-A-TT-GAATT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90929                      :      A---CAA-TT-A-TT-GAATT--T---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A-TT-TAT-CAA-C-CC-GGGG-AATG---TGATATTCACC
gi|90930                      :            A-TT-A-TT-GACTT-CT---G-A-----AATCGG--TT-GAC-CT-CT-----TG-A--T-TAT-CAG-A-CC-AGGG-AATG---TAGTATT
gi|90931                      :               T-A-TT-GAATT-CTTTAG-A-----AATCGG--TT-GAC-CT-C------TG-A-TTCTATACAA-C-CC--GGG-AATG---TGAT-TTAACC