lowQualScore                  :      555  666  22 1      22  666 88888888   3 1   44            22 555          2       
lowQualScore                  :      ...  ...  .. .      ..  ... ........   . .   ..            .. ...          .       
lowQualScore                  :      222  888  44 7      00  888 00000000   0 5   11            33 888          1       
consensus                     : AAAAT-A-TTN--GA--A-GGCCGA--TTG--A--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
Reference ( gi|89313 )        : AAAAT-A-TTT--GA--A-GGCCGA--TTA--A--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89314                      : AAAAT-A-TTT--GA--A-GGCCGA--TTA--A--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89317                      : AAAAT-A-TTT--GA--A-GGCCGA--TTG--A--------ATA-T-ACT--CGACTACTTTCT--A---CAATTCTTTA-GGAGTAT
gi|89309                      : AAAGT-A-TTA--GA--A-GGCCGA--TTG--A--------GTA-T-ACT--CGATTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89310                      : AAAATTA-TTA--GA--A-GGTCGA--TTG--A--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89322                      : AAAAT-A-TTT--GA--A-GGTCAA--TTA--AAAG-----GTA-T-ACT--CGACTAGTTTCTTTA---CAATTCTTCA-GGAGTAT
gi|89316                      : AAAAA-A-TTT--AA--A-GGCTGA--TTG--A--------GAA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89318                      : AAAAT---CTA--GA--A-GGCCGA--TTG--A--------GTA-T-ATT--CGACTAGTTTCC--A---CAATTCTTCG-AGAGTAT
gi|89325                      : AAAAT-AATTT--GA--A-GGCCGA--TTG--A--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89324                      : AAAAT-AATTT--GA--A-GGCCGA--TTG--A--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89320                      : AAAATTA-TCA--AA--A-GGCCGA--TTG--A--------GTG-T-ACT--TCACAAATTTCT--A---CAATTCTTCA-GGGGTAT
gi|89326                      : AAAAT---TTA--GA--A-GGCCGAAATTATGA--------GTA-TTACT--CGACTAGTTTCT--A---C-ATTTTTCAGGGAGT
gi|89327                      : AAAAT-A-TCT--CA--A-G-CCGA--TTG--A--------GTA-T-ACT--CGACTAGTTTCT--A---C
gi|89321                      : AAAAT-A-TTA--GA--A-GGCCGA--TTG--A--------GTA-T--CT--CGACTAGTTTC
gi|89328                      : AAAAT-A-TTA--GA--A-GGCCGA--TTG--A--------GTA-------------------T--A---CAATTCTTCA-GGAGTAT
gi|89329                      : AAAAT-A-TCA--CA--A-AGCCAA--TTT--ATTGTACATGTA-T-ACT--CAACTAGTTTCT--G---TAATTCCTCA-AGTGTAT
gi|89315                      : AAAAT-T-TTT--AA--AAGGCCAT--TTG--A--------GTA-T-ACT--CGACTAGTTTC
gi|89330                      : AGAAT-A-TCA--GA--A-G-CCAA--TTG--A--------TTA-T-ACT--CGCCTATTTTTT--A---CATTTCGTCA-GGAACAT
gi|89312                      : AAAGT-A-TCA--AA--A-GGCCGA--TTG--A--------GTA-T-ACT--CGATTAG
gi|89311                      :  AAAT-A-TATCAAA--A-GTCCGA--TCG--A--------GTA-T-ACT--CGACTAGTTTCT--A---
gi|89319                      :   AAT-A-TAT--GATAA-GGCCGA--TAG--A--------GTA-T-ACT--CGACTAGTTTTT--A---CAATTCTGCA-GGAGTAT
gi|89323                      :               A--A-AGCCAA--TTG--A--------GTA-T-ACT--CGACTAGTTTCT--G---TAATTCTTCA-GAAGAAT
gi|89332                      :     aaaaaatcacA--A-AGCTGA--TTG--A--------GTA-T-ACT--CAACTAATTTCT--A---TAATTATTCA-
gi|89335                      :        aatttcac--A-GGCCGA--TTG--A--------GTA-T-ACT--CGACTAGTTTCA--A---CAATTCTTCA-GGAGTAT
gi|89336                      :                ttaagGCCGA--TTG--A--------GTA-T-ACT--CAACTAGTTTCT--A---CCAT
gi|89333                      :                      CCGA--TCG--A--------GTA-T-ATT--CGACTAGTTTCT--A---CATTTCT
gi|89334                      :            atatcaaaatCCGA--TCG--A--------GTA-T-ATT--CGACTAGTTTCT--A---CA
gi|89331                      :              atatcaaaatGA--TTG--A--------GTA-T-GCT--AGACTAGTTTCT--G---AAATTCTTCA-GGAGTAT





Alignments
lowQualScore                  :         1  3 3  1  22 1      222 1   77777777   2 1   33            22 555          2       
lowQualScore                  :         .  . .  .  .. .      ... .   ........   . .   ..            .. ...          .       
lowQualScore                  :         7  3 2  0  11 5      555 4   77777777   9 4   99            22 666          0       
consensus                     :      AAA-AT-A-TTAGA--A-GGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
Reference ( family-655 )      :      AAA-AT-A-TTNGA--A-GGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89309                      :      AAA-GT-A-TTAGA--A-GGCCGA---T-TGA--------GTA-T-ACT--CGATTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89310                      :      AAA-ATTA-TTAGA--A-GGTCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89311                      :      AAATAT-A-TCAAA--A-GTCCGA---T-CGA--------GTA-T-ACT--CGACTAGTTTCT--A---
gi|89312                      :      AAA-GT-A-TCAAA--A-GGCCGA---T-TGA--------GTA-T-ACT--CGATTAG
gi|89313                      :      AAA-AT-A-TTTGA--A-GGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89314                      :      AAA-AT-A-TTTGA--A-GGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89315                      :      AAA-AT-T-TTTAA--AAGGCCAT---T-TGA--------GTA-T-ACT--CGACTAGTTTC
gi|89316                      :      AAA-AA-A-TTTAA--A-GGCTGA---T-TGA--------GAA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89317                      :      AAA-AT-A-TTTGA--A-GGCCGA---T-TGA--------ATA-T-ACT--CGACTACTTTCT--A---CAATTCTTTA-GGAGTAT
gi|89318                      :      AAA-AT---CTAGA--A-GGCCGA---T-TGA--------GTA-T-ATT--CGACTAGTTTCC--A---CAATTCTTCG-AGAGTAT
gi|89319                      :        A-AT-A-TATGATAA-GGCCGA---T-AGA--------GTA-T-ACT--CGACTAGTTTTT--A---CAATTCTGCA-GGAGTAT
gi|89320                      :      AAA-ATTA-TCAAA--A-GGCCGA---T-TGA--------GTG-T-ACT--TCACAAATTTCT--A---CAATTCTTCA-GGGGTAT
gi|89321                      :      AAA-AT-A-TTAGA--A-GGCCGA---T-TGA--------GTA-T--CT--CGACTAGTTTC
gi|89322                      :      AAA-AT-A-TTTGA--A-GGTCAA---T-TAAAAG-----GTA-T-ACT--CGACTAGTTTCTTTA---CAATTCTTCA-GGAGTAT
gi|89323                      :      AAA-AA-A-TCACA--A-AGCCAA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--G---TAATTCTTCA-GAAGAAT
gi|89324                      :      AAA-AT-AATTTGA--A-GGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89325                      :      AAA-AT-AATTTGA--A-GGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89326                      :      AAA-AT---TTAGA--A-GGCCGAAATTATGA--------GTA-TTACT--CGACTAGTTTCT--A---C-ATTTTTCAGGGAGT
gi|89327                      :      AAA-AT-A-TCTCA--A-G-CCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---C
gi|89328                      :      AAA-AT-A-TTAGA--A-GGCCGA---T-TGA--------GTA-------------------T--A---CAATTCTTCA-GGAGTAT
gi|89329                      :      AAA-AT-A-TCACA--A-AGCCAA---T-TTATTGTACATGTA-T-ACT--CAACTAGTTTCT--G---TAATTCCTCA-AGTGTAT
gi|89330                      :      AGA-AT-A-TCAGA--A-G-CCAA---T-TGA--------TTA-T-ACT--CGCCTATTTTTT--A---CATTTCGTCA-GGAACAT
gi|89331                      :                            GA---T-TGA--------GTA-T-GCT--AGACTAGTTTCT--G---AAATTCTTCA-GGAGTAT
gi|89332                      :        agtattataaaA--A-AGCTGA---T-TGA--------GTA-T-ACT--CAACTAATTTCT--A---TAATTATTCA-
gi|89333                      : aatttcac-AT-A-TCAAA--A-T-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CATTTCT
gi|89334                      :         -AT-A-TCAAA--A-T-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CA
gi|89335                      :              -TTAAG--A-GGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCA--A---CAATTCTTCA-GGAGTAT
gi|89336                      :                         GCCGA---T-TGA--------GTA-T-ACT--CAACTAGTTTCT--A---CCAT





Alignments
lowQualScore                  :    1  3 3  1 0        222 1   77777777   2 1   33            22 555          2       
lowQualScore                  :    .  . .  . .        ... .   ........   . .   ..            .. ...          .       
lowQualScore                  :    5  1 0  5 3        555 4   77777777   9 4   99            22 666          0       
consensus                     : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
Reference ( family-655 )      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89309                      : AAA-GT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89310                      : AAA-ATTA-TT-AGAAGGTCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89311                      : AAATAT-A-TC-AAAAGTCCGA---T-CGA--------GTA-T-ACT--CGACTAGTTTCT--A---
gi|89312                      : AAA-GT-A-TC-AAAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAG
gi|89313                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89314                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89315                      : AAA-AT-T-TTTAAAAGGCCAT---T-TGA--------GTA-T-ACT--CGACTAGTTTC
gi|89316                      : AAA-AA-A-TT-TAAAGGCTGA---T-TGA--------GAA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89317                      : AAA-AT-A-TT-TGAAGGCCGA---T-TGA--------ATA-T-ACT--CGACTACTTTCT--A---CAATTCTTTA-GGAGTAT
gi|89318                      : AAA-AT---CT-AGAAGGCCGA---T-TGA--------GTA-T-ATT--CGACTAGTTTCC--A---CAATTCTTCG-AGAGTAT
gi|89319                      : AAT-AT-A-TG-ATAAGGCCGA---T-AGA--------GTA-T-ACT--CGACTAGTTTTT--A---CAATTCTGCA-GGAGTAT
gi|89320                      : AAA-ATTA-TC-AAAAGGCCGA---T-TGA--------GTG-T-ACT--TCACAAATTTCT--A---CAATTCTTCA-GGGGTAT
gi|89321                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T--CT--CGACTAGTTTC
gi|89322                      : AAA-AT-A-TT-TGAAGGTCAA---T-TAAAAG-----GTA-T-ACT--CGACTAGTTTCTTTA---CAATTCTTCA-GGAGTAT
gi|89323                      : AAA-AA-A-TC-ACAAAGCCAA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--G---TAATTCTTCA-GAAGAAT
gi|89324                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89325                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89326                      : AAA-AT---TT-AGAAGGCCGAAATTATGA--------GTA-TTACT--CGACTAGTTTCT--A---C-ATTTTTCAGGGAGT
gi|89327                      : AAA-AT-A-TC-TCAAG-CCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---C
gi|89328                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-------------------T--A---CAATTCTTCA-GGAGTAT
gi|89329                      : AAA-AT-A-TC-ACAAAGCCAA---T-TTATTGTACATGTA-T-ACT--CAACTAGTTTCT--G---TAATTCCTCA-AGTGTAT
gi|89330                      : AGA-AT-A-TC-AGAAG-CCAA---T-TGA--------TTA-T-ACT--CGCCTATTTTTT--A---CATTTCGTCA-GGAACAT
gi|89331                      :   A-GT-A-TT-ATAAAG---A---T-TGA--------GTA-T-GCT--AGACTAGTTTCT--G---AAATTCTTCA-GGAGTAT
gi|89332                      :   A-AT-T-TC-ACAAAGCTGA---T-TGA--------GTA-T-ACT--CAACTAATTTCT--A---TAATTATTCA-
gi|89333                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CATTTCT
gi|89334                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CA
gi|89335                      :         -TT-AAGAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCA--A---CAATTCTTCA-GGAGTAT
gi|89336                      :                  GCCGA---T-TGA--------GTA-T-ACT--CAACTAGTTTCT--A---CCAT





Alignments
lowQualScore                  :    1  3 3  1 0        222 1   77777777   2 1   33            22 555          2       
lowQualScore                  :    .  . .  . .        ... .   ........   . .   ..            .. ...          .       
lowQualScore                  :    5  1 0  5 3        555 4   77777777   9 4   99            22 666          0       
consensus                     : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
Reference ( family-655 )      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89309                      : AAA-GT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89310                      : AAA-ATTA-TT-AGAAGGTCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89311                      : AAATAT-A-TC-AAAAGTCCGA---T-CGA--------GTA-T-ACT--CGACTAGTTTCT--A---
gi|89312                      : AAA-GT-A-TC-AAAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAG
gi|89313                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89314                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89315                      : AAA-AT-T-TTTAAAAGGCCAT---T-TGA--------GTA-T-ACT--CGACTAGTTTC
gi|89316                      : AAA-AA-A-TT-TAAAGGCTGA---T-TGA--------GAA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89317                      : AAA-AT-A-TT-TGAAGGCCGA---T-TGA--------ATA-T-ACT--CGACTACTTTCT--A---CAATTCTTTA-GGAGTAT
gi|89318                      : AAA-AT---CT-AGAAGGCCGA---T-TGA--------GTA-T-ATT--CGACTAGTTTCC--A---CAATTCTTCG-AGAGTAT
gi|89319                      : AAT-AT-A-TG-ATAAGGCCGA---T-AGA--------GTA-T-ACT--CGACTAGTTTTT--A---CAATTCTGCA-GGAGTAT
gi|89320                      : AAA-ATTA-TC-AAAAGGCCGA---T-TGA--------GTG-T-ACT--TCACAAATTTCT--A---CAATTCTTCA-GGGGTAT
gi|89321                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T--CT--CGACTAGTTTC
gi|89322                      : AAA-AT-A-TT-TGAAGGTCAA---T-TAAAAG-----GTA-T-ACT--CGACTAGTTTCTTTA---CAATTCTTCA-GGAGTAT
gi|89323                      : AAA-AA-A-TC-ACAAAGCCAA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--G---TAATTCTTCA-GAAGAAT
gi|89324                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89325                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89326                      : AAA-AT---TT-AGAAGGCCGAAATTATGA--------GTA-TTACT--CGACTAGTTTCT--A---C-ATTTTTCAGGGAGT
gi|89327                      : AAA-AT-A-TC-TCAAG-CCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---C
gi|89328                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-------------------T--A---CAATTCTTCA-GGAGTAT
gi|89329                      : AAA-AT-A-TC-ACAAAGCCAA---T-TTATTGTACATGTA-T-ACT--CAACTAGTTTCT--G---TAATTCCTCA-AGTGTAT
gi|89330                      : AGA-AT-A-TC-AGAAG-CCAA---T-TGA--------TTA-T-ACT--CGCCTATTTTTT--A---CATTTCGTCA-GGAACAT
gi|89331                      :   A-GT-A-TT-ATAAAG---A---T-TGA--------GTA-T-GCT--AGACTAGTTTCT--G---AAATTCTTCA-GGAGTAT
gi|89332                      :   A-AT-T-TC-ACAAAGCTGA---T-TGA--------GTA-T-ACT--CAACTAATTTCT--A---TAATTATTCA-
gi|89333                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CATTTCT
gi|89334                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CA
gi|89335                      :         -TT-AAGAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCA--A---CAATTCTTCA-GGAGTAT
gi|89336                      :                  GCCGA---T-TGA--------GTA-T-ACT--CAACTAGTTTCT--A---CCAT


blockSeqs                     :    T  T A  T          AAT A   TTGTACAT   C T   TA            TT TAA          G
blockSeqs                     :    .  T A  .          .   .   AAG        C .   TA            .  TAA          .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .            .
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .             
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .             
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .             
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .             
blockSeqs                     :    .  . .  .          .   .   .          . .   .             .  .             
blockSeqs                     :    .  . .  .          .   .   .          . .   .                              
blockSeqs                     :         .  .          .   .   .          . .   .                              
blockSeqs                     :                       .   .   .          . .   .                              


blockSeqCons                  : 
originalCons                  : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
finalCons                     : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT





Alignments
lowQualScore                  :    1  3 3  1 0        222 1   77777777   2 1   33            22 555          2       
lowQualScore                  :    .  . .  . .        ... .   ........   . .   ..            .. ...          .       
lowQualScore                  :    5  1 0  5 3        555 4   77777777   9 4   99            22 666          0       
consensus                     : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
Reference ( family-655 )      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89309                      : AAA-GT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89310                      : AAA-ATTA-TT-AGAAGGTCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89311                      : AAATAT-A-TC-AAAAGTCCGA---T-CGA--------GTA-T-ACT--CGACTAGTTTCT--A---
gi|89312                      : AAA-GT-A-TC-AAAAGGCCGA---T-TGA--------GTA-T-ACT--CGATTAG
gi|89313                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89314                      : AAA-AT-A-TT-TGAAGGCCGA---T-TAA--------GTA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89315                      : AAA-AT-T-TTTAAAAGGCCAT---T-TGA--------GTA-T-ACT--CGACTAGTTTC
gi|89316                      : AAA-AA-A-TT-TAAAGGCTGA---T-TGA--------GAA-T-ACT--CGACTAGTTTCT--A---CAATTCTTCA-GGAGTAT
gi|89317                      : AAA-AT-A-TT-TGAAGGCCGA---T-TGA--------ATA-T-ACT--CGACTACTTTCT--A---CAATTCTTTA-GGAGTAT
gi|89318                      : AAA-AT---CT-AGAAGGCCGA---T-TGA--------GTA-T-ATT--CGACTAGTTTCC--A---CAATTCTTCG-AGAGTAT
gi|89319                      : AAT-AT-A-TG-ATAAGGCCGA---T-AGA--------GTA-T-ACT--CGACTAGTTTTT--A---CAATTCTGCA-GGAGTAT
gi|89320                      : AAA-ATTA-TC-AAAAGGCCGA---T-TGA--------GTG-T-ACT--TCACAAATTTCT--A---CAATTCTTCA-GGGGTAT
gi|89321                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-T--CT--CGACTAGTTTC
gi|89322                      : AAA-AT-A-TT-TGAAGGTCAA---T-TAAAAG-----GTA-T-ACT--CGACTAGTTTCTTTA---CAATTCTTCA-GGAGTAT
gi|89323                      : AAA-AA-A-TC-ACAAAGCCAA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--G---TAATTCTTCA-GAAGAAT
gi|89324                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89325                      : AAA-AT-AATT-TGAAGGCCGA---T-TGA--------GAACT-ACTTACGACTAGTTTCT--ATAACAATTCTTCA-GGAGTAT
gi|89326                      : AAA-AT---TT-AGAAGGCCGAAATTATGA--------GTA-TTACT--CGACTAGTTTCT--A---C-ATTTTTCAGGGAGT
gi|89327                      : AAA-AT-A-TC-TCAAG-CCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCT--A---C
gi|89328                      : AAA-AT-A-TT-AGAAGGCCGA---T-TGA--------GTA-------------------T--A---CAATTCTTCA-GGAGTAT
gi|89329                      : AAA-AT-A-TC-ACAAAGCCAA---T-TTATTGTACATGTA-T-ACT--CAACTAGTTTCT--G---TAATTCCTCA-AGTGTAT
gi|89330                      : AGA-AT-A-TC-AGAAG-CCAA---T-TGA--------TTA-T-ACT--CGCCTATTTTTT--A---CATTTCGTCA-GGAACAT
gi|89331                      :   A-GT-A-TT-ATAAAG---A---T-TGA--------GTA-T-GCT--AGACTAGTTTCT--G---AAATTCTTCA-GGAGTAT
gi|89332                      :   A-AT-T-TC-ACAAAGCTGA---T-TGA--------GTA-T-ACT--CAACTAATTTCT--A---TAATTATTCA-
gi|89333                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CATTTCT
gi|89334                      :    -AT-A-TC-AAAAT-CCGA---T-CGA--------GTA-T-ATT--CGACTAGTTTCT--A---CA
gi|89335                      :         -TT-AAGAGGCCGA---T-TGA--------GTA-T-ACT--CGACTAGTTTCA--A---CAATTCTTCA-GGAGTAT
gi|89336                      :                  GCCGA---T-TGA--------GTA-T-ACT--CAACTAGTTTCT--A---CCAT