lowQualScore : 1 22 9999 33 1 88 6 3 1 1 1 33 3 1 3 1 33 22 8 444 33 444 8 1 1 2
lowQualScore : . .. .... .. . .. . . . . . .. . . . . .. .. . ... .. ... . . . .
lowQualScore : 7 22 4444 88 6 44 4 1 5 5 5 77 1 5 1 5 44 22 0 444 88 444 0 6 7 0
consensus : CAATAT-GTATTTTA--TTCTC---TACT--C-TCA-CTAC-AAAAA-C-A-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A--G---ACCCCAAG-AATTATA-CC-GCGCC
Reference ( gi|108783 ) : CAATAT-GTATTTTA--TTCTT---TACT--C-TCA-TTAC-AAAAA-C-A-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCTCC---A--G---ACCCTAAG-AATTATA-CC-GCGCC
gi|108784 : CAATAT-GTATTTCA--TTCTC---TAAT--C-TCA-CTAC-AAAA--C-A-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A--G---ACCCCAAG-AATTATA-
gi|108785 : CAATCT-GTATTTTA--TTCTC---TACT--C-TCA-CTAC-AAAAA-C-A-TAGGAT-A--T-GTGTAAAGAGGGC-A-T-AAAACAA--TCCCC---A--G---ACCACACG-GCTTATA-CC-GCGCC
gi|108786 : CAATAT-GTATTTTA--TTCTC---CACC--C-TCA-CTAC-AAAAA-C-A-TAGGGT-A--T-GTGTACAG-GGGC-A-TCGACACTA--TCCCC---A--G---ACCTCAAG-ATTTATA-CC-GC
gi|108789 : CAATAT-GTATTTTA--TC------TACT--C-GCA-CTAC-AAAAA-C-A-TAGGGT-A--T-GTATAAAG-GAGC-A-TCAAACCAA--TACCC---A--G---ACCCCAAC-AATTATA-TC-GCACC
gi|108787 : CAATAT-GTATTTTA--TTCTC---TACA--C-TCA-CTAC-AAAAA---A-TATGGT-A--T-GTGTAAGG-GGG--A-TCAAAACAA--TCACC---A--G---ACCCCAGG-AATTATA-CC-
gi|108791 : CAATAT-GTATTTTA--TTCTA---TACT--C-GCA-CTAC-AAAAA-C-A-TAGGGT-A--T-GTGTAACG-GAGC-A-TTA----AA--TTCCC---A--G---AACACAAG-AATTATA-CC-ACGCC
gi|108790 : CAATAT-GTATTTTA--TTTTC---TACT--C-TCA-CTAC-ATAAA-C-A-TAAGGA-A--T-GTGTAAAC-GAGC-A-TCAAACCAA--TACCC---A--G---ACCCCAAG-AATTATA-C
gi|108794 : CAATAT-GTATTTCA--TTCTC---TAAT--CCTCA-CTAC-AAAAA-C-A-TAGG-T-A--T-GT-TAAAG-GG-C-A-TCAAAACAA--TCCCC---A--G---ACCC-AAG-AATTATA-CC--CGC
gi|108793 : CAATAT-GTATTTTA--TTATC---TACC--C-TCA-CTAC-AAAAA-C-T-TAGGGA-A--T-GTGTAAAG-GGGC-A-TAAAAACAA----TCC---ATTG---ACCCCAAG-AAGTATA-CC-
gi|108788 : CAATAT-GTATTTTA--TTCCT----ACA--C-TCA-CTAC-AAAAA-T-A-T--GGT-A--T-GTGTAAAG-GGGG-A-TCAAAACAA--TCACCA--A--G---ACCC-AGG-AATTATAGCT-GCCCC
gi|108796 : CAATAT-GTATTT-A--TTCTC---TACT--C-TCA-CTAG-AAAAA-C-A-TGGAGT-A--T-GTGTAAAG-GGGT-C-TC-AAACAA--TC-CC---A--G---ACTCCAAG-AA
gi|108795 : CAATAT-GTATTTTA--A--------ACT--C-T-----AC-AAAAA-AGA-TAGGGC-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TACCCAAAA--G---ATCACACG-AATTATA-CC-GCGCC
gi|108797 : CAATAT-GTATTT-------------ACT--C-TCA-CTACAAAAAA-C-A-TAGGGT-A--TGGTGTAAAG-GGGC-A-TT-AAACAA---CCCC---A--G---ATC---AC-AAATATA-CT-GCCCC
gi|108798 : CAA-AT-GTATTTTA--TTCTTC--TACTT-C-TCA-CTACCAAAAA-C-A-T-GGGTAA--T-GTGTGAAG-TGAC-CTTCAAAACAA--T-GCC---A--G---ACCACAAA-TTTTATA-CC-GCACC
gi|108792 : CAATATTGTATTTTA--TTCTC---TAC---C-TCA-CTAC-AAAAATC-A-TAGGTT-A--TGGTGTAACG-GAGC-A-T-----TAA--TTCCC---A--G---AAAC-AAG-AATTATA-CC-AC
gi|108799 : CAATGT-GTATTTTA--TTCTC---TTCC--C-TCA-CTAC-AAAA--C-A-TAGAGT-A--T-GTGTAAAG-AGAC-A-TAAAAAC
gi|108801 : CAATAT-GTATTTTA--TTCAT---AGCT--G-TCACCTAC-AAAAA-C---TCCCGT-A--T-GTGT-AAG-CGGCAA-TAAAAACAA---CCAC---A--GATCACCGT-AG-ATATATA-CC-GCGCC
gi|108800 : CAATAT-GTATTTTAACTCCTA---T-CTGCC-TCA-CAAC-ACAAA-C-AATAGGGT-A--T-GTGTAA---GGGCTA-T--AGACAATTTCCCC---A--GA--ACTCCAAG-ACTTATA-
gi|108802 : AATAT-GTATTTCA--TTCTC---TAAT--C-TCA-CTAC--AAAA-C-A-TAGGGT-A----GTGTAAAG-GGGC-A-TC-AAACAA--TCCCC---A--G---ACCCCAAG-AATTATA-
gi|108803 : AATAT-GTATTTTA--TTCTT---TAGT--C-TCA-CTAC-AAAAA-C-A----------------TAAAG-GGGC---TTAAAACAA--TCCCC---A--G---ACCATAAT-AATTACA-CC-GCACC
gi|108804 : TAT-GTATTTTA--TTCTC---TACT--C-TCA-TCAT-AAAAATC-A-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A--G---ACCCTAAG-AATTATT-CC-GCGCC
gi|108805 : TAT-GTATTTTA--TTCTC---TATT--C-TCA-CCCCCAAAAA-C-A-TAGGTT-A--T-GTGTAAAG-GGGC-A-T-AAAACAA--TCCCC---AG-G---ACCCCAAG-AATTATA-CC-GCGCC
gi|108806 : AT-GTATTTTA--TTCTC---TACT--C-TCA-CGAC-AAAAA-C-A-TAGGGT-ACAT-GTATAAAG-GGGC-A-TCAGAACAA--TCCCC---A--G---ACCTCAAG-ATTTATA-CT-GCGTC
gi|108807 : ATTTTA--TCATTATCTACT--C-TCACTTACCAAAAA-C-A-TAGGGT-AT-T-GTGT--TT-GGGC-A-TC-AACCAA--TCCCC---A--G---ACCCCAGGCAATCATA-CTAGCGC
gi|108808 : A--TTCTC---AACT--C-TTA-CTAC-AGAAA---A-TACGGT-A--T-GTGTT--G-GGGC-A-TCAAAACAA--TCCCC---A--G---ACCCCATG-AATTATA-CC-GCGCC
gi|108809 : A-C-A-TGGGGT-A--T-GTG-AAAG-GGAT-A-TCAAAACAA--TCCCC---A--G---ACCCTAAG-AATTATA-CC-
Alignments
lowQualScore : 1 22 222 33 11 1 1 1 6 3 1 1 22 4 1 3 1 2 22 222 1 1 1 1 1 1 1
lowQualScore : . .. ... .. .. . . . . . . . .. . . . . . .. ... . . . . . . .
lowQualScore : 7 11 777 77 99 5 5 5 2 0 5 5 00 4 5 0 5 0 11 777 5 5 5 5 5 6 9
consensus : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
Reference ( family-677 ) : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108783 : CAATAT-GTATTTTA--T---TCT--TTACT-C-TCA-TT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCTCC---A-G-ACC-CTA-AG-AATTATA-CC-GCGCC
gi|108784 : CAATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC-AAAA--CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108785 : CAATCT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGAT-A--T-GTGTAAAGAGGGC-A-T-AAAACAA--TCCCC---A-G-ACC-ACA-CG-GCTTATA-CC-GCGCC
gi|108786 : CAATAT-GTATTTTA--T---TCT--CCACC-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTACAG-GGGC-A-TCGACACTA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CC-GC
gi|108787 : CAATAT-GTATTTTA--T---TCT--CTACA-C-TCA-CT-AC-AAAAA--A-TATGGT-A--T-GTGTAAGG-GGG--A-TCAAAACAA--TCACC---A-G-ACC-CCA-GG-AATTATA-CC-
gi|108788 : CAATAT-GTATTTTA--T---TC---CTACA-C-TCA-CT-AC-AAAAA-TA-T--GGT-A--T-GTGTAAAG-GGGG-A-TCAAAACAA--TCACC---A-A-GAC-CCA-GG-AATTATAGCT-GCCCC
gi|108789 : CAATAT-GTATTTTA--T--------CTACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTATAAAG-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AC-AATTATA-TC-GCACC
gi|108790 : CAATAT-GTATTTTA--T---TTT--CTACT-C-TCA-CT-AC-ATAAA-CA-TAAGGA-A--T-GTGTAAAC-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AG-AATTATA-C
gi|108791 : CAATAT-GTATTTTA--T---TCT--ATACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAACG-GAGC-A-TTA----AA--TTCCC---A-G-AAC-ACA-AG-AATTATA-CC-ACGCC
gi|108792 : CAATATTGTATTTTA--T---TCT--CTAC--C-TCA-CT-AC-AAAAATCA-TAGGTT-A--TGGTGTAACG-GAGC-A-T-----TAA--TTCCC---A-G-A-A-ACA-AG-AATTATA-CC-AC
gi|108793 : CAATAT-GTATTTTA--T---TAT--CTACC-C-TCA-CT-AC-AAAAA-CT-TAGGGA-A--T-GTGTAAAG-GGGC-A-TAAAAACAA--TCCAT---T-G-ACC-CCA-AG-AAGTATA-CC-
gi|108794 : CAATAT-GTATTTCA--T---TCT--CTAAT-CCTCA-CT-AC-AAAAA-CA-TAGG-T-A--T-GT-TAAAG-GG-C-A-TCAAAACAA--TCCCC---A-G-A-C-CCA-AG-AATTATA-CC--CGC
gi|108795 : CAATAT-GTATTTTA--A---ACT--CTAC-----------A--AAAAA-GA-TAGGGC-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TACCCAAAA-G-ATC-ACA-CG-AATTATA-CC-GCGCC
gi|108796 : CAATAT-GTATTT-A--T---TCT--CTACT-C-TCA-CT-AG-AAAAA-CA-TGGAGT-A--T-GTGTAAAG-GGGT-C-TC-AAACAA--T-CCC---A-G-ACT-CCA-AG-AA
gi|108797 : CAATAT-GTATTT---------------ACT-C-TCA-CT-ACAAAAAA-CA-TAGGGT-A--TGGTGTAAAG-GGGC-A-TT-AAACAA---CCCC---A-G-ATC-ACA-AA----TATA-CT-GCCCC
gi|108798 : CAA-AT-GTATTTTA--T---TCTT-CTACTTC-TCA-CT-ACCAAAAA-CA-T-GGGTAA--T-GTGTGAAG-TGAC-CTTCAAAACAA--T-GCC---A-G-ACC-ACA-AA-TTTTATA-CC-GCACC
gi|108799 : CAATGT-GTATTTTA--T---TCT--CTTCC-C-TCA-CT-AC--AAAA-CA-TAGAGT-A--T-GTGTAAAG-AGAC-A-TAAAAAC
gi|108800 : CAATAT-GTATTTTAACT---CCTATCTGC--C-TCA-CA-AC-ACAAA-CAATAGGGT-A--T-GTGTAA---GGGCTA-T--AGACAATTTCCCC---A-GAACT-CCA-AG-ACTTATA-
gi|108801 : CAATAT-GTATTTTA--T---TCA--TAGCT-G-TCACCT-AC-AAAAA-C--TCCCGT-A--T-GTGT-AAG-CGGCAA-TAAAAACAA---CCAC---A-G-ATCACCGTAG-ATATATA-CC-GCGCC
gi|108802 : AATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC--AAAA-CA-TAGGGT-A----GTGTAAAG-GGGC-A-TC-AAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108803 : AATAT-GTATTTTA--T---TCT--TTAGT-C-TCA-CT-AC-AAAAA-CA----------------TAAAG-GGGC---TTAAAACAA--TCCCC---A-G-ACC-ATA-AT-AATTACA-CC-GCACC
gi|108804 : TAT-GTATTTTA--T---TCT--CTACT-C-TCA-TC-AT-AAAAATCA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATT-CC-GCGCC
gi|108805 : TAT-GTATTTTA--T---TCT--CTATT-C-TCA-CC-CCCAAAAA-CA-TAGGTT-A--T-GTGTAAAG-GGGC-A-T-AAAACAA--TCCCC---AGG-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108806 : AT-GTATTTTA--T---TCT--CTACT-C-TCA-CG-AC-AAAAA-CA-TAGGGT-ACAT-GTATAAAG-GGGC-A-TCAGAACAA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CT-GCGTC
gi|108807 : ATTTTA--TCATTAT--CTACT-C-TCA-CTTACCAAAAA-CA-TAGGGT-A--TTGTGTT--T-GGGC-A-TCAAC-CAA--TCCCC---A-G-ACC-CCA-GGCAATCATA-CTAGCGC
gi|108808 : A--T---TCT--CAACT-C-TTA-CT-AC-AGAAA--A-TACGGT-A--T-GTGTT--G-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-TG-AATTATA-CC-GCGCC
gi|108809 : A-CA-TGGGGT-A--T-GTG-AAAG-GGAT-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATA-CC-
Alignments
lowQualScore : 1 22 222 33 11 1 1 1 6 3 1 1 22 4 1 3 1 2 22 222 1 1 1 1 1 1 1
lowQualScore : . .. ... .. .. . . . . . . . .. . . . . . .. ... . . . . . . .
lowQualScore : 7 11 777 77 99 5 5 5 2 0 5 5 00 4 5 0 5 0 11 777 5 5 5 5 5 6 9
consensus : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
Reference ( family-677 ) : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108783 : CAATAT-GTATTTTA--T---TCT--TTACT-C-TCA-TT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCTCC---A-G-ACC-CTA-AG-AATTATA-CC-GCGCC
gi|108784 : CAATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC-AAAA--CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108785 : CAATCT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGAT-A--T-GTGTAAAGAGGGC-A-T-AAAACAA--TCCCC---A-G-ACC-ACA-CG-GCTTATA-CC-GCGCC
gi|108786 : CAATAT-GTATTTTA--T---TCT--CCACC-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTACAG-GGGC-A-TCGACACTA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CC-GC
gi|108787 : CAATAT-GTATTTTA--T---TCT--CTACA-C-TCA-CT-AC-AAAAA--A-TATGGT-A--T-GTGTAAGG-GGG--A-TCAAAACAA--TCACC---A-G-ACC-CCA-GG-AATTATA-CC-
gi|108788 : CAATAT-GTATTTTA--T---TC---CTACA-C-TCA-CT-AC-AAAAA-TA-T--GGT-A--T-GTGTAAAG-GGGG-A-TCAAAACAA--TCACC---A-A-GAC-CCA-GG-AATTATAGCT-GCCCC
gi|108789 : CAATAT-GTATTTTA--T--------CTACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTATAAAG-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AC-AATTATA-TC-GCACC
gi|108790 : CAATAT-GTATTTTA--T---TTT--CTACT-C-TCA-CT-AC-ATAAA-CA-TAAGGA-A--T-GTGTAAAC-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AG-AATTATA-C
gi|108791 : CAATAT-GTATTTTA--T---TCT--ATACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAACG-GAGC-A-TTA----AA--TTCCC---A-G-AAC-ACA-AG-AATTATA-CC-ACGCC
gi|108792 : CAATATTGTATTTTA--T---TCT--CTAC--C-TCA-CT-AC-AAAAATCA-TAGGTT-A--TGGTGTAACG-GAGC-A-T-----TAA--TTCCC---A-G-A-A-ACA-AG-AATTATA-CC-AC
gi|108793 : CAATAT-GTATTTTA--T---TAT--CTACC-C-TCA-CT-AC-AAAAA-CT-TAGGGA-A--T-GTGTAAAG-GGGC-A-TAAAAACAA--TCCAT---T-G-ACC-CCA-AG-AAGTATA-CC-
gi|108794 : CAATAT-GTATTTCA--T---TCT--CTAAT-CCTCA-CT-AC-AAAAA-CA-TAGG-T-A--T-GT-TAAAG-GG-C-A-TCAAAACAA--TCCCC---A-G-A-C-CCA-AG-AATTATA-CC--CGC
gi|108795 : CAATAT-GTATTTTA--A---ACT--CTAC-----------A--AAAAA-GA-TAGGGC-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TACCCAAAA-G-ATC-ACA-CG-AATTATA-CC-GCGCC
gi|108796 : CAATAT-GTATTT-A--T---TCT--CTACT-C-TCA-CT-AG-AAAAA-CA-TGGAGT-A--T-GTGTAAAG-GGGT-C-TC-AAACAA--T-CCC---A-G-ACT-CCA-AG-AA
gi|108797 : CAATAT-GTATTT---------------ACT-C-TCA-CT-ACAAAAAA-CA-TAGGGT-A--TGGTGTAAAG-GGGC-A-TT-AAACAA---CCCC---A-G-ATC-ACA-AA----TATA-CT-GCCCC
gi|108798 : CAA-AT-GTATTTTA--T---TCTT-CTACTTC-TCA-CT-ACCAAAAA-CA-T-GGGTAA--T-GTGTGAAG-TGAC-CTTCAAAACAA--T-GCC---A-G-ACC-ACA-AA-TTTTATA-CC-GCACC
gi|108799 : CAATGT-GTATTTTA--T---TCT--CTTCC-C-TCA-CT-AC--AAAA-CA-TAGAGT-A--T-GTGTAAAG-AGAC-A-TAAAAAC
gi|108800 : CAATAT-GTATTTTAACT---CCTATCTGC--C-TCA-CA-AC-ACAAA-CAATAGGGT-A--T-GTGTAA---GGGCTA-T--AGACAATTTCCCC---A-GAACT-CCA-AG-ACTTATA-
gi|108801 : CAATAT-GTATTTTA--T---TCA--TAGCT-G-TCACCT-AC-AAAAA-C--TCCCGT-A--T-GTGT-AAG-CGGCAA-TAAAAACAA---CCAC---A-G-ATCACCGTAG-ATATATA-CC-GCGCC
gi|108802 : AATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC--AAAA-CA-TAGGGT-A----GTGTAAAG-GGGC-A-TC-AAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108803 : AATAT-GTATTTTA--T---TCT--TTAGT-C-TCA-CT-AC-AAAAA-CA----------------TAAAG-GGGC---TTAAAACAA--TCCCC---A-G-ACC-ATA-AT-AATTACA-CC-GCACC
gi|108804 : TAT-GTATTTTA--T---TCT--CTACT-C-TCA-TC-AT-AAAAATCA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATT-CC-GCGCC
gi|108805 : TAT-GTATTTTA--T---TCT--CTATT-C-TCA-CC-CCCAAAAA-CA-TAGGTT-A--T-GTGTAAAG-GGGC-A-T-AAAACAA--TCCCC---AGG-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108806 : AT-GTATTTTA--T---TCT--CTACT-C-TCA-CG-AC-AAAAA-CA-TAGGGT-ACAT-GTATAAAG-GGGC-A-TCAGAACAA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CT-GCGTC
gi|108807 : ATTTTA--TCATTAT--CTACT-C-TCA-CTTACCAAAAA-CA-TAGGGT-A--TTGTGTT--T-GGGC-A-TCAAC-CAA--TCCCC---A-G-ACC-CCA-GGCAATCATA-CTAGCGC
gi|108808 : A--T---TCT--CAACT-C-TTA-CT-AC-AGAAA--A-TACGGT-A--T-GTGTT--G-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-TG-AATTATA-CC-GCGCC
gi|108809 : A-CA-TGGGGT-A--T-GTG-AAAG-GGAT-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATA-CC-
blockSeqs : T AC CAT AT TT C C T A T A A CA G A T T C TT AAA G A A T C G A
blockSeqs : . . . T T . . . C T . . . G . A . C . . . . . . . . .
blockSeqs : . . . . T . . . C . . . . T . . . C . . . . . . . . .
blockSeqs : . . . . C . . . C . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
finalCons : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
Alignments
lowQualScore : 1 22 222 33 11 1 1 1 6 3 1 1 22 4 1 3 1 2 22 222 1 1 1 1 1 1 1
lowQualScore : . .. ... .. .. . . . . . . . .. . . . . . .. ... . . . . . . .
lowQualScore : 7 11 777 77 99 5 5 5 2 0 5 5 00 4 5 0 5 0 11 777 5 5 5 5 5 6 9
consensus : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
Reference ( family-677 ) : CAATAT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108783 : CAATAT-GTATTTTA--T---TCT--TTACT-C-TCA-TT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCTCC---A-G-ACC-CTA-AG-AATTATA-CC-GCGCC
gi|108784 : CAATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC-AAAA--CA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108785 : CAATCT-GTATTTTA--T---TCT--CTACT-C-TCA-CT-AC-AAAAA-CA-TAGGAT-A--T-GTGTAAAGAGGGC-A-T-AAAACAA--TCCCC---A-G-ACC-ACA-CG-GCTTATA-CC-GCGCC
gi|108786 : CAATAT-GTATTTTA--T---TCT--CCACC-C-TCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTACAG-GGGC-A-TCGACACTA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CC-GC
gi|108787 : CAATAT-GTATTTTA--T---TCT--CTACA-C-TCA-CT-AC-AAAAA--A-TATGGT-A--T-GTGTAAGG-GGG--A-TCAAAACAA--TCACC---A-G-ACC-CCA-GG-AATTATA-CC-
gi|108788 : CAATAT-GTATTTTA--T---TC---CTACA-C-TCA-CT-AC-AAAAA-TA-T--GGT-A--T-GTGTAAAG-GGGG-A-TCAAAACAA--TCACC---A-A-GAC-CCA-GG-AATTATAGCT-GCCCC
gi|108789 : CAATAT-GTATTTTA--T--------CTACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTATAAAG-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AC-AATTATA-TC-GCACC
gi|108790 : CAATAT-GTATTTTA--T---TTT--CTACT-C-TCA-CT-AC-ATAAA-CA-TAAGGA-A--T-GTGTAAAC-GAGC-A-TCAAACCAA--TACCC---A-G-ACC-CCA-AG-AATTATA-C
gi|108791 : CAATAT-GTATTTTA--T---TCT--ATACT-C-GCA-CT-AC-AAAAA-CA-TAGGGT-A--T-GTGTAACG-GAGC-A-TTA----AA--TTCCC---A-G-AAC-ACA-AG-AATTATA-CC-ACGCC
gi|108792 : CAATATTGTATTTTA--T---TCT--CTAC--C-TCA-CT-AC-AAAAATCA-TAGGTT-A--TGGTGTAACG-GAGC-A-T-----TAA--TTCCC---A-G-A-A-ACA-AG-AATTATA-CC-AC
gi|108793 : CAATAT-GTATTTTA--T---TAT--CTACC-C-TCA-CT-AC-AAAAA-CT-TAGGGA-A--T-GTGTAAAG-GGGC-A-TAAAAACAA--TCCAT---T-G-ACC-CCA-AG-AAGTATA-CC-
gi|108794 : CAATAT-GTATTTCA--T---TCT--CTAAT-CCTCA-CT-AC-AAAAA-CA-TAGG-T-A--T-GT-TAAAG-GG-C-A-TCAAAACAA--TCCCC---A-G-A-C-CCA-AG-AATTATA-CC--CGC
gi|108795 : CAATAT-GTATTTTA--A---ACT--CTAC-----------A--AAAAA-GA-TAGGGC-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TACCCAAAA-G-ATC-ACA-CG-AATTATA-CC-GCGCC
gi|108796 : CAATAT-GTATTT-A--T---TCT--CTACT-C-TCA-CT-AG-AAAAA-CA-TGGAGT-A--T-GTGTAAAG-GGGT-C-TC-AAACAA--T-CCC---A-G-ACT-CCA-AG-AA
gi|108797 : CAATAT-GTATTT---------------ACT-C-TCA-CT-ACAAAAAA-CA-TAGGGT-A--TGGTGTAAAG-GGGC-A-TT-AAACAA---CCCC---A-G-ATC-ACA-AA----TATA-CT-GCCCC
gi|108798 : CAA-AT-GTATTTTA--T---TCTT-CTACTTC-TCA-CT-ACCAAAAA-CA-T-GGGTAA--T-GTGTGAAG-TGAC-CTTCAAAACAA--T-GCC---A-G-ACC-ACA-AA-TTTTATA-CC-GCACC
gi|108799 : CAATGT-GTATTTTA--T---TCT--CTTCC-C-TCA-CT-AC--AAAA-CA-TAGAGT-A--T-GTGTAAAG-AGAC-A-TAAAAAC
gi|108800 : CAATAT-GTATTTTAACT---CCTATCTGC--C-TCA-CA-AC-ACAAA-CAATAGGGT-A--T-GTGTAA---GGGCTA-T--AGACAATTTCCCC---A-GAACT-CCA-AG-ACTTATA-
gi|108801 : CAATAT-GTATTTTA--T---TCA--TAGCT-G-TCACCT-AC-AAAAA-C--TCCCGT-A--T-GTGT-AAG-CGGCAA-TAAAAACAA---CCAC---A-G-ATCACCGTAG-ATATATA-CC-GCGCC
gi|108802 : AATAT-GTATTTCA--T---TCT--CTAAT-C-TCA-CT-AC--AAAA-CA-TAGGGT-A----GTGTAAAG-GGGC-A-TC-AAACAA--TCCCC---A-G-ACC-CCA-AG-AATTATA-
gi|108803 : AATAT-GTATTTTA--T---TCT--TTAGT-C-TCA-CT-AC-AAAAA-CA----------------TAAAG-GGGC---TTAAAACAA--TCCCC---A-G-ACC-ATA-AT-AATTACA-CC-GCACC
gi|108804 : TAT-GTATTTTA--T---TCT--CTACT-C-TCA-TC-AT-AAAAATCA-TAGGGT-A--T-GTGTAAAG-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATT-CC-GCGCC
gi|108805 : TAT-GTATTTTA--T---TCT--CTATT-C-TCA-CC-CCCAAAAA-CA-TAGGTT-A--T-GTGTAAAG-GGGC-A-T-AAAACAA--TCCCC---AGG-ACC-CCA-AG-AATTATA-CC-GCGCC
gi|108806 : AT-GTATTTTA--T---TCT--CTACT-C-TCA-CG-AC-AAAAA-CA-TAGGGT-ACAT-GTATAAAG-GGGC-A-TCAGAACAA--TCCCC---A-G-ACC-TCA-AG-ATTTATA-CT-GCGTC
gi|108807 : ATTTTA--TCATTAT--CTACT-C-TCA-CTTACCAAAAA-CA-TAGGGT-A--TTGTGTT--T-GGGC-A-TCAAC-CAA--TCCCC---A-G-ACC-CCA-GGCAATCATA-CTAGCGC
gi|108808 : A--T---TCT--CAACT-C-TTA-CT-AC-AGAAA--A-TACGGT-A--T-GTGTT--G-GGGC-A-TCAAAACAA--TCCCC---A-G-ACC-CCA-TG-AATTATA-CC-GCGCC
gi|108809 : A-CA-TGGGGT-A--T-GTG-AAAG-GGAT-A-TCAAAACAA--TCCCC---A-G-ACC-CTA-AG-AATTATA-CC-