lowQualScore : 11111111111 3333
lowQualScore : 2 2 2 55 2 1 2 2 6 2 1 2 2 7 2 2 2 0 2 4 444 33 33 33 33 2 33 33 2 4 00000000000 2 33 888888888 2 44 2 22 2 2 7777 2 66 55 22 2 222 666666 2 77 2 2 2 2 22 77777 2 4 7 2 444 0000 3 2
lowQualScore : . . . .. . . . . . . . . . . . . . . . . ... .. .. .. .. . .. .. . . ........... . .. ......... . .. . .. . . .... . .. .. .. . ... ...... . .. . . . . .. ..... . . . . ... .... . .
lowQualScore : 5 5 5 99 5 8 2 2 2 4 6 5 5 5 5 5 5 2 4 5 444 44 88 44 44 5 44 44 4 4 66666666666 2 22 444444444 1 88 0 66 0 0 0000 0 00 00 99 1 555 111111 1 77 0 0 0 1 99 44444 0 0 6 2 444 3333 8 5
consensus : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGT-T-CGCTTGAAAA-TCT---GTTT--TT-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATTAGCGAGTT-GCATGCCCT-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-CTCC-TG-ACCTCC-GTGA-CGTAGA--AGG-----TC-A-CACAAG-CAATTGCA---AT---AGGCGC-TTCCGCCTAAAAA
Reference ( gi|72951 ) : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGT-T-CGCTTGAAAA-TAT---GTTT--TT-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATTAGCGAGTT-GCATGCCCT-TT----G-TTTG-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-TTCC-TG-ACCTCC-GTGA-CGTAGA--AGG-----TC-A-CATAAG-CAATTGCA---A----AGGCAC-TTCCGCCTAAAAA
gi|72952 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT--AGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGT-T-CGCTTGAAAA-TAT---GTTT--TT-A--ACT--GC-CGT--TA--CCCT-GTTTCT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATTAGCGAGTT-GCATGCCCT-TT----G-TTTG-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-TTCC-TG-ACCTCC-GTGA-CGTAGA--AGG-----TC-A-CATAAG-CAATTGCA---AT---AGGCAC-TT-CGCCTAAAAA
gi|72953 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-A-TTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGT-T-CGCTTGAAAA-TAT---GTTT--T--A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATTAGCGAGTT-GCATGCCCT-TT----G-TTTG-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-TTCC-TG-ACCTCC-GTGA-CGTAGA--AGG-----TC-A-CATAAG-CAATTGC----T----AGGCA--TTCCGCCTAAAAA
gi|72955 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-ATA-GTGT-T-TGCTTGAAAA-TCT---GTTT--TT-A--ACA--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--AGTAGCGAGTT-ACATGCCTT-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-CTCC-TG-ACCTCT-GTGA-CGTAGA--AGG-----TC-A-CACAAA-CGATTGCA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72954 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGGT-C-AGGAATGA-TAATAAAAT-A-TCA-GTGT-T-CTCTTGAAGA-TAT---GTTT--TT-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TCA--ATTAGCGAGTT-GCATG-CCT-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-CTCC-TG-ACCTCT-GTGA-CGTAGA--AGG-----TC-A-AACAAA-CAATTGCA---AT---AGGCGC-TTCCGCCTACAAA
gi|72956 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGACTC-A---------------AT-A-TTA-GTGT-T-CGCTTGAAAA-TCC---GTTT--TA-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATAAGCGAGTT-GCATGCCCT-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-CTTC-TG-ACCTCC-ATGA-CGTAGA--AGG-----TC-A-CACAAA-CCATTGCA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72957 : CCGCTTTAGCCGTGTTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAA-GA-TAATAAAAT-A-TTA-GTGT-T-CTCTTGAAAA-TCT---GTTT--TT-A--ACT--GC-CGT--TA--CCCT-GAC-CT-----------GA-TGGTTTA---------T-CT-CCGAAT-TTA--ATTAGCGATGT-GCATGCCCT-TT----G-CTTA-TGTGATTTCAGTTTG--G--AGT-ACCAT-GAAA------AAAGG-G-CTCC-TG-ACCTCT-GTGA-CGTAGA--AGG-----TC-A-CACAAA-CGTATGCA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72959 : CCGCTT-AGC-GTTGTT-TTCTTTGGGCTCCAATTTT-TAGACTC-A---------------AT-A-TTA-GTGT-TTCGCTTGAAAA-TCC---GTTT--TA-A--AC---GC-CGT--TAACCTCT-GTTTCT-----------GA-TGG-TTA---------T-C--CCGA-T-TTA--AT-AGCGAGTTAGCATAGCCC-TT----G-TTTA-TGTGAATTCCGTTGGA-G--AGT-AC-AT-G-AA------AAAGG---TTCT-TG-ACCTCC-ATGA-CGTAGA--AGG-----TC-A-CACAAAACCATTGCA---A----TAGCGC-TTCCGCCTAAAAA
gi|72961 : CCGCTT-ATCCGTTGTT-C-ATTTG--CTC-AATTTT-TAGATCC-CCGAATAA-TGAGAAAAT-A-TAT-GCGT-T-CGTATGAAAA-CCT---GTTT--TTTG--GTT--GT-TGT--TT--TTTT-TTT-TTTTTGGGGGGGGGG-TGG-TTACTGTCGTCAT-T--CC--ATATTA--ATTAA-----T-GCATGTCAT-TT--------TG--ATGAATTCCGTTTG--G--AGT-ATCGC---AA------AAAGG-G-TTCC-TG-ACCCCT-GTGA-CGTAGAATAGGCGCTCCC-G-CATAA--CAAT
gi|72962 : CTGCTT-GTCTGCTGTT-C-CTTTA--TTC-AGTTTT-TAGATAC-GCGAATGA-TGG--AAAT-A-C-A-GTTTAT-C----------CAC---ATTT--T-----ACT--GT-AAA--AA--ACAT-ATC-CT-----------GA-TA---TA---------T-TTACCGAAT-T-------AGCGATCT-GCATCCCCC-CT----G-TTTA-TTTAAATTCCGTTTG--G--AGT---------------------------------GCCTCT-GTGA-CATAGA--AGC-----TC-AGTA-AAG-CAACTGAA---G----TGACCC-TTTCACCTGAAAA
gi|72963 : CTGCTT-GTCCGTTGTT-C-CGTTG--CTC-AGTTTA-TATATTC-AAGAATGA-TAAGTACAT-A-TAATGTAT-T-TA--TGAGAA-CATGGAGTCT--TC-ATTACT--GT-CAT--GA--TCCC-ATT-TT-----------GA-TGT-TCA---------T-T--GCGAAT-TTG--ATTTGCAATTT-GTATACATA-GT----G-TTAA-TGTAAA
gi|72958 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TATGCCC-CGGAAT
gi|72960 : CCACTT-ACCCGTTGTT-C-CTTTT--CTC-AGTTTT-AAGATTC-ATGAATGA-TGA
gi|72964 : CGCTT-GGCCGTTGTT-A-TTTTG--CTC-AATTTT-TAGATTC-GTAAATGA-TAAGAAAAT-A-T---ACGT-T--GTTTGGAAA-TCT---GTTTTCTT-T--ACT--GT-CGT--GA--CCCT-AT---T-----------GA-TGT-TTA---------T-C--TCGAAT-TTA--ATTAGCAAGTT-TTATGCCCT-TTTC--G-TTTACCCTGAATTTCGTTTGGCG--AGTAACCACAA-AA------AAAGG-A-CCCC-TG-ACCTCT-ATGC-TGTAGA--GGG-----TC-A-CCAAAG-CTATTGCATTTATTGTACACGC-TTCCGCCTAAAAA
gi|72965 : CGCTT-CGCC-TTATTCT-TTTTT--CTC-AATTTTCTTGATC-------TGA-GGATAAA----------------CGTTTGAAA--TAT---GGTA--TT-A--ACT--TC-T-T--TA--CC-T-GTT-GT-----------GA-TGG-TTA---------T-C--CCGAAT-TTA--ATCTGCGGCTT-GCAT--CCTATC----GTTTTA-TGCTACTTCCGTTTG--GTAAGT-ACCAT-G-AATAACACAGAGA-GTTTCC-TG-ACCTCCTGTGAGCGTAGA--ATG-----GC-A--ATAA
gi|72966 : CGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTAT-TAGATTC-ATGATTGA-TAATTAAAT-A-TAA-ATGT-T-AGTTTGAAAA-Ta
gi|72967 : TT-AGCCGTTGAT-T-CTGTGG-CTC-ATTTTT-TAGATTCCAGGAATGAATAATAAAATCACTTA-GTAT-T-CGCTTGAAAAGTCT---TGTT--TT-A--ACTCCGCACGTGCTC--CACTCGTT-CT-----------GAATGG-T-A---------TAC--CCGAAT-TTA--ATTAGCGAGTT-GCATGCCCT-TT----G--TTA-TGTGACTTCCG-TTG--G--A-T-ACCAT-G-GA------AAAGG-GCTTCC-TGCACCTCT-GTGA-CGTAGA--AGG-----TCAA-CA-AAA-CGA-TGCA---A----TAGCGCATTCCGCCTAAAAA
gi|72968 : TTGT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGT-T-CGCTTGAAAA-TCT---G-TT--TT-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGG-TTA---------T----TCGAAT-TTA--ATTAGGGAGTT-GCATG--CT-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G--A------AAAGG-G-CTCC-TG-ACCTCC-GTGA-CGT-GA--AGGT----TC-A-CACAAA-CGATTGCA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72969 : T-TAGATTC-ATGAATGA-TAATAAAAT-A-T-----------------AAA-TCT---GTTT--TT-A--ACT--GT-CAT--TA--CCTT-GTT-CT-----------GA--GG-TTA---------T-C--CCGAAT-TTA--ATTAGCG
gi|72970 : TGAAAA-TAT----------T-G---CT--GT-TGT--GA--TCCC-ATT-TT-----------GA-TG--------------------------TT----TTAGCGAGTT-GCATGCTCT-TT----G-ATTA-TGTGAATTCTGTTTG--G--AGT-ACCAT-G-AA------AAAGGCG---CC-TG-ATCTCT-GTG
gi|72971 : T-ATT-TT-----------GA-TAT-TTA---------T-C--GCGCAT-TTG--ATTAGCGAGTC-GCATGCCTC-TT----G-TTTA-TGTGAATTCCGTTTG--G--AGT-ACCAT-G-AA------AAATG-A-CCCC-TG-AACTCC-GTGA-CGTAGA--AGG-----TC-A-CATAAG-CAATTACA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72972 : TT-TT-----------GA-TGC-TTA---------T-T--GCGAAT-TTG--ATTAGCGAGTT-GCGTGCCAT-TT----G-TTTA-TGTAAATTCCGTTTG--A--ATG-AACAC-G-AA------AAAGG-G-CTCC-TG-ACCACC-GTGA-CGTAGA--AGG-----TC-A-CAAAAG-CAATTACA---AT---AGGCGC-TTCCGCCTAAAAA
gi|72973 : -TTA---------T-C--GCGAAT-TTGTGATTAGTGAGTT-CCATGCCCT-TT----G-TTTA-ATCGAATTCCGTT-G--G--AGT-ACCAT---AA------AAAGG-G-CTCC-TG-ACATCC-GTGA-CGTAGA--GGG-----TC-A-CATAAG-CAATTGCA---AT---AGGCGC-TTCCG
gi|72974 : --CCAAAT-ATT--ATTTGCAGTTT-GCACGCGTT-TT----G-TTTC-AGTGAATTTAGTTTG--G--AAT-AGTAC-A-GA------AAAGA-G-CTGAGTG-ATCTAT-GTAA-CGTAGA--AGG-----TC-ATCA-AAA-CA-TTGCA---A----TAGCAC-TTCCGCCTA
gi|72975 : TA--ATTAGTGAGTT-GCATGTCCT-TTAATTG-TTTA-TATGAATTCAGTTTG--G--AGT-ACCAT-G-AA------AAAGG-G-CTCC-TG-ACCTCC-GTAA-CGTAGA--AGG-----TC-A-CATAAG-CAATTGC
gi|72976 : CC-TG-ACCTCC-GTGA-CGTAGA--AGG-----TC-A-CA
gi|72977 : -A-CAAAAG-CAATTGCA---AT---AGGCGC-TTCCGCCTAAAAA
Alignments
lowQualScore : 11111111111 111111111
lowQualScore : 2 2 2 55 2 1 2 2 5 2 0 2 2 6 2 2 2 444 2 33 1 33 33 2 33 33 2 4 00000000000 2 2 000000000 44 1 22 3333 1 1 6666 1 1 1 44 22 2 2 555555 2 2 2 1 1 1 2 2 2 88 666666 2
lowQualScore : . . . .. . . . . . . . . . . . . . ... . .. . .. .. . .. .. . . ........... . . ......... .. . .. .... . . .... . . . .. .. . . ...... . . . . . . . . . .. ...... .
lowQualScore : 4 4 4 66 4 1 1 1 3 2 9 4 4 5 4 4 4 444 5 44 3 44 44 5 44 44 4 4 66666666666 2 0 000000000 55 9 55 9999 9 9 7777 9 9 9 88 88 0 0 888888 0 0 0 9 9 9 0 1 0 55 444444 2
consensus : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
Reference ( family-675 ) : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72951 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------A-AGGCAC-TTCCGCCTAAAAA
gi|72952 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT--AGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------ATAGGCAC-TT-CGCCTAAAAA
gi|72953 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-A-TTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGC--------TAGGCA--TTCCGCCTAAAAA
gi|72954 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGGT-C-AGGAATGA-TAATAAAAT-A-TCA-GTGTT-CTCTTGAAGA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TCA--AT----TAGCGAGTT-GCATGCC-T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-AAC-AAACAATTGCA------ATAGGCGC-TTCCGCCTACAAA
gi|72955 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-ATA-GTGTT-TGCTTGAAAA-TCT---G-TTT--TTA--ACA--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AG----TAGCGAGTT-ACATGCCTT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72956 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGACTC-A---------------AT-A-TTA-GTGTT-CGCTTGAAAA-TCC---G-TTT--TAA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----AAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TTC-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CAC-AAACCATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72957 : CCGCTTTAGCCGTGTTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAA-GA-TAATAAAAT-A-TTA-GTGTT-CTCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GAC-CT-----------GA-TGGT-TT--------ATCT-CCGAAT-TTA--AT----TAGCGATGT-GCATGCCCT-TT----G-CTTA-TG-TGATTTCAGTTTG--G--AGT-ACCAT-GAA------AAAAGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGTATGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72958 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TATGCCC-CGGAAT
gi|72959 : CCGCTT-AGC-GTTGTT-TTCTTTGGGCTCCAATTTT-TAGACTC-A---------------AT-A-TTA-GTGTTTCGCTTGAAAA-TCC---G-TTT--TAA--AC---GC-CGT--TAACCTCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGA-T-TTA--AT-----AGCGAGTTAGCATAGCCC-TT----G-TTTA-TG-TGAATTCCGTTGGA-G--AGT-A-CAT-GAA------AA-A-GG-T-TCT-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CACAAAACCATTGCA------ATA-GCGC-TTCCGCCTAAAAA
gi|72960 : CCACTT-ACCCGTTGTT-C-CTTTT--CTC-AGTTTT-AAGATTC-ATGAATGA-TGA
gi|72961 : CCGCTT-ATCCGTTGTT-C-ATTTG--CTC-AATTTT-TAGATCC-CCGAATAA-TGAGAAAAT-A-TAT-GCGTT-CGTATGAAAA-CCT---GTTTT--TTG--GTT--GT-TGT--TT--TTTT-TTT-TTTTTGGGGGGGGGG-TGGT-TACTGTCGTCATT--CC--ATATTA--AT----TAA-----T-GCATGTCAT-TT-----------TGATGAATTCCGTTTG--G--AGT-ATCGC--AA------AA-AGGG-T-TCC-TG-ACCCCT-GTGA-CGTAG-----------------------A------ATAGGCGC-TCCCGCATAACAA
gi|72962 : CTGCTT-GTCTGCTGTT-C-CTTTA--TTC-AGTTTT-TAGATAC-GCGAATGA-TGG--AAAT-A-C-A-GT-------TT----A-TCC---A-CAT--TTT--ACT--GT-AAA--AA--ACAT-ATC-CT-----------GA-TA---T---------ATTTACCGAAT-T-----------AGCGATCT-GCATCCCCC-CT----G-TTTA-TT-TAAATTCCGTTTG--G--AGT---------------------------------GCCTCT-GTGA-CATAGAAGC-TCA-GTA-AAGCAACTGAA------GT-GACCC-TTTCACCTGAAAAt
gi|72963 : CTGCTT-GTCCGTTGTT-C-CGTTG--CTC-AGTTTA-TATATTC-AAGAATGA-TAAGTACAT-A-TAATGTATT-TA--TGAGAA-CATGGAG-TCT--TCATTACT--GT-CAT--GA--TCCC-ATT-TT-----------GA-TGTT-C---------ATT--GCGAAT-TTG--AT----TTGCAATTT-GTATACATA-GT----G-TTAA-TG-TAAA
gi|72964 : CGCTT-GGCCGTTGTT-A-TTTTG--CTC-AATTTT-TAGATTC-GTAAATGA-TAAGAAAAT-A-T---ACGTT--GTTTGGAAA-TCT---G-TTTTCTTT--ACT--GT-CGT--GA--CCCT-AT---T-----------GA-TGTT-T---------ATC--TCGAAT-TTA--AT----TAGCAAGTT-TTATGCCCT-TTTC--G-TTTACCC-TGAATTTCGTTTGGCG--AGTAACCACAAAA------AA-AGGA-C-CCC-TG-ACCTCT-ATGC-TGTAGAGGG-TCA-CCA-AAGCTATTGCATTTATTGTACACGC-TTCCGCCTAAAAA
gi|72965 : CGCTT-CGCC-TTATTCT-TTTTT--CTC-AATTTTCTTGATC-------TGA-GGATAAA---------------CGTTTGAAA--TAT---G-GTA--TTA--ACT--TC-T-T--TA--CC-T-GTT-GT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----CTGCGGCTT-GCAT--CCTATC----GTTTTA-TG-CTACTTCCGTTTG--GTAAGT-ACCAT-GAATAACACAG-AGAGTT-TCC-TG-ACCTCCTGTGAGCGTAGAA
gi|72966 : CGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTAT-TAGATTC-ATGATTGA-TAATTAAAT-A-TAA-ATGTT-AGTTTGAAAA-Ttggcaataaa
gi|72967 : TT-AGCCGTTGAT-T-CTGTGG-CTC-ATTTTT-TAGATTCCAGGAATGAATAATAAAATCACTTA-GTATT-CGCTTGAAAAGTCT---T-GTT--TTA--ACTCCGCACGTGCTC--CACTCGTT-CT-----------GAATGGTAT---------A-C--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G--TTA-TG-TGACTTCCG-TTG--G--A-T-ACCAT-GGA------AA-AGGG-CTTCC-TGCACCTCT-GTGA-CGTAGAAGG-TCA--ACAAAACGA-TGCA------ATA-GCGCATTCCGCCTAAAAA
gi|72968 : TTGT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATT--C-GAAT-TTA--AT----TAGGGAGTT-GCATGC--T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA--GGG-C-TCC-TG-ACCTCC-GTGA-CGT-GAAGGTTCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72969 : T-TAGATTC-ATGAATGA-TAATAAAAT-A-T----------------AAA-TCT---G-TTT--TTA--ACT--GT-CAT--TA--CCTT-GTT-CT-----------GA--GGT-T---------ATC--CCGAAT-TTA--AT----TAGCG
gi|72970 : GT-G---------ATC--CC-ATT-TTG--ATGTTTTAGCGAGTT-GCATGCTCT-TT----G-ATTA-TG-TGAATTCTGTTTG--G--AGT-ACCAT-GAA------AA-A-GG-C-GCC-TG-ATCTCT-GTG
gi|72971 : tgaaaatattgctgttT-ATT-TT-----------GA-TATT-T---------ATC--GCGCAT-TTG--AT----TAGCGAGTC-GCATGCCTC-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-ATGA-C-CCC-TG-AACTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72972 : TT-TT-----------GA-TGCT-T---------ATT--GCGAAT-TTG--AT----TAGCGAGTT-GCGTGCCAT-TT----G-TTTA-TG-TAAATTCCGTTTG--A--ATG-AACAC-GAA------AA-AGGG-C-TCC-TG-ACCACC-GTGA-CGTAGAAGG-TCA-CAA-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72973 : T-T---------ATC--GCGAAT-TTGTGAT----TAGTGAGTT-CCATGCCCT-TT----G-TTTA-AT-CGAATTCCGTT-G--G--AGT-ACCAT--AA------AA-AGGG-C-TCC-TG-ACATCC-GTGA-CGTAGAGGG-TCA-CAT-AAGCAATTGCA------ATAGGCGC-TTCCG
gi|72974 : --CCAAAT-ATT--AT----TTGCAGTTT-GCACGCGTT-TT----G-TTTC-AG-TGAATTTAGTTTG--G--AAT-AGTAC-AGA------AA-AGAG-C-TGAGTG-ATCTAT-GTAA-CGTAGAAGG-TCATCA--AAACA-TTGCA------ATA-GCAC-TTCCGCCTA
gi|72975 : TA--AT----TAGTGAGTT-GCATGTCCT-TTAATTG-TTTA-TA-TGAATTCAGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTAA-CGTAGAAGG-TCA-CAT-AAGCAATTGC
gi|72976 : CC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CA
gi|72977 : A-CAA-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
Alignments
lowQualScore : 11111111111 111111111
lowQualScore : 2 2 2 55 2 1 2 2 5 2 0 2 2 6 2 2 2 444 2 33 1 33 33 2 33 33 2 4 00000000000 2 2 000000000 44 1 22 3333 1 1 6666 1 1 1 44 22 2 2 555555 2 2 2 1 1 1 2 2 2 88 666666 2
lowQualScore : . . . .. . . . . . . . . . . . . . ... . .. . .. .. . .. .. . . ........... . . ......... .. . .. .... . . .... . . . .. .. . . ...... . . . . . . . . . .. ...... .
lowQualScore : 4 4 4 66 4 1 1 1 3 2 9 4 4 5 4 4 4 444 5 44 3 44 44 5 44 44 4 4 66666666666 2 0 000000000 55 9 55 9999 9 9 7777 9 9 9 88 88 0 0 888888 0 0 0 9 9 9 0 1 0 55 444444 2
consensus : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
Reference ( family-675 ) : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72951 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------A-AGGCAC-TTCCGCCTAAAAA
gi|72952 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT--AGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------ATAGGCAC-TT-CGCCTAAAAA
gi|72953 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-A-TTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGC--------TAGGCA--TTCCGCCTAAAAA
gi|72954 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGGT-C-AGGAATGA-TAATAAAAT-A-TCA-GTGTT-CTCTTGAAGA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TCA--AT----TAGCGAGTT-GCATGCC-T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-AAC-AAACAATTGCA------ATAGGCGC-TTCCGCCTACAAA
gi|72955 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-ATA-GTGTT-TGCTTGAAAA-TCT---G-TTT--TTA--ACA--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AG----TAGCGAGTT-ACATGCCTT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72956 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGACTC-A---------------AT-A-TTA-GTGTT-CGCTTGAAAA-TCC---G-TTT--TAA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----AAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TTC-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CAC-AAACCATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72957 : CCGCTTTAGCCGTGTTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAA-GA-TAATAAAAT-A-TTA-GTGTT-CTCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GAC-CT-----------GA-TGGT-TT--------ATCT-CCGAAT-TTA--AT----TAGCGATGT-GCATGCCCT-TT----G-CTTA-TG-TGATTTCAGTTTG--G--AGT-ACCAT-GAA------AAAAGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGTATGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72958 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TATGCCC-CGGAAT
gi|72959 : CCGCTT-AGC-GTTGTT-TTCTTTGGGCTCCAATTTT-TAGACTC-A---------------AT-A-TTA-GTGTTTCGCTTGAAAA-TCC---G-TTT--TAA--AC---GC-CGT--TAACCTCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGA-T-TTA--AT-----AGCGAGTTAGCATAGCCC-TT----G-TTTA-TG-TGAATTCCGTTGGA-G--AGT-A-CAT-GAA------AA-A-GG-T-TCT-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CACAAAACCATTGCA------ATA-GCGC-TTCCGCCTAAAAA
gi|72960 : CCACTT-ACCCGTTGTT-C-CTTTT--CTC-AGTTTT-AAGATTC-ATGAATGA-TGA
gi|72961 : CCGCTT-ATCCGTTGTT-C-ATTTG--CTC-AATTTT-TAGATCC-CCGAATAA-TGAGAAAAT-A-TAT-GCGTT-CGTATGAAAA-CCT---GTTTT--TTG--GTT--GT-TGT--TT--TTTT-TTT-TTTTTGGGGGGGGGG-TGGT-TACTGTCGTCATT--CC--ATATTA--AT----TAA-----T-GCATGTCAT-TT-----------TGATGAATTCCGTTTG--G--AGT-ATCGC--AA------AA-AGGG-T-TCC-TG-ACCCCT-GTGA-CGTAG-----------------------A------ATAGGCGC-TCCCGCATAACAA
gi|72962 : CTGCTT-GTCTGCTGTT-C-CTTTA--TTC-AGTTTT-TAGATAC-GCGAATGA-TGG--AAAT-A-C-A-GT-------TT----A-TCC---A-CAT--TTT--ACT--GT-AAA--AA--ACAT-ATC-CT-----------GA-TA---T---------ATTTACCGAAT-T-----------AGCGATCT-GCATCCCCC-CT----G-TTTA-TT-TAAATTCCGTTTG--G--AGT---------------------------------GCCTCT-GTGA-CATAGAAGC-TCA-GTA-AAGCAACTGAA------GT-GACCC-TTTCACCTGAAAAt
gi|72963 : CTGCTT-GTCCGTTGTT-C-CGTTG--CTC-AGTTTA-TATATTC-AAGAATGA-TAAGTACAT-A-TAATGTATT-TA--TGAGAA-CATGGAG-TCT--TCATTACT--GT-CAT--GA--TCCC-ATT-TT-----------GA-TGTT-C---------ATT--GCGAAT-TTG--AT----TTGCAATTT-GTATACATA-GT----G-TTAA-TG-TAAA
gi|72964 : CGCTT-GGCCGTTGTT-A-TTTTG--CTC-AATTTT-TAGATTC-GTAAATGA-TAAGAAAAT-A-T---ACGTT--GTTTGGAAA-TCT---G-TTTTCTTT--ACT--GT-CGT--GA--CCCT-AT---T-----------GA-TGTT-T---------ATC--TCGAAT-TTA--AT----TAGCAAGTT-TTATGCCCT-TTTC--G-TTTACCC-TGAATTTCGTTTGGCG--AGTAACCACAAAA------AA-AGGA-C-CCC-TG-ACCTCT-ATGC-TGTAGAGGG-TCA-CCA-AAGCTATTGCATTTATTGTACACGC-TTCCGCCTAAAAA
gi|72965 : CGCTT-CGCC-TTATTCT-TTTTT--CTC-AATTTTCTTGATC-------TGA-GGATAAA---------------CGTTTGAAA--TAT---G-GTA--TTA--ACT--TC-T-T--TA--CC-T-GTT-GT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----CTGCGGCTT-GCAT--CCTATC----GTTTTA-TG-CTACTTCCGTTTG--GTAAGT-ACCAT-GAATAACACAG-AGAGTT-TCC-TG-ACCTCCTGTGAGCGTAGAA
gi|72966 : CGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTAT-TAGATTC-ATGATTGA-TAATTAAAT-A-TAA-ATGTT-AGTTTGAAAA-Ttggcaataaa
gi|72967 : TT-AGCCGTTGAT-T-CTGTGG-CTC-ATTTTT-TAGATTCCAGGAATGAATAATAAAATCACTTA-GTATT-CGCTTGAAAAGTCT---T-GTT--TTA--ACTCCGCACGTGCTC--CACTCGTT-CT-----------GAATGGTAT---------A-C--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G--TTA-TG-TGACTTCCG-TTG--G--A-T-ACCAT-GGA------AA-AGGG-CTTCC-TGCACCTCT-GTGA-CGTAGAAGG-TCA--ACAAAACGA-TGCA------ATA-GCGCATTCCGCCTAAAAA
gi|72968 : TTGT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATT--C-GAAT-TTA--AT----TAGGGAGTT-GCATGC--T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA--GGG-C-TCC-TG-ACCTCC-GTGA-CGT-GAAGGTTCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72969 : T-TAGATTC-ATGAATGA-TAATAAAAT-A-T----------------AAA-TCT---G-TTT--TTA--ACT--GT-CAT--TA--CCTT-GTT-CT-----------GA--GGT-T---------ATC--CCGAAT-TTA--AT----TAGCG
gi|72970 : GT-G---------ATC--CC-ATT-TTG--ATGTTTTAGCGAGTT-GCATGCTCT-TT----G-ATTA-TG-TGAATTCTGTTTG--G--AGT-ACCAT-GAA------AA-A-GG-C-GCC-TG-ATCTCT-GTG
gi|72971 : tgaaaatattgctgttT-ATT-TT-----------GA-TATT-T---------ATC--GCGCAT-TTG--AT----TAGCGAGTC-GCATGCCTC-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-ATGA-C-CCC-TG-AACTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72972 : TT-TT-----------GA-TGCT-T---------ATT--GCGAAT-TTG--AT----TAGCGAGTT-GCGTGCCAT-TT----G-TTTA-TG-TAAATTCCGTTTG--A--ATG-AACAC-GAA------AA-AGGG-C-TCC-TG-ACCACC-GTGA-CGTAGAAGG-TCA-CAA-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72973 : T-T---------ATC--GCGAAT-TTGTGAT----TAGTGAGTT-CCATGCCCT-TT----G-TTTA-AT-CGAATTCCGTT-G--G--AGT-ACCAT--AA------AA-AGGG-C-TCC-TG-ACATCC-GTGA-CGTAGAGGG-TCA-CAT-AAGCAATTGCA------ATAGGCGC-TTCCG
gi|72974 : --CCAAAT-ATT--AT----TTGCAGTTT-GCACGCGTT-TT----G-TTTC-AG-TGAATTTAGTTTG--G--AAT-AGTAC-AGA------AA-AGAG-C-TGAGTG-ATCTAT-GTAA-CGTAGAAGG-TCATCA--AAACA-TTGCA------ATA-GCAC-TTCCGCCTA
gi|72975 : TA--AT----TAGTGAGTT-GCATGTCCT-TTAATTG-TTTA-TA-TGAATTCAGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTAA-CGTAGAAGG-TCA-CAT-AAGCAATTGC
gi|72976 : CC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CA
gi|72977 : A-CAA-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
blockSeqs : T C T GG C A C C G A C C T T T G GGA T TC T TT CC A GC AC C T TTTGGGGGGGG A A ACTGTCGTC TA A TG GTTT A A AATT T C A GC TA A A TAACAC A T T G C T G T T CA TTTATT A
blockSeqs : . . . G . A . . G . . . T . . . . . . T . . . . . . T . . . T T . . . . . TC . . . A . . . . . . . . . . . . . CA . .
blockSeqs : . . . . . T . . G . . . C . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . A . . G . . . T . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . T . . G . . . T . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . A . . G . . . T . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . A . . T . . . T . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . G . . C . . . A . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . A . . C . . . A . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . G . . A . . . A . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . G . . T . . . T . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . A . . T . . . T . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . A . . G . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . A . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . T . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
finalCons : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
Alignments
lowQualScore : 11111111111 111111111
lowQualScore : 2 2 2 55 2 1 2 2 5 2 0 2 2 6 2 2 2 444 2 33 1 33 33 2 33 33 2 4 00000000000 2 2 000000000 44 1 22 3333 1 1 6666 1 1 1 44 22 2 2 555555 2 2 2 1 1 1 2 2 2 88 666666 2
lowQualScore : . . . .. . . . . . . . . . . . . . ... . .. . .. .. . .. .. . . ........... . . ......... .. . .. .... . . .... . . . .. .. . . ...... . . . . . . . . . .. ...... .
lowQualScore : 4 4 4 66 4 1 1 1 3 2 9 4 4 5 4 4 4 444 5 44 3 44 44 5 44 44 4 4 66666666666 2 0 000000000 55 9 55 9999 9 9 7777 9 9 9 88 88 0 0 888888 0 0 0 9 9 9 0 1 0 55 444444 2
consensus : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
Reference ( family-675 ) : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAC-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72951 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------A-AGGCAC-TTCCGCCTAAAAA
gi|72952 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT--AGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGCA------ATAGGCAC-TT-CGCCTAAAAA
gi|72953 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-A-TTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TAT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G-TTTG-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-T-TCC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTGC--------TAGGCA--TTCCGCCTAAAAA
gi|72954 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGGT-C-AGGAATGA-TAATAAAAT-A-TCA-GTGTT-CTCTTGAAGA-TAT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TCA--AT----TAGCGAGTT-GCATGCC-T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-AAC-AAACAATTGCA------ATAGGCGC-TTCCGCCTACAAA
gi|72955 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAATGA-TAATAAAAT-A-ATA-GTGTT-TGCTTGAAAA-TCT---G-TTT--TTA--ACA--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AG----TAGCGAGTT-ACATGCCTT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72956 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TAGACTC-A---------------AT-A-TTA-GTGTT-CGCTTGAAAA-TCC---G-TTT--TAA--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----AAGCGAGTT-GCATGCCCT-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TTC-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CAC-AAACCATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72957 : CCGCTTTAGCCGTGTTT-T-CTTTG--CTC-ATTTTT-TAGATTC-AGGAA-GA-TAATAAAAT-A-TTA-GTGTT-CTCTTGAAAA-TCT---G-TTT--TTA--ACT--GC-CGT--TA--CCCT-GAC-CT-----------GA-TGGT-TT--------ATCT-CCGAAT-TTA--AT----TAGCGATGT-GCATGCCCT-TT----G-CTTA-TG-TGATTTCAGTTTG--G--AGT-ACCAT-GAA------AAAAGGG-C-TCC-TG-ACCTCT-GTGA-CGTAGAAGG-TCA-CAC-AAACGTATGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72958 : CCGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTTT-TATGCCC-CGGAAT
gi|72959 : CCGCTT-AGC-GTTGTT-TTCTTTGGGCTCCAATTTT-TAGACTC-A---------------AT-A-TTA-GTGTTTCGCTTGAAAA-TCC---G-TTT--TAA--AC---GC-CGT--TAACCTCT-GTTTCT-----------GA-TGGT-T---------ATC--CCGA-T-TTA--AT-----AGCGAGTTAGCATAGCCC-TT----G-TTTA-TG-TGAATTCCGTTGGA-G--AGT-A-CAT-GAA------AA-A-GG-T-TCT-TG-ACCTCC-ATGA-CGTAGAAGG-TCA-CACAAAACCATTGCA------ATA-GCGC-TTCCGCCTAAAAA
gi|72960 : CCACTT-ACCCGTTGTT-C-CTTTT--CTC-AGTTTT-AAGATTC-ATGAATGA-TGA
gi|72961 : CCGCTT-ATCCGTTGTT-C-ATTTG--CTC-AATTTT-TAGATCC-CCGAATAA-TGAGAAAAT-A-TAT-GCGTT-CGTATGAAAA-CCT---GTTTT--TTG--GTT--GT-TGT--TT--TTTT-TTT-TTTTTGGGGGGGGGG-TGGT-TACTGTCGTCATT--CC--ATATTA--AT----TAA-----T-GCATGTCAT-TT-----------TGATGAATTCCGTTTG--G--AGT-ATCGC--AA------AA-AGGG-T-TCC-TG-ACCCCT-GTGA-CGTAG-----------------------A------ATAGGCGC-TCCCGCATAACAA
gi|72962 : CTGCTT-GTCTGCTGTT-C-CTTTA--TTC-AGTTTT-TAGATAC-GCGAATGA-TGG--AAAT-A-C-A-GT-------TT----A-TCC---A-CAT--TTT--ACT--GT-AAA--AA--ACAT-ATC-CT-----------GA-TA---T---------ATTTACCGAAT-T-----------AGCGATCT-GCATCCCCC-CT----G-TTTA-TT-TAAATTCCGTTTG--G--AGT---------------------------------GCCTCT-GTGA-CATAGAAGC-TCA-GTA-AAGCAACTGAA------GT-GACCC-TTTCACCTGAAAAt
gi|72963 : CTGCTT-GTCCGTTGTT-C-CGTTG--CTC-AGTTTA-TATATTC-AAGAATGA-TAAGTACAT-A-TAATGTATT-TA--TGAGAA-CATGGAG-TCT--TCATTACT--GT-CAT--GA--TCCC-ATT-TT-----------GA-TGTT-C---------ATT--GCGAAT-TTG--AT----TTGCAATTT-GTATACATA-GT----G-TTAA-TG-TAAA
gi|72964 : CGCTT-GGCCGTTGTT-A-TTTTG--CTC-AATTTT-TAGATTC-GTAAATGA-TAAGAAAAT-A-T---ACGTT--GTTTGGAAA-TCT---G-TTTTCTTT--ACT--GT-CGT--GA--CCCT-AT---T-----------GA-TGTT-T---------ATC--TCGAAT-TTA--AT----TAGCAAGTT-TTATGCCCT-TTTC--G-TTTACCC-TGAATTTCGTTTGGCG--AGTAACCACAAAA------AA-AGGA-C-CCC-TG-ACCTCT-ATGC-TGTAGAGGG-TCA-CCA-AAGCTATTGCATTTATTGTACACGC-TTCCGCCTAAAAA
gi|72965 : CGCTT-CGCC-TTATTCT-TTTTT--CTC-AATTTTCTTGATC-------TGA-GGATAAA---------------CGTTTGAAA--TAT---G-GTA--TTA--ACT--TC-T-T--TA--CC-T-GTT-GT-----------GA-TGGT-T---------ATC--CCGAAT-TTA--AT----CTGCGGCTT-GCAT--CCTATC----GTTTTA-TG-CTACTTCCGTTTG--GTAAGT-ACCAT-GAATAACACAG-AGAGTT-TCC-TG-ACCTCCTGTGAGCGTAGAA
gi|72966 : CGCTT-AGCCGTTGTT-T-CTTTG--CTC-AATTAT-TAGATTC-ATGATTGA-TAATTAAAT-A-TAA-ATGTT-AGTTTGAAAA-Ttggcaataaa
gi|72967 : TT-AGCCGTTGAT-T-CTGTGG-CTC-ATTTTT-TAGATTCCAGGAATGAATAATAAAATCACTTA-GTATT-CGCTTGAAAAGTCT---T-GTT--TTA--ACTCCGCACGTGCTC--CACTCGTT-CT-----------GAATGGTAT---------A-C--CCGAAT-TTA--AT----TAGCGAGTT-GCATGCCCT-TT----G--TTA-TG-TGACTTCCG-TTG--G--A-T-ACCAT-GGA------AA-AGGG-CTTCC-TGCACCTCT-GTGA-CGTAGAAGG-TCA--ACAAAACGA-TGCA------ATA-GCGCATTCCGCCTAAAAA
gi|72968 : TTGT-TAGATTC-AGGAATGA-TAATAAAAT-A-TTA-GTGTT-CGCTTGAAAA-TCT---G-TTT--T-A--ACT--GC-CGT--TA--CCCT-GTT-CT-----------GA-TGGT-T---------ATT--C-GAAT-TTA--AT----TAGGGAGTT-GCATGC--T-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA--GGG-C-TCC-TG-ACCTCC-GTGA-CGT-GAAGGTTCA-CAC-AAACGATTGCA------ATAGGCGC-TTCCGCCTAAAAA
gi|72969 : T-TAGATTC-ATGAATGA-TAATAAAAT-A-T----------------AAA-TCT---G-TTT--TTA--ACT--GT-CAT--TA--CCTT-GTT-CT-----------GA--GGT-T---------ATC--CCGAAT-TTA--AT----TAGCG
gi|72970 : GT-G---------ATC--CC-ATT-TTG--ATGTTTTAGCGAGTT-GCATGCTCT-TT----G-ATTA-TG-TGAATTCTGTTTG--G--AGT-ACCAT-GAA------AA-A-GG-C-GCC-TG-ATCTCT-GTG
gi|72971 : tgaaaatattgctgttT-ATT-TT-----------GA-TATT-T---------ATC--GCGCAT-TTG--AT----TAGCGAGTC-GCATGCCTC-TT----G-TTTA-TG-TGAATTCCGTTTG--G--AGT-ACCAT-GAA------AA-ATGA-C-CCC-TG-AACTCC-GTGA-CGTAGAAGG-TCA-CAT-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72972 : TT-TT-----------GA-TGCT-T---------ATT--GCGAAT-TTG--AT----TAGCGAGTT-GCGTGCCAT-TT----G-TTTA-TG-TAAATTCCGTTTG--A--ATG-AACAC-GAA------AA-AGGG-C-TCC-TG-ACCACC-GTGA-CGTAGAAGG-TCA-CAA-AAGCAATTACA------ATAGGCGC-TTCCGCCTAAAAA
gi|72973 : T-T---------ATC--GCGAAT-TTGTGAT----TAGTGAGTT-CCATGCCCT-TT----G-TTTA-AT-CGAATTCCGTT-G--G--AGT-ACCAT--AA------AA-AGGG-C-TCC-TG-ACATCC-GTGA-CGTAGAGGG-TCA-CAT-AAGCAATTGCA------ATAGGCGC-TTCCG
gi|72974 : --CCAAAT-ATT--AT----TTGCAGTTT-GCACGCGTT-TT----G-TTTC-AG-TGAATTTAGTTTG--G--AAT-AGTAC-AGA------AA-AGAG-C-TGAGTG-ATCTAT-GTAA-CGTAGAAGG-TCATCA--AAACA-TTGCA------ATA-GCAC-TTCCGCCTA
gi|72975 : TA--AT----TAGTGAGTT-GCATGTCCT-TTAATTG-TTTA-TA-TGAATTCAGTTTG--G--AGT-ACCAT-GAA------AA-AGGG-C-TCC-TG-ACCTCC-GTAA-CGTAGAAGG-TCA-CAT-AAGCAATTGC
gi|72976 : CC-TG-ACCTCC-GTGA-CGTAGAAGG-TCA-CA
gi|72977 : A-CAA-AAGCAATTGCA------ATAGGCGC-TTCCGCCTAAAAA