lowQualScore                  :                                                                                       111                 
lowQualScore                  :     1   1  555     1    1   1 99   1       22 555  333 555555555 1 44   66    1   33  111     1  5        
lowQualScore                  :     .   .  ...     .    .   . ..   .       .. ...  ... ......... . ..   ..    .   ..  ...     .  .        
lowQualScore                  :     7   7  000     6    6   6 00   4       00 888  666 999999999 2 00   66    5   77  111     5  1        
consensus                     : TATA-CTA-TT---AAATT-AACG-GAG-T-GAAA-TTTTCTA--GC--CGAC-T---------TGCCGCTG-AGCCG-ATA--AT-C-GTCAG-GAATATTATGT
Reference ( gi|121749 )       : TATA-CTA-TT---AAATT-AACG-GAG-T-AAAA-TTTTCTA--GC--CGAC-T---------TGCCGCTG-GGCCG-ATA--AT-T-GTCAG-GAGTATTATGT
gi|121748                     : TATA-CTA-GT---AAATT-AACG-GAG-T-GAAA-TTTCCTA--AC--CGAC-T---------TGCTGCTG-AGCCG-ATA--AT-C-GTCAG-GAATATTATGT
gi|121751                     : TATA-CTA-TT---AGATT-ATCG-GAG-T-GAAA-TATTCTA--GC--CGAT-T---------TGCGGCTG-AGCCA-ATA--AT-C-GTCAG-GAATATTATGT
gi|121750                     : TATA-CTA-TT---A---T-AACG-GAG-T-GAAA-TTTTCTA--GC--CGAC-T---------TGCATCTG-AGCCG-ATA--AT-C-ATCAG-GGATATTATGT
gi|121754                     : TATA-CTA-TC---AAATT-AATG-GAG-A-GACA-TTTTCTA--G---CGACTT---------TGCCGCTG-AGCCG-ATA--AT-C-GTCAG-GAATATTATGT
gi|121752                     : TATA-CTA-TT---AATTTTAACG-GAG-T-GCAA-TTTTCTA--GC--CGAC-T---------TGCAACTG-AGCCG-ATA--AT-C-GTTAG-AAATATTATGT
gi|121753                     : TATG-CTA-TC---AAGTT-AACG-GAG-T-GAAA-TTTTCTA--GC--CGAC-T---------AGCAGCTG-AGCCA-ATA--AT-C-GTCAG-GAATA
gi|121756                     : TATA-CTT-TT---AAATT-AGCG-GAG-T-GAAA-TTTTCTA--GA--CGTT-T---------TACCTCTG-AGCCG-ACA--AT-T-GCCAG-GGATATTATGT
gi|121755                     : TATA-CTA-TC---AAATT-AACC-GAGAT-GAAA-TTT-CTA--GC--CGAC-T---------TGCAACTG-AGCCA-ATA--AT-C-GTCAG-GAATA
gi|121758                     : TATA-CTA-TT---AAATT-AACGCGAG-TGGAAA-TTTTCTA--TT--CGGCTT---------TCCCGCTGAGGCC--ATA--AT-A-GTCAG-AAATATTA
gi|121757                     : TATG-CTA-TT---AAACT-TACG-GAC-T-GAAA-TTTTCTG--GA--CG-T-T---------TACCTCTG-AGTCG-ATA--AT-C-GTCAG-TAACATTATGT
gi|121759                     : TATA-ATG-TT---AA-TT-AACG-GAC-T-GAAA-TTTTCTA--GA--CGTT-T---------TACGTCTG-AGCCG-ACA--AT-T-GTCAG-GAAAAGTATGT
gi|121762                     : TATG-CTA-CT---AAATT-AATG-GAC-T-GAAA-TT--CTA--GA--TGTT-T---------TACCTCTG-TGCCG-ATA--AT-C-GTCAG-GATTATTA
gi|121760                     : TATA-CTG-CT---AAATT-AACG-GAC-T-GAGA-TTTTCTA--GG--CGTT-T---------TAACTATG-AGCC---TA--AT-C-GTCAG-GCATATTATG
gi|121763                     : TATAACTA-TT---AA-TT-AACG-GAG-T-GAAA-TTTTCTA--TT--CG-C-T---------T-CCGCTG-AGCC--AT---AT-A-GTCAA-AAATATT
gi|121761                     : TATA-CTA-TA---AAATT-AACG-GGC-T-GAAA-TTTTCTA--GA--C-AT-T---------TG----TA-AGTTG-ATA--AT-C-GTCAG-GAATATCA
gi|121765                     : TACA-CTAATT---TAATT-AACG-GAT-T-GAAA-ATTTCTG--TC--TGAC-T---------TGCCGCTG-AGTC
gi|121764                     : TATA-CTA-TT---AAATT-AACG-GAG-T-GAAA-TTTTCTA--G
gi|121766                     :  ATT-CTA-TT---AAATC-AACT-CAT-T-GAAA-TTTTATA--TCTACGTT-T---------CACCTCTG-AGCCG-ATACTAT-A-ATCAG-GAATATCATGT
gi|121767                     :   TA-TTG-TT---TAATT-AACG-GAG-T-GAAA-TTTTCTA--GC--CGAC-T---------TGCAGCTG-AGCCG-ATA--AT-C-GTCAG-GAATATTATGT
gi|121768                     :   TA-CTA-TT---AAATT-AACG-GAG-T-GAAA-ATTTCTA--TT--CGGC-T---------TTCCGCTG-AGCCG-GT---AT-A-GTCAG-AAATATTA
gi|121769                     :   TA-CTG-T----ACATC-AACG-GAG-T-GAAA-TTTTCTA--GC--CGTT-T---------TACCTCTG-AGCCG-ATA--AA-T-ATCAG-GAATATTATAT
gi|121770                     :   TG-CTA-TTTA-AAATT-AACG-GAG-T-CAAA-TTTTCTA--GC--CGAC-CAACTGATGATGCAGCTG-AGGCG-ATA--ATGC-GTCAGAAAGTAT
gi|121771                     :   TA-CTA-TT---AAATT-AACG-GAG-T-GAAATTTTTCTATTG---CGGC-T---------ATCCGCTG-AGCCGAATA--AT-GAGTCAG-AAATA
gi|121772                     :   TA-CTA-CTTAGAAATT-AACG-GAG-TGAAAA-TTTTCTA--TT--CAGC-T---------TTC--CTG-AGCAG-ATAC-AT-A-GTCAG-AAATATTA
gi|121773                     :            ---AAATT-AACG-G---T-GAAA-TTTTCTA--TT--CGGA-T---------TTCCGCTG-AGCCG-ATA--AT-G-GTCAG-AAGTATTACGT
gi|121775                     :                                 AAA-TTTTCT----T--CGAT-T---------CGCCGCTA-G-CCG-ATA--AT-C-GTCA--GAATATTATAT
gi|121774                     :                                   A-TTTTCTA--GA--CGAT-T---------TACATCCC-AGCCG-ATT--AT-TCGTCAG-GGATTTTATGT
gi|121776                     :                     aaatcaaaagactgc-TTTTCTA--GC--CGAC-T---------TGCAGCTG-AGCCG-ATA--AT-C-GTCTG-GAATATTATGT





Alignments
lowQualScore                  :     1   1  444     1    1   1  2   1       11 333  2  555555555 22 444        1 1  33  3         1        
lowQualScore                  :     .   .  ...     .    .   .  .   .       .. ...  .  ......... .. ...        . .  ..  .         .        
lowQualScore                  :     6   6  666     5    5   5  9   4       99 444  8  777777777 22 666        5 5  55  0         5        
consensus                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
Reference ( family-643 )      : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121748                     : TATA-CTA-GT---AAATT-AACG-GAG-TG-AAA-TTTCCTA--AC--CGACT---------T-GCT-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121749                     : TATA-CTA-TT---AAATT-AACG-GAG-TA-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGGGCCG-A-TA--AT-TGTCAGGAG-TATTATGT
gi|121750                     : TATA-CTA-TT---A---T-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-TCTGAGCCG-A-TA--AT-CATCAGGGA-TATTATGT
gi|121751                     : TATA-CTA-TT---AGATT-ATCG-GAG-TG-AAA-TATTCTA--GC--CGATT---------T-GCG-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121752                     : TATA-CTA-TT---AATTTTAACG-GAG-TG-CAA-TTTTCTA--GC--CGACT---------T-GCA-ACTGAGCCG-A-TA--AT-CGTTAGAAA-TATTATGT
gi|121753                     : TATG-CTA-TC---AAGTT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------A-GCA-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121754                     : TATA-CTA-TC---AAATT-AATG-GAG-AG-ACA-TTTTCTA--GC---GACT---------TTGCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121755                     : TATA-CTA-TC---AAATT-AACC-GAGATG-AAA-TTT-CTA--GC--CGACT---------T-GCA-ACTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121756                     : TATA-CTT-TT---AAATT-AGCG-GAG-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACC-TCTGAGCCG-A-CA--AT-TGCCAGGGA-TATTATGT
gi|121757                     : TATG-CTA-TT---AAACT-TACG-GAC-TG-AAA-TTTTCTG--GA--CG-TT---------T-ACC-TCTGAGTCG-A-TA--AT-CGTCAGTAA-CATTATGT
gi|121758                     : TATA-CTA-TT---AAATT-AACGCGAG-TGGAAA-TTTTCTA--TT--CGGCT---------T-TCCCGCTGAGGCC-A-TA--AT-AGTCAGAAA-TATTA
gi|121759                     : TATA-ATG-TT---AA-TT-AACG-GAC-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACG-TCTGAGCCG-A-CA--AT-TGTCAGGAA-AAGTATGT
gi|121760                     : TATA-CTG-CT---AAATT-AACG-GAC-TG-AGA-TTTTCTA--GG--CGTTT---------T-AAC-TATGAGCC----TA--AT-CGTCAGGCA-TATTATG
gi|121761                     : TATA-CTA-TA---AAATT-AACG-GGC-TG-AAA-TTTTCTA--GA--C-ATT---------T-G-----TAAGTTG-A-TA--AT-CGTCAGGAA-TATCA
gi|121762                     : TATG-CTA-CT---AAATT-AATG-GAC-TG-AAA-TT--CTA--GA--TGTTT---------T-ACC-TCTGTGCCG-A-TA--AT-CGTCAGGAT-TATTA
gi|121763                     : TATAACTA-TT---AA-TT-AACG-GAG-TG-AAA-TTTTCTA--TT--CG-CT---------T--CC-GCTGAGCC--A-T---AT-AGTCAAAAA-TATT
gi|121764                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--G
gi|121765                     : TACA-CTAATT---TAATT-AACG-GAT-TG-AAA-ATTTCTG--TC--TGACT---------T-GCC-GCTGAGTC
gi|121766                     :  ATT-CTA-TT---AAATC-AACT-CAT-TG-AAA-TTTTATA--TCTACGTTT---------C-ACC-TCTGAGCCG-A-TACTAT-AATCAGGAA-TATCATGT
gi|121767                     :   TA-TTG-TT---TAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121768                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAA-ATTTCTA--TT--CGGCT---------T-TCC-GCTGAGCCG-G-T---AT-AGTCAGAAA-TATTA
gi|121769                     :   TA-CTG-T----ACATC-AACG-GAG-TG-AAA-TTTTCTA--GC--CGTTT---------T-ACC-TCTGAGCCG-A-TA--AA-TATCAGGAA-TATTATAT
gi|121770                     :   TG-CTA-TTTA-AAATT-AACG-GAG-TC-AAA-TTTTCTA--GC--CGACCAACTGATGAT-GCA-GCTGAGGCG-A-TA--ATGCGTCAGAAAGTAT
gi|121771                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAATTTTTCTATTG---CGGCT---------A-TCC-GCTGAGCCGAA-TA--ATGAGTCAGAAA-TA
gi|121772                     :   TA-CTA-CTTAGAAATT-AACG-GAG-TGAAAA-TTTTCTA--TT--CAGCT---------T-TC---CTGAGCAG-A-TAC-AT-AGTCAGAAA-TATTA
gi|121773                     :            ---AAATT-AACG-G---TG-AAA-TTTTCTA--TT--CGGAT---------T-TCC-GCTGAGCCG-A-TA--AT-GGTCAGAAG-TATTACGT
gi|121774                     :            ---AAATC-AAAA-GAC-TG-CA--TTTTCTA--GA--CGATT---------T-ACA-TCCCAGCCG-ATTA--TT-CGTCAGGGA-TTTTATGT
gi|121775                     :                                -AAA-TTTTCT----T--CGATT---------C-GCC-GCT-AGCCG-A-TA--AT-CGTCA-GAA-TATTATAT
gi|121776                     :                                    -TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCTGGAA-TATTATGT





Alignments
lowQualScore                  :     1   1  444     1    1   1  2   1       11 333  2  555555555 22 444        1 1  33  3         1        
lowQualScore                  :     .   .  ...     .    .   .  .   .       .. ...  .  ......... .. ...        . .  ..  .         .        
lowQualScore                  :     6   6  666     5    5   5  9   4       99 444  8  777777777 22 666        5 5  55  0         5        
consensus                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
Reference ( family-643 )      : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121748                     : TATA-CTA-GT---AAATT-AACG-GAG-TG-AAA-TTTCCTA--AC--CGACT---------T-GCT-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121749                     : TATA-CTA-TT---AAATT-AACG-GAG-TA-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGGGCCG-A-TA--AT-TGTCAGGAG-TATTATGT
gi|121750                     : TATA-CTA-TT---A---T-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-TCTGAGCCG-A-TA--AT-CATCAGGGA-TATTATGT
gi|121751                     : TATA-CTA-TT---AGATT-ATCG-GAG-TG-AAA-TATTCTA--GC--CGATT---------T-GCG-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121752                     : TATA-CTA-TT---AATTTTAACG-GAG-TG-CAA-TTTTCTA--GC--CGACT---------T-GCA-ACTGAGCCG-A-TA--AT-CGTTAGAAA-TATTATGT
gi|121753                     : TATG-CTA-TC---AAGTT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------A-GCA-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121754                     : TATA-CTA-TC---AAATT-AATG-GAG-AG-ACA-TTTTCTA--GC---GACT---------TTGCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121755                     : TATA-CTA-TC---AAATT-AACC-GAGATG-AAA-TTT-CTA--GC--CGACT---------T-GCA-ACTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121756                     : TATA-CTT-TT---AAATT-AGCG-GAG-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACC-TCTGAGCCG-A-CA--AT-TGCCAGGGA-TATTATGT
gi|121757                     : TATG-CTA-TT---AAACT-TACG-GAC-TG-AAA-TTTTCTG--GA--CG-TT---------T-ACC-TCTGAGTCG-A-TA--AT-CGTCAGTAA-CATTATGT
gi|121758                     : TATA-CTA-TT---AAATT-AACGCGAG-TGGAAA-TTTTCTA--TT--CGGCT---------T-TCCCGCTGAGGCC-A-TA--AT-AGTCAGAAA-TATTA
gi|121759                     : TATA-ATG-TT---AA-TT-AACG-GAC-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACG-TCTGAGCCG-A-CA--AT-TGTCAGGAA-AAGTATGT
gi|121760                     : TATA-CTG-CT---AAATT-AACG-GAC-TG-AGA-TTTTCTA--GG--CGTTT---------T-AAC-TATGAGCC----TA--AT-CGTCAGGCA-TATTATG
gi|121761                     : TATA-CTA-TA---AAATT-AACG-GGC-TG-AAA-TTTTCTA--GA--C-ATT---------T-G-----TAAGTTG-A-TA--AT-CGTCAGGAA-TATCA
gi|121762                     : TATG-CTA-CT---AAATT-AATG-GAC-TG-AAA-TT--CTA--GA--TGTTT---------T-ACC-TCTGTGCCG-A-TA--AT-CGTCAGGAT-TATTA
gi|121763                     : TATAACTA-TT---AA-TT-AACG-GAG-TG-AAA-TTTTCTA--TT--CG-CT---------T--CC-GCTGAGCC--A-T---AT-AGTCAAAAA-TATT
gi|121764                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--G
gi|121765                     : TACA-CTAATT---TAATT-AACG-GAT-TG-AAA-ATTTCTG--TC--TGACT---------T-GCC-GCTGAGTC
gi|121766                     :  ATT-CTA-TT---AAATC-AACT-CAT-TG-AAA-TTTTATA--TCTACGTTT---------C-ACC-TCTGAGCCG-A-TACTAT-AATCAGGAA-TATCATGT
gi|121767                     :   TA-TTG-TT---TAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121768                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAA-ATTTCTA--TT--CGGCT---------T-TCC-GCTGAGCCG-G-T---AT-AGTCAGAAA-TATTA
gi|121769                     :   TA-CTG-T----ACATC-AACG-GAG-TG-AAA-TTTTCTA--GC--CGTTT---------T-ACC-TCTGAGCCG-A-TA--AA-TATCAGGAA-TATTATAT
gi|121770                     :   TG-CTA-TTTA-AAATT-AACG-GAG-TC-AAA-TTTTCTA--GC--CGACCAACTGATGAT-GCA-GCTGAGGCG-A-TA--ATGCGTCAGAAAGTAT
gi|121771                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAATTTTTCTATTG---CGGCT---------A-TCC-GCTGAGCCGAA-TA--ATGAGTCAGAAA-TA
gi|121772                     :   TA-CTA-CTTAGAAATT-AACG-GAG-TGAAAA-TTTTCTA--TT--CAGCT---------T-TC---CTGAGCAG-A-TAC-AT-AGTCAGAAA-TATTA
gi|121773                     :            ---AAATT-AACG-G---TG-AAA-TTTTCTA--TT--CGGAT---------T-TCC-GCTGAGCCG-A-TA--AT-GGTCAGAAG-TATTACGT
gi|121774                     :            ---AAATC-AAAA-GAC-TG-CA--TTTTCTA--GA--CGATT---------T-ACA-TCCCAGCCG-ATTA--TT-CGTCAGGGA-TTTTATGT
gi|121775                     :                                -AAA-TTTTCT----T--CGATT---------C-GCC-GCT-AGCCG-A-TA--AT-CGTCA-GAA-TATTATAT
gi|121776                     :                                    -TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCTGGAA-TATTATGT


blockSeqs                     :     A   A  TAG     T    C   A  G   T       TT CTA  A  AACTGATGA TG CCG        A T  CT  G         G
blockSeqs                     :     .   .  TA      .    .   .  A   .       .  C    A  .         G  CG         . .  C   G         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    A  .         G  AT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    A  .         G  GG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    A  .         G  AA         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    A  .         G  AG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    A  .         G  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    T  .         A  AA         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    G  .         A  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    T  .         T  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  T    T  .         A  GT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    A  .         A  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  G    T  .         G  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    A  .         A  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    T  .         G  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  T    A  .         A  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    G  .         G  AG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    T  .         T  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  T    A  .         A  CT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    G  .         G  AG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  C    G  .         T  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  T    G  .         T  CG         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  T    A  .         T  AT         . .  .   .         .
blockSeqs                     :     .   .  .       .    .   .  .   .       .  A    A  .         A  CG         . .  .   .         .
blockSeqs                     :            .       .    .   .  .   .       .  T    A  .         G  AG         . .  .   .         .
blockSeqs                     :            .       .    .   .  .   .       .  C    .  .         G  .          . .  .   .         .
blockSeqs                     :                                .   .       .  .    .  .         .  .                              
blockSeqs                     :                                    .       .                                                      


blockSeqCons                  : 
originalCons                  : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
finalCons                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT





Alignments
lowQualScore                  :     1   1  444     1    1   1  2   1       11 333  2  555555555 22 444        1 1  33  3         1        
lowQualScore                  :     .   .  ...     .    .   .  .   .       .. ...  .  ......... .. ...        . .  ..  .         .        
lowQualScore                  :     6   6  666     5    5   5  9   4       99 444  8  777777777 22 666        5 5  55  0         5        
consensus                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
Reference ( family-643 )      : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121748                     : TATA-CTA-GT---AAATT-AACG-GAG-TG-AAA-TTTCCTA--AC--CGACT---------T-GCT-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121749                     : TATA-CTA-TT---AAATT-AACG-GAG-TA-AAA-TTTTCTA--GC--CGACT---------T-GCC-GCTGGGCCG-A-TA--AT-TGTCAGGAG-TATTATGT
gi|121750                     : TATA-CTA-TT---A---T-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-TCTGAGCCG-A-TA--AT-CATCAGGGA-TATTATGT
gi|121751                     : TATA-CTA-TT---AGATT-ATCG-GAG-TG-AAA-TATTCTA--GC--CGATT---------T-GCG-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121752                     : TATA-CTA-TT---AATTTTAACG-GAG-TG-CAA-TTTTCTA--GC--CGACT---------T-GCA-ACTGAGCCG-A-TA--AT-CGTTAGAAA-TATTATGT
gi|121753                     : TATG-CTA-TC---AAGTT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------A-GCA-GCTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121754                     : TATA-CTA-TC---AAATT-AATG-GAG-AG-ACA-TTTTCTA--GC---GACT---------TTGCC-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121755                     : TATA-CTA-TC---AAATT-AACC-GAGATG-AAA-TTT-CTA--GC--CGACT---------T-GCA-ACTGAGCCA-A-TA--AT-CGTCAGGAA-TA
gi|121756                     : TATA-CTT-TT---AAATT-AGCG-GAG-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACC-TCTGAGCCG-A-CA--AT-TGCCAGGGA-TATTATGT
gi|121757                     : TATG-CTA-TT---AAACT-TACG-GAC-TG-AAA-TTTTCTG--GA--CG-TT---------T-ACC-TCTGAGTCG-A-TA--AT-CGTCAGTAA-CATTATGT
gi|121758                     : TATA-CTA-TT---AAATT-AACGCGAG-TGGAAA-TTTTCTA--TT--CGGCT---------T-TCCCGCTGAGGCC-A-TA--AT-AGTCAGAAA-TATTA
gi|121759                     : TATA-ATG-TT---AA-TT-AACG-GAC-TG-AAA-TTTTCTA--GA--CGTTT---------T-ACG-TCTGAGCCG-A-CA--AT-TGTCAGGAA-AAGTATGT
gi|121760                     : TATA-CTG-CT---AAATT-AACG-GAC-TG-AGA-TTTTCTA--GG--CGTTT---------T-AAC-TATGAGCC----TA--AT-CGTCAGGCA-TATTATG
gi|121761                     : TATA-CTA-TA---AAATT-AACG-GGC-TG-AAA-TTTTCTA--GA--C-ATT---------T-G-----TAAGTTG-A-TA--AT-CGTCAGGAA-TATCA
gi|121762                     : TATG-CTA-CT---AAATT-AATG-GAC-TG-AAA-TT--CTA--GA--TGTTT---------T-ACC-TCTGTGCCG-A-TA--AT-CGTCAGGAT-TATTA
gi|121763                     : TATAACTA-TT---AA-TT-AACG-GAG-TG-AAA-TTTTCTA--TT--CG-CT---------T--CC-GCTGAGCC--A-T---AT-AGTCAAAAA-TATT
gi|121764                     : TATA-CTA-TT---AAATT-AACG-GAG-TG-AAA-TTTTCTA--G
gi|121765                     : TACA-CTAATT---TAATT-AACG-GAT-TG-AAA-ATTTCTG--TC--TGACT---------T-GCC-GCTGAGTC
gi|121766                     :  ATT-CTA-TT---AAATC-AACT-CAT-TG-AAA-TTTTATA--TCTACGTTT---------C-ACC-TCTGAGCCG-A-TACTAT-AATCAGGAA-TATCATGT
gi|121767                     :   TA-TTG-TT---TAATT-AACG-GAG-TG-AAA-TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCAGGAA-TATTATGT
gi|121768                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAA-ATTTCTA--TT--CGGCT---------T-TCC-GCTGAGCCG-G-T---AT-AGTCAGAAA-TATTA
gi|121769                     :   TA-CTG-T----ACATC-AACG-GAG-TG-AAA-TTTTCTA--GC--CGTTT---------T-ACC-TCTGAGCCG-A-TA--AA-TATCAGGAA-TATTATAT
gi|121770                     :   TG-CTA-TTTA-AAATT-AACG-GAG-TC-AAA-TTTTCTA--GC--CGACCAACTGATGAT-GCA-GCTGAGGCG-A-TA--ATGCGTCAGAAAGTAT
gi|121771                     :   TA-CTA-TT---AAATT-AACG-GAG-TG-AAATTTTTCTATTG---CGGCT---------A-TCC-GCTGAGCCGAA-TA--ATGAGTCAGAAA-TA
gi|121772                     :   TA-CTA-CTTAGAAATT-AACG-GAG-TGAAAA-TTTTCTA--TT--CAGCT---------T-TC---CTGAGCAG-A-TAC-AT-AGTCAGAAA-TATTA
gi|121773                     :            ---AAATT-AACG-G---TG-AAA-TTTTCTA--TT--CGGAT---------T-TCC-GCTGAGCCG-A-TA--AT-GGTCAGAAG-TATTACGT
gi|121774                     :            ---AAATC-AAAA-GAC-TG-CA--TTTTCTA--GA--CGATT---------T-ACA-TCCCAGCCG-ATTA--TT-CGTCAGGGA-TTTTATGT
gi|121775                     :                                -AAA-TTTTCT----T--CGATT---------C-GCC-GCT-AGCCG-A-TA--AT-CGTCA-GAA-TATTATAT
gi|121776                     :                                    -TTTTCTA--GC--CGACT---------T-GCA-GCTGAGCCG-A-TA--AT-CGTCTGGAA-TATTATGT