lowQualScore : 1
lowQualScore : 3 3 1 3333 1 444444 1 1 1 1 1 1 1 2 1 555555 4
lowQualScore : . . . .... . ...... . . . . . . . . . ...... .
lowQualScore : 3 0 5 0000 4 000000 4 4 4 4 8 8 8 0 2 888888 0
consensus : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Reference ( gi|56660 ) : TTTAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56659 : TTAAA-A-CAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56658 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAC-AG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56656 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-A-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56657 : TTAAA-G-CAATACA----AG-CTGTA------A-CTTAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56662 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAT-GG-T-ATATAATTT-G-T-AAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56661 : TTAAA-G-CAATACA----GG-CTGTA------A-CTGAC-GG-T-AAATAACTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGATATAT
gi|56664 : TTAAA-G-CAATGCA----AG-CTGTA------A-TAAGC-GG-C-AAATAATTT-G-TAAAAT-AA-ACGAACAAAT------AT-AGTGACATAT
gi|56665 : TTAAA-G-CAATACT----AG-CTGTACATGTAA-CTGAC-GG-C-AAATAATTTGG-TAAAAT-AA-AAGAACAAGT------AGAAGTGAC
gi|56666 : TTAAA-G-CAATACA----AAACTGTA------G-CTGAC-TA-C-AAATAATTT-G-TAAATA-AA-AAGAAGAAAT------AG-AGTGACATA
gi|56670 : TTAAA-G-CAA-AAA----GG-CTGTC------A-CTGAC-GG-CCAAATAATTT-G-TAAATT-AAGAAGAACAAAT------AGAAGTGA
gi|56667 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAT-GGCC-AAATATTTT-G-TAAAAT-
gi|56672 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56671 : TTAAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56669 : TTAAA-G-CAATGCA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56675 : TTAAA-G-CAATACA----AG-CTGAA------A-CTGAC-GG-C-AA
gi|56668 : TTAAA-G-CAATGCA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56676 : TTAAA-G-CAATACA----AG-TTGTA------A-CTGAC-GG-C-tttcattt
gi|56673 : TTAAA-G-CAATACATGCAAG-CTGTA------A-CTGAC-GG-T-AAATTAATT-G---AAAT-A
gi|56663 : TTAATG-TAATACA----AG-CTGTA------T-CTGAC-GG-C-AAATAATTT-G-TAAAAT--G-AATAACGGAT------AG-AGTGGCATAT
gi|56674 : TTAA-ATCAATACA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56681 : TAACG-CAATACA----AG-CTGGA------A-CTGAC-GG-C-AATAAATTT-GTTAAAAT-AA-AA-AACAAAT------AG-AGTGACATATt
gi|56678 : AA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-A-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56677 : taAA-G-CAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT----AATAACAAAT------AG-AGTGACATAT
gi|56683 : taAA-G-CAATACA----AG-CTGTA------A-CTGAC-G--C-AAATAATTT-G-TAAAAT-AA-AAGACGAAAT------AG-AGTGACATAT
gi|56682 : AA-G-CAATACA-----G-CTGTA------A-CTGACGGG-C-AAA-GATTT-G-TAAAATAAA-AAGAACAAAT------AG-AGT-ACATAT
gi|56679 : aA-G-CAATACA----AG-CTGTA------AGCTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAATAGTCTAAG-AGTGACATAT
gi|56680 : tatA-G-CAACACA----AG-CTGTA------A-CTGAC-GG-C-AAATAGTTT-A-TAATAT-AA-AAGAACAAAT------AT-AGTGACACAT
gi|56684 : tagATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTG-A-TAAAAT-AA-AATAACAAAT------AA-AGT
gi|56685 : ------A-CTGAC-GG-C-AAATAATTT-G-AAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Alignments
lowQualScore : 2222 1 333333 1 1 1 1 1 1 1 1 0 555555 3
lowQualScore : .... . ...... . . . . . . . . . ...... .
lowQualScore : 9999 4 888888 3 3 3 3 7 7 7 9 7 555555 8
consensus : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Reference ( family-625 ) : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56656 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-A-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56657 : TTAAAGCAATACA----AG-CTGTA------A-CTTAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56658 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-AG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56659 : TTAAAACAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56660 : TTTAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56661 : TTAAAGCAATACA----GG-CTGTA------A-CTGAC-GG-T-AAATAACTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGATATAT
gi|56662 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GG-T-ATATAATTT-G-T-AAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56663 : TTAATGTAATACA----AG-CTGTA------T-CTGAC-GG-C-AAATAATTT-G-TAAAAT--G-AATAACGGAT------AG-AGTGGCATAT
gi|56664 : TTAAAGCAATGCA----AG-CTGTA------A-TAAGC-GG-C-AAATAATTT-G-TAAAAT-AA-ACGAACAAAT------AT-AGTGACATAT
gi|56665 : TTAAAGCAATACT----AG-CTGTACATGTAA-CTGAC-GG-C-AAATAATTTGG-TAAAAT-AA-AAGAACAAGT------AGAAGTGAC
gi|56666 : TTAAAGCAATACA----AAACTGTA------G-CTGAC-TA-C-AAATAATTT-G-TAAATA-AA-AAGAAGAAAT------AG-AGTGACATA
gi|56667 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GGCC-AAATATTTT-G-TAAAAT-
gi|56668 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56669 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-Atttcattt
gi|56670 : TTAAAGCAA-AAA----GG-CTGTC------A-CTGAC-GG-CCAAATAATTT-G-TAAATT-AAGAAGAACAAAT------AGAAGTGA
gi|56671 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56672 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56673 : TTAAAGCAATACATGCAAG-CTGTA------A-CTGAC-GG-T-AAATTAATT-G---AAAT-A
gi|56674 : TTAAATCAATACA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56675 : TTAAAGCAATACA----AG-CTGAA------A-CTGAC-GG-C-AAt
gi|56676 : TTAAAGCAATACA----AG-TTGTA------A-CTGAC-GG-C-
gi|56677 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT----AATAACAAAT------AG-AGTGACATAT
gi|56678 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-A-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56679 : TATAGCAATACA----AG-CTGTA------AGCTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAATAGTCTAAG-AGTGACATAT
gi|56680 : TAGAGCAACACA----AG-CTGTA------A-CTGAC-GG-C-AAATAGTTT-A-TAATAT-AA-AAGAACAAAT------AT-AGTGACACAT
gi|56681 : TAACGCAATACA----AG-CTGGA------A-CTGAC-GG-C-AATAAATTT-GTTAAAAT-AA-AA-AACAAAT------AG-AGTGACATAT
gi|56682 : AAAGCAATACA-----G-CTGTA------A-CTGACGGG-C-AAA-GATTT-G-TAAAATAAA-AAGAACAAAT------AG-AGT-ACATAT
gi|56683 : AAGCAATACA----AG-CTGTA------A-CTGAC-G--C-AAATAATTT-G-TAAAAT-AA-AAGACGAAAT------AG-AGTGACATAT
gi|56684 : ATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTG-A-TAAAAT-AA-AATAACAAAT------AA-AGT
gi|56685 : ------A-CTGAC-GG-C-AAATAATTT-G-AAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Alignments
lowQualScore : 2222 1 333333 1 1 1 1 1 1 1 1 0 555555 3
lowQualScore : .... . ...... . . . . . . . . . ...... .
lowQualScore : 9999 4 888888 3 3 3 3 7 7 7 9 7 555555 8
consensus : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Reference ( family-625 ) : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56656 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-A-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56657 : TTAAAGCAATACA----AG-CTGTA------A-CTTAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56658 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-AG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56659 : TTAAAACAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56660 : TTTAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56661 : TTAAAGCAATACA----GG-CTGTA------A-CTGAC-GG-T-AAATAACTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGATATAT
gi|56662 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GG-T-ATATAATTT-G-T-AAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56663 : TTAATGTAATACA----AG-CTGTA------T-CTGAC-GG-C-AAATAATTT-G-TAAAAT--G-AATAACGGAT------AG-AGTGGCATAT
gi|56664 : TTAAAGCAATGCA----AG-CTGTA------A-TAAGC-GG-C-AAATAATTT-G-TAAAAT-AA-ACGAACAAAT------AT-AGTGACATAT
gi|56665 : TTAAAGCAATACT----AG-CTGTACATGTAA-CTGAC-GG-C-AAATAATTTGG-TAAAAT-AA-AAGAACAAGT------AGAAGTGAC
gi|56666 : TTAAAGCAATACA----AAACTGTA------G-CTGAC-TA-C-AAATAATTT-G-TAAATA-AA-AAGAAGAAAT------AG-AGTGACATA
gi|56667 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GGCC-AAATATTTT-G-TAAAAT-
gi|56668 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56669 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-Atttcattt
gi|56670 : TTAAAGCAA-AAA----GG-CTGTC------A-CTGAC-GG-CCAAATAATTT-G-TAAATT-AAGAAGAACAAAT------AGAAGTGA
gi|56671 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56672 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56673 : TTAAAGCAATACATGCAAG-CTGTA------A-CTGAC-GG-T-AAATTAATT-G---AAAT-A
gi|56674 : TTAAATCAATACA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56675 : TTAAAGCAATACA----AG-CTGAA------A-CTGAC-GG-C-AAt
gi|56676 : TTAAAGCAATACA----AG-TTGTA------A-CTGAC-GG-C-
gi|56677 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT----AATAACAAAT------AG-AGTGACATAT
gi|56678 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-A-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56679 : TATAGCAATACA----AG-CTGTA------AGCTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAATAGTCTAAG-AGTGACATAT
gi|56680 : TAGAGCAACACA----AG-CTGTA------A-CTGAC-GG-C-AAATAGTTT-A-TAATAT-AA-AAGAACAAAT------AT-AGTGACACAT
gi|56681 : TAACGCAATACA----AG-CTGGA------A-CTGAC-GG-C-AATAAATTT-GTTAAAAT-AA-AA-AACAAAT------AG-AGTGACATAT
gi|56682 : AAAGCAATACA-----G-CTGTA------A-CTGACGGG-C-AAA-GATTT-G-TAAAATAAA-AAGAACAAAT------AG-AGT-ACATAT
gi|56683 : AAGCAATACA----AG-CTGTA------A-CTGAC-G--C-AAATAATTT-G-TAAAAT-AA-AAGACGAAAT------AG-AGTGACATAT
gi|56684 : ATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTG-A-TAAAAT-AA-AATAACAAAT------AA-AGT
gi|56685 : ------A-CTGAC-GG-C-AAATAATTT-G-AAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
blockSeqs : TGCA A CATGTA G G C C G T A G AGTCTA A
blockSeqs : . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . .
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blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
finalCons : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Alignments
lowQualScore : 2222 1 333333 1 1 1 1 1 1 1 1 0 555555 3
lowQualScore : .... . ...... . . . . . . . . . ...... .
lowQualScore : 9999 4 888888 3 3 3 3 7 7 7 9 7 555555 8
consensus : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
Reference ( family-625 ) : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56656 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-A-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56657 : TTAAAGCAATACA----AG-CTGTA------A-CTTAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGACATAT
gi|56658 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-AG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56659 : TTAAAACAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56660 : TTTAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56661 : TTAAAGCAATACA----GG-CTGTA------A-CTGAC-GG-T-AAATAACTT-G-TAAAAT-AA-AATAACAAAT------AG-AGTGATATAT
gi|56662 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GG-T-ATATAATTT-G-T-AAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56663 : TTAATGTAATACA----AG-CTGTA------T-CTGAC-GG-C-AAATAATTT-G-TAAAAT--G-AATAACGGAT------AG-AGTGGCATAT
gi|56664 : TTAAAGCAATGCA----AG-CTGTA------A-TAAGC-GG-C-AAATAATTT-G-TAAAAT-AA-ACGAACAAAT------AT-AGTGACATAT
gi|56665 : TTAAAGCAATACT----AG-CTGTACATGTAA-CTGAC-GG-C-AAATAATTTGG-TAAAAT-AA-AAGAACAAGT------AGAAGTGAC
gi|56666 : TTAAAGCAATACA----AAACTGTA------G-CTGAC-TA-C-AAATAATTT-G-TAAATA-AA-AAGAAGAAAT------AG-AGTGACATA
gi|56667 : TTAAAGCAATACA----AG-CTGTA------A-CTGAT-GGCC-AAATATTTT-G-TAAAAT-
gi|56668 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56669 : TTAAAGCAATGCA----AG-CTGTA------A-CTGAC-GG-C-Atttcattt
gi|56670 : TTAAAGCAA-AAA----GG-CTGTC------A-CTGAC-GG-CCAAATAATTT-G-TAAATT-AAGAAGAACAAAT------AGAAGTGA
gi|56671 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56672 : TTAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-A
gi|56673 : TTAAAGCAATACATGCAAG-CTGTA------A-CTGAC-GG-T-AAATTAATT-G---AAAT-A
gi|56674 : TTAAATCAATACA----AG-CTGTA------A-CTGAC-GG-C-ATAT
gi|56675 : TTAAAGCAATACA----AG-CTGAA------A-CTGAC-GG-C-AAt
gi|56676 : TTAAAGCAATACA----AG-TTGTA------A-CTGAC-GG-C-
gi|56677 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTT-G-TAAAAT----AATAACAAAT------AG-AGTGACATAT
gi|56678 : TAAAGCAATACA----AG-CTGTA------A-CTGAC-GG-A-AAATAATTT-G-TAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT
gi|56679 : TATAGCAATACA----AG-CTGTA------AGCTGAC-GG-C-AAATAATTT-G-TAAAAT-AA-AATAACAAATAGTCTAAG-AGTGACATAT
gi|56680 : TAGAGCAACACA----AG-CTGTA------A-CTGAC-GG-C-AAATAGTTT-A-TAATAT-AA-AAGAACAAAT------AT-AGTGACACAT
gi|56681 : TAACGCAATACA----AG-CTGGA------A-CTGAC-GG-C-AATAAATTT-GTTAAAAT-AA-AA-AACAAAT------AG-AGTGACATAT
gi|56682 : AAAGCAATACA-----G-CTGTA------A-CTGACGGG-C-AAA-GATTT-G-TAAAATAAA-AAGAACAAAT------AG-AGT-ACATAT
gi|56683 : AAGCAATACA----AG-CTGTA------A-CTGAC-G--C-AAATAATTT-G-TAAAAT-AA-AAGACGAAAT------AG-AGTGACATAT
gi|56684 : ATACA----AG-CTGTA------A-CTGAC-GG-C-AAATAATTG-A-TAAAAT-AA-AATAACAAAT------AA-AGT
gi|56685 : ------A-CTGAC-GG-C-AAATAATTT-G-AAAAAT-AA-AAGAACAAAT------AG-AGTGACATAT