lowQualScore : 2 333 111
lowQualScore : 9 1 22 1 66666 333 1 1 2 2222 555 777 5 5 111 1
lowQualScore : . . .. . ..... ... . . . .... ... ... . . ... .
lowQualScore : 5 4 00 4 55555 888 4 4 8 9999 444 888 7 7 999 9
consensus : CTTTAAGTCAAAA-TCTG-AATA--TTGCA-AT----GAAA---T-GATT-GTGAAGTC-A----ATCA---TTC---AAAATAAAATTGTTA-TTCA--TTA-TTGTTT
Reference ( gi|121222 ) : CCTTAAGTCAAAAATCTG-AATA--TTGCA-AT----GAAA---T-GATT-GTGAAGTC-A----ATCA---TTCAA-AAAATAAAATTGTTA-TCCG--TTA-TTGTTT
gi|121223 : CTTTAAGTCAAAA-TCTG-AATA--TTGCA-AT----GAAA---T-GATT-GTGAAGTC-A----GTCT---TTCCA-AAAATATGACTGTTA-TTCT--TTATTTGTTT
gi|121226 : CCTTAAGTCAAAA-CCTG-AATA--TTGCA-AT----AAAA---T-GATT-GTAAAGTA-A----ATCA---CTCCA-AAA--AAAATTGGTA-TTCA--TTA-TTGTTT
gi|121227 : CCTTAAGTCAAAA-TTTG-ATTA--TTGCA-AG----TAAG---T-GATT-GTGAAGTC-A----TTCA---TTCCATAAAAAAAAATTGTTA-TTCA--TTA-TTGTTT
gi|121225 : CTTTAAGTCAAAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GATT-GTGAAGTC-A----GTCT---TTC---AAAATATGACTGTTA-TTCT--TTA-TTGTTT
gi|121224 : CTTTAAGTCAAAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GATT-GTGAAGTC-A----GTCT---TTC---AAAATATGACTGTTA-TTCT--TTA-TTGTTT
gi|121232 : TTAAGTCAAAAATTTG-AATA--TTGCA-AT----AAAA---T-GATT-CTGAAGTCAA----ATCA---TTC---AAAATAAA--TGTTA-TTC
gi|121228 : TTAAGTCAAAA-TTTA-AACA--TTGTA-AT----GAAA---T-GATT-GAGAAGTC-A----ATCA---TTC-C-AAAATACAATTTTTA-TTCG--TTA-
gi|121237 : tTTAAGTCAAAA-TCTG-AACA--TTGCA-AT----GAAA---T-GATT-GTGACGTC-A----ATAA---TTC-C-AAAATAAAAGTGTTA-
gi|121234 : TTAAGTCAAAC-TCTG-ATTA--TTGCA-AT----TAAAAATT-GATT-GTGAAGTC-A----ATCA---TTC-C-AAAATAAAATTGTTATTTCATCTCA-TTGTTTatcaattttctagtgtct
gi|121233 : TTAAGTCAAAT-TCTA-AATA--GTGCA-AT----GGAA---T-GATT-GTGAAGTT-A----ATCAT--TTC---AAAATATGACTGTTA-TTGA--TTA-TTGTTT
gi|121235 : TTAAGTCAAAA-TTTG-AATAACTTGCA-AT----AAAA---T-GATT-CTGAAGTC-A----ATCA---TTCCA-AAATAAAAATTG-TA-TTTA--GTA-CTGTT
gi|121229 : TTAAGTCAAAA-CCTT-AACA--TTGCA-AT----AAAA---T-GATC-GTGAAGTT-A----ATCA---TTC-C-GAAACGAAATTTTTA-TACA--GTA-TTGTTT
gi|121238 : tTTGAGTCAGAA-TCTG-AATA--TTGTG-AT----TAAA---T-GATT-GAAAAGTC-A----ATCA---TTC-C-AAAATGAAACTGTTA-TTC
gi|121236 : TTAAGTCAAAA-TCTA-AAAA--TTGGA-AT----AAAA---T-GATT-GTGCAGTC-A----ATAAT--TTC---AAAATAAAATTGTTA-T
gi|121230 : TTAAGTCAGAA-TTTG-AAGA--TTAGA-AT----AAAA---T-GATT-GTGAATTC-A----ATCA---TTC-C-AATATGAAATTGTCA-TTCA--ATA-CTGCTTt
gi|121231 : tTTAAGTCCCAAATCTG-AATA--TTGCA-GA----GAAA---TCGATC-GTGAAGTCAA----ATCGTTTTTTGA-AAG--AAAATTGTTATTCCA--TGA-TTGTCT
gi|121240 : tTTAAGTCACAA-TCTGGAAAA--TTGCA-AT----AAAAA--T-GATT-GTGACGTC-A----ATCA---TTC-C-AGAATAGAATTGCTA-
gi|121242 : TTAAGTTAAAA-TCTG-AATA--TTGCA-AT----GAAA---T-TATT-GTGACGTA-A----Aattcatttat
gi|121243 : TTAGGTCAAAA-TCTG-AATA--TTGCA-AT----AAAA--------T-GTGACGTT-G----ATAA---TGC---AAACTGAAATTGTTA-TT----TTA-TT
gi|121244 : TAAGTCAAAA--TTG-AAAA--TTGCA-AT----AAAC---T-GATT-GTGAAGTC-A----ATTA---TTC----AATTAAAATTGTTA-TTTT--TTA-TTGTTT
gi|121245 : TAAGTCAGAA-TCTA-AATA--TTGC--AT----GAAA---T-GA-T-G-GAAGTC-T----ATCA---TCCCA-AAATC--CGTTGTTAGTTCA--TTA-TT
gi|121246 : AAGTCAAAA-TCTG-AATA--TTACG-ACACGAGAAA---T-GATT-GTGAAGTC-C----ATCA---TCCAA-AATAAAAAAAAATTA-TTCA--TCA-TTGCTT
gi|121247 : AAGTCAAAA-TCTT-ATTA--TTGCATAT----AAAA---T-TATTTGTGAAGTC-ATGCAAACA---TTCCA-GAAATAAAG-TG-TA-TTCAT-TTA-TTGTTT
gi|121248 : GTCAGAA-TATG-AATA--TT--A-AC-------A---T-GATT-GTGAAGTC-A----AACA---TTC---CAAATAAAATTGTTATTTCA--TTA-TTGTTT
gi|121249 : AAGAT-TA-AACA--TTGCA-AT----GAAA---C-GGTT-GAGAAGTC-A----ATCG---TTCCA-AAATAAAAATTGTTA-TTCA--TTA-TTGTTT
gi|121239 : ttAAAATCTG-AATA--TTGCA-A------AAT---T-GATT-GAGAAGTC-A----ATCA---TTC-C-AAAATAAAGTTGCTA-TTC
gi|121250 : ttatgttAAGCTT-AATA--TTGCA-AT----AAAA---T-GATT-GTGAAGTC-A----ATCA---TTC-------T--AATTGTTA-TTCA--GTA-TTGTTT
gi|121241 : ATCTG-AATA--TTGCA-AT----------------T-GTGAAGTC-A----ATCA---TT-AC-AAAATGAAATTGTTA-TTC
gi|121251 : ttaagttattAAA---T-GATT-GTGAAGTC-A----ATCA---TTC-C-AAAATATAATTGTTA-TTCA--TTG-TTGT
Alignments
lowQualScore : 1
lowQualScore : 1 2 1 11 1 55555 333 1 1 2222 2 555 1 5 888 1 44 1 4 1 44 1
lowQualScore : . . . .. . ..... ... . . .... . ... . . ... . .. . . . .. .
lowQualScore : 4 8 4 99 4 00000 777 3 3 8888 7 222 4 2 111 4 77 4 1 4 00 8
consensus : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
Reference ( family-615 ) : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121222 : CCTTAAGTCA-AAAATCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-CAA-AAA-AT--AAAATTGTT-A-TC-CG--TTA-TTGTTT
gi|121223 : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-CCA-AAA-AT--ATGACTGTT-A-TT-CT--TTATTTGTTT
gi|121224 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121225 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121226 : CCTTAAGTCA-AAA-CCTG-AATA--TTGCA-AT----AAAA---T-GA-TTGTAAAGT----A-AATCA---C-T-C---CAA-AA--AAAATTGGT-A-TT-CA--TTA-TTGTTT
gi|121227 : CCTTAAGTCA-AAA-TTTG-ATTA--TTGCA-AG----TAAG---T-GA-TTGTGAAGT----C-ATTCA---T-T-CCATAAA-AA--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121228 : TTTAAGTCA-AAA-TTTA-AACA--TTGTA-AT----GAAA---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--ACAATTTTT-A-TT-CG--TTA-
gi|121229 : TTTAAGTCA-AAA-CCTT-AACA--TTGCA-AT----AAAA---T-GA-TCGTGAAGT----T-AATCA---T-TCC---GAA-AC--GAAATTTTT-A-TA-CA--GTA-TTGTTT
gi|121230 : TTTAAGTCA-GAA-TTTG-AAGA--TTAGA-AT----AAAA---T-GA-TTGTGAATT----C-AATCA---T-T-C---CAATAT--GAAATTGTC-A-TT-CA--ATA-CTGCTT
gi|121231 : TTTAAGTCCCAAA-TCTG-AATA--TTGCA-GA----GAAA---TCGA-TCGTGAAGT----CAAATCGTTTT-T-T---GAA-AG--AAAATTGTT-A-TTCCA--TGA-TTGTCT
gi|121232 : TTAAGTCA-AAAATTTG-AATA--TTGCA-AT----AAAA---T-GA-TTCTGAAGT----CAAATCA---T-T-C---AAA-AT--AAA--TGTT-A-TT-C
gi|121233 : TTAAGTCA-AAT-TCTA-AATA--GTGCA-AT----GGAA---T-GA-TTGTGAAGT----T-AATCAT--T-T-C---AAA-AT--ATGACTGTT-A-TT-GA--TTA-TTGTTT
gi|121234 : TTAAGTCA-AAC-TCTG-ATTA--TTGCA-AT----TAAAAATT-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--AAAATTGTT-ATTT-CATCTCA-TTGTTT
gi|121235 : TTAAGTCA-AAA-TTTG-AATAACTTGCA-AT----AAAA---T-GA-TTCTGAAGT----C-AATCA---T-TCC---AAA-ATA-AAAATTG-T-A-TT-TA--GTA-CTGTT
gi|121236 : TTAAGTCA-AAA-TCTA-AAAA--TTGGA-AT----AAAA---T-GA-TTGTGCAGT----C-AATAAT--T-T-C---AAA-AT--AAAATTGTT-A-TT-
gi|121237 : TTAAGTCA-AAA-TCTG-AACA--TTGCA-AT----GAAA---T-GA-TTGTGACGT----C-AATAA---T-TCC---AAA-AT--AAAAGTGTT-A-AT-CA--
gi|121238 : TTGAGTCA-GAA-TCTG-AATA--TTGTG-AT----TAAA---T-GA-TTGAAAAGT----C-AATCA---T-TCC---AAA-AT--GAAACTGTT-A-TT-Cattttctagtgtct
gi|121239 : TTATGTTA-AAA-TCTG-AATA--TTGCA-A------AAT---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--AAAGTTGCT-A-TT-C
gi|121240 : TTAAGTCA-CAA-TCTGGAAAA--TTGCA-AT----AAAAA--T-GA-TTGTGACGT----C-AATCA---T-TCC---AGA-AT--AGAATTGCTAA-TT-CA--TT
gi|121241 : TTAAGTTA-TTA-TCTG-AATA--TTGCA-----------------A-TTGTGAAGT----C-AATCA---T-TAC---AAA-AT--GAAATTGTT-A-TT-Ctat
gi|121242 : TTAAGTTA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-TA-TTGTGACGT----A-AA
gi|121243 : TTAGGTCA-AAA-TCTG-AATA--TTGCA-AT----AAAA---------TGTGACGT----T-GATAA---T-G-C---AAA-CT--GAAATTGTT-A-TT-----TTA-TT
gi|121244 : TAAGTCA-AAA-T-TG-AAAA--TTGCA-AT----AAAC---T-GA-TTGTGAAGT----C-AATTA---T-T-C----AA-TT--AAAATTGTT-A-TT-TT--TTA-TTGTTT
gi|121245 : TAAGTCA-GAA-TCTA-AATA--TTGC--AT----GAAA---T-GA--TG-GAAGT----C-TATCA---TCC-C---AAA-AT---CCGTTGTT-AGTT-CA--TTA-TT
gi|121246 : AAGTCA-AAA-TCTG-AATA--TTACG-ACACGAGAAA---T-GA-TTGTGAAGT----C-CATCA---T-C-C---AAA-ATAAAAAAAAATT-A-TT-CA--TCA-TTGCTT
gi|121247 : AAGTCA-AAA-TCTT-ATTA--TTGCATAT----AAAA---T-TATTTGTGAAGTCATGC-AAACA---T-T-CCA-GAA-AT--AAAG-TG-T-A-TT-CAT-TTA-TTGTTT
gi|121248 : GTCA-GAA-TATG-AATA--TT--A-AC-------A---T-GA-TTGTGAAGT----C-AAACA---T-T-C---CAA-AT--AAAATTGTT-ATTT-CA--TTA-TTGTTT
gi|121249 : TTA-AGA-T-TA-AACA--TTGCA-AT----GAAA---C-GG-TTGAGAAGT----C-AATCG---T-TCC---AAA-ATA-AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121250 : AA-GCTT-AATA--TTGCA-AT----AAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C--------T----AATTGTT-A-TT-CA--GTA-TTGTTT
gi|121251 : AAA---T-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--ATAATTGTT-A-TT-CA--TTG-TTGT
Alignments
lowQualScore : 1
lowQualScore : 1 2 1 11 1 55555 333 1 1 2222 2 555 1 5 888 1 44 1 4 1 44 1
lowQualScore : . . . .. . ..... ... . . .... . ... . . ... . .. . . . .. .
lowQualScore : 4 8 4 99 4 00000 777 3 3 8888 7 222 4 2 111 4 77 4 1 4 00 8
consensus : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
Reference ( family-615 ) : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121222 : CCTTAAGTCA-AAAATCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-CAA-AAA-AT--AAAATTGTT-A-TC-CG--TTA-TTGTTT
gi|121223 : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-CCA-AAA-AT--ATGACTGTT-A-TT-CT--TTATTTGTTT
gi|121224 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121225 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121226 : CCTTAAGTCA-AAA-CCTG-AATA--TTGCA-AT----AAAA---T-GA-TTGTAAAGT----A-AATCA---C-T-C---CAA-AA--AAAATTGGT-A-TT-CA--TTA-TTGTTT
gi|121227 : CCTTAAGTCA-AAA-TTTG-ATTA--TTGCA-AG----TAAG---T-GA-TTGTGAAGT----C-ATTCA---T-T-CCATAAA-AA--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121228 : TTTAAGTCA-AAA-TTTA-AACA--TTGTA-AT----GAAA---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--ACAATTTTT-A-TT-CG--TTA-
gi|121229 : TTTAAGTCA-AAA-CCTT-AACA--TTGCA-AT----AAAA---T-GA-TCGTGAAGT----T-AATCA---T-TCC---GAA-AC--GAAATTTTT-A-TA-CA--GTA-TTGTTT
gi|121230 : TTTAAGTCA-GAA-TTTG-AAGA--TTAGA-AT----AAAA---T-GA-TTGTGAATT----C-AATCA---T-T-C---CAATAT--GAAATTGTC-A-TT-CA--ATA-CTGCTT
gi|121231 : TTTAAGTCCCAAA-TCTG-AATA--TTGCA-GA----GAAA---TCGA-TCGTGAAGT----CAAATCGTTTT-T-T---GAA-AG--AAAATTGTT-A-TTCCA--TGA-TTGTCT
gi|121232 : TTAAGTCA-AAAATTTG-AATA--TTGCA-AT----AAAA---T-GA-TTCTGAAGT----CAAATCA---T-T-C---AAA-AT--AAA--TGTT-A-TT-C
gi|121233 : TTAAGTCA-AAT-TCTA-AATA--GTGCA-AT----GGAA---T-GA-TTGTGAAGT----T-AATCAT--T-T-C---AAA-AT--ATGACTGTT-A-TT-GA--TTA-TTGTTT
gi|121234 : TTAAGTCA-AAC-TCTG-ATTA--TTGCA-AT----TAAAAATT-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--AAAATTGTT-ATTT-CATCTCA-TTGTTT
gi|121235 : TTAAGTCA-AAA-TTTG-AATAACTTGCA-AT----AAAA---T-GA-TTCTGAAGT----C-AATCA---T-TCC---AAA-ATA-AAAATTG-T-A-TT-TA--GTA-CTGTT
gi|121236 : TTAAGTCA-AAA-TCTA-AAAA--TTGGA-AT----AAAA---T-GA-TTGTGCAGT----C-AATAAT--T-T-C---AAA-AT--AAAATTGTT-A-TT-
gi|121237 : TTAAGTCA-AAA-TCTG-AACA--TTGCA-AT----GAAA---T-GA-TTGTGACGT----C-AATAA---T-TCC---AAA-AT--AAAAGTGTT-A-AT-CA--
gi|121238 : TTGAGTCA-GAA-TCTG-AATA--TTGTG-AT----TAAA---T-GA-TTGAAAAGT----C-AATCA---T-TCC---AAA-AT--GAAACTGTT-A-TT-Cattttctagtgtct
gi|121239 : TTATGTTA-AAA-TCTG-AATA--TTGCA-A------AAT---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--AAAGTTGCT-A-TT-C
gi|121240 : TTAAGTCA-CAA-TCTGGAAAA--TTGCA-AT----AAAAA--T-GA-TTGTGACGT----C-AATCA---T-TCC---AGA-AT--AGAATTGCTAA-TT-CA--TT
gi|121241 : TTAAGTTA-TTA-TCTG-AATA--TTGCA-----------------A-TTGTGAAGT----C-AATCA---T-TAC---AAA-AT--GAAATTGTT-A-TT-Ctat
gi|121242 : TTAAGTTA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-TA-TTGTGACGT----A-AA
gi|121243 : TTAGGTCA-AAA-TCTG-AATA--TTGCA-AT----AAAA---------TGTGACGT----T-GATAA---T-G-C---AAA-CT--GAAATTGTT-A-TT-----TTA-TT
gi|121244 : TAAGTCA-AAA-T-TG-AAAA--TTGCA-AT----AAAC---T-GA-TTGTGAAGT----C-AATTA---T-T-C----AA-TT--AAAATTGTT-A-TT-TT--TTA-TTGTTT
gi|121245 : TAAGTCA-GAA-TCTA-AATA--TTGC--AT----GAAA---T-GA--TG-GAAGT----C-TATCA---TCC-C---AAA-AT---CCGTTGTT-AGTT-CA--TTA-TT
gi|121246 : AAGTCA-AAA-TCTG-AATA--TTACG-ACACGAGAAA---T-GA-TTGTGAAGT----C-CATCA---T-C-C---AAA-ATAAAAAAAAATT-A-TT-CA--TCA-TTGCTT
gi|121247 : AAGTCA-AAA-TCTT-ATTA--TTGCATAT----AAAA---T-TATTTGTGAAGTCATGC-AAACA---T-T-CCA-GAA-AT--AAAG-TG-T-A-TT-CAT-TTA-TTGTTT
gi|121248 : GTCA-GAA-TATG-AATA--TT--A-AC-------A---T-GA-TTGTGAAGT----C-AAACA---T-T-C---CAA-AT--AAAATTGTT-ATTT-CA--TTA-TTGTTT
gi|121249 : TTA-AGA-T-TA-AACA--TTGCA-AT----GAAA---C-GG-TTGAGAAGT----C-AATCG---T-TCC---AAA-ATA-AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121250 : AA-GCTT-AATA--TTGCA-AT----AAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C--------T----AATTGTT-A-TT-CA--GTA-TTGTTT
gi|121251 : AAA---T-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--ATAATTGTT-A-TT-CA--TTG-TTGT
blockSeqs : C A G AC T ACGAG AAT C T CATG A TTT C C CAT T AA A T C TC T
blockSeqs : . . . . . G A . . . A T . C CA . A . G . T .
blockSeqs : . . . . . G . . . . . T . C CA . A . T . . .
blockSeqs : . . . . . G . . . . . . . C . . . . . . . .
blockSeqs : . . . . . A . . . . . . . C . . . . . . . .
blockSeqs : . . . . . T . . . . . . . C . . . . . . . .
blockSeqs : . . . . . G . . . . . . . C . . . . . . . .
blockSeqs : . . . . . A . . . . . . . C . . . . . . . .
blockSeqs : . . . . . A . . . . . . . A . . . . . . . .
blockSeqs : . . . . . G . . . . . . . C . . . . . . . .
blockSeqs : . . . . . A . . . . . . . C . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ***
originalCons : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
finalCons : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
Alignments
lowQualScore : 1
lowQualScore : 1 2 1 11 1 55555 333 1 1 2222 2 555 1 5 888 1 44 1 4 1 44 1
lowQualScore : . . . .. . ..... ... . . .... . ... . . ... . .. . . . .. .
lowQualScore : 4 8 4 99 4 00000 777 3 3 8888 7 222 4 2 111 4 77 4 1 4 00 8
consensus : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
Reference ( family-615 ) : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C---AAA-AT--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121222 : CCTTAAGTCA-AAAATCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-CAA-AAA-AT--AAAATTGTT-A-TC-CG--TTA-TTGTTT
gi|121223 : CTTTAAGTCA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-CCA-AAA-AT--ATGACTGTT-A-TT-CT--TTATTTGTTT
gi|121224 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121225 : CTTTAAGTCA-AAA-TCTG-AAAT--TTGCA-AT----GAAA---T-GA-TTGTGAAGT----C-AGTCT---T-T-C---AAA-AT--ATGACTGTT-A-TT-CT--TTA-TTGTTT
gi|121226 : CCTTAAGTCA-AAA-CCTG-AATA--TTGCA-AT----AAAA---T-GA-TTGTAAAGT----A-AATCA---C-T-C---CAA-AA--AAAATTGGT-A-TT-CA--TTA-TTGTTT
gi|121227 : CCTTAAGTCA-AAA-TTTG-ATTA--TTGCA-AG----TAAG---T-GA-TTGTGAAGT----C-ATTCA---T-T-CCATAAA-AA--AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121228 : TTTAAGTCA-AAA-TTTA-AACA--TTGTA-AT----GAAA---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--ACAATTTTT-A-TT-CG--TTA-
gi|121229 : TTTAAGTCA-AAA-CCTT-AACA--TTGCA-AT----AAAA---T-GA-TCGTGAAGT----T-AATCA---T-TCC---GAA-AC--GAAATTTTT-A-TA-CA--GTA-TTGTTT
gi|121230 : TTTAAGTCA-GAA-TTTG-AAGA--TTAGA-AT----AAAA---T-GA-TTGTGAATT----C-AATCA---T-T-C---CAATAT--GAAATTGTC-A-TT-CA--ATA-CTGCTT
gi|121231 : TTTAAGTCCCAAA-TCTG-AATA--TTGCA-GA----GAAA---TCGA-TCGTGAAGT----CAAATCGTTTT-T-T---GAA-AG--AAAATTGTT-A-TTCCA--TGA-TTGTCT
gi|121232 : TTAAGTCA-AAAATTTG-AATA--TTGCA-AT----AAAA---T-GA-TTCTGAAGT----CAAATCA---T-T-C---AAA-AT--AAA--TGTT-A-TT-C
gi|121233 : TTAAGTCA-AAT-TCTA-AATA--GTGCA-AT----GGAA---T-GA-TTGTGAAGT----T-AATCAT--T-T-C---AAA-AT--ATGACTGTT-A-TT-GA--TTA-TTGTTT
gi|121234 : TTAAGTCA-AAC-TCTG-ATTA--TTGCA-AT----TAAAAATT-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--AAAATTGTT-ATTT-CATCTCA-TTGTTT
gi|121235 : TTAAGTCA-AAA-TTTG-AATAACTTGCA-AT----AAAA---T-GA-TTCTGAAGT----C-AATCA---T-TCC---AAA-ATA-AAAATTG-T-A-TT-TA--GTA-CTGTT
gi|121236 : TTAAGTCA-AAA-TCTA-AAAA--TTGGA-AT----AAAA---T-GA-TTGTGCAGT----C-AATAAT--T-T-C---AAA-AT--AAAATTGTT-A-TT-
gi|121237 : TTAAGTCA-AAA-TCTG-AACA--TTGCA-AT----GAAA---T-GA-TTGTGACGT----C-AATAA---T-TCC---AAA-AT--AAAAGTGTT-A-AT-CA--
gi|121238 : TTGAGTCA-GAA-TCTG-AATA--TTGTG-AT----TAAA---T-GA-TTGAAAAGT----C-AATCA---T-TCC---AAA-AT--GAAACTGTT-A-TT-Cattttctagtgtct
gi|121239 : TTATGTTA-AAA-TCTG-AATA--TTGCA-A------AAT---T-GA-TTGAGAAGT----C-AATCA---T-TCC---AAA-AT--AAAGTTGCT-A-TT-C
gi|121240 : TTAAGTCA-CAA-TCTGGAAAA--TTGCA-AT----AAAAA--T-GA-TTGTGACGT----C-AATCA---T-TCC---AGA-AT--AGAATTGCTAA-TT-CA--TT
gi|121241 : TTAAGTTA-TTA-TCTG-AATA--TTGCA-----------------A-TTGTGAAGT----C-AATCA---T-TAC---AAA-AT--GAAATTGTT-A-TT-Ctat
gi|121242 : TTAAGTTA-AAA-TCTG-AATA--TTGCA-AT----GAAA---T-TA-TTGTGACGT----A-AA
gi|121243 : TTAGGTCA-AAA-TCTG-AATA--TTGCA-AT----AAAA---------TGTGACGT----T-GATAA---T-G-C---AAA-CT--GAAATTGTT-A-TT-----TTA-TT
gi|121244 : TAAGTCA-AAA-T-TG-AAAA--TTGCA-AT----AAAC---T-GA-TTGTGAAGT----C-AATTA---T-T-C----AA-TT--AAAATTGTT-A-TT-TT--TTA-TTGTTT
gi|121245 : TAAGTCA-GAA-TCTA-AATA--TTGC--AT----GAAA---T-GA--TG-GAAGT----C-TATCA---TCC-C---AAA-AT---CCGTTGTT-AGTT-CA--TTA-TT
gi|121246 : AAGTCA-AAA-TCTG-AATA--TTACG-ACACGAGAAA---T-GA-TTGTGAAGT----C-CATCA---T-C-C---AAA-ATAAAAAAAAATT-A-TT-CA--TCA-TTGCTT
gi|121247 : AAGTCA-AAA-TCTT-ATTA--TTGCATAT----AAAA---T-TATTTGTGAAGTCATGC-AAACA---T-T-CCA-GAA-AT--AAAG-TG-T-A-TT-CAT-TTA-TTGTTT
gi|121248 : GTCA-GAA-TATG-AATA--TT--A-AC-------A---T-GA-TTGTGAAGT----C-AAACA---T-T-C---CAA-AT--AAAATTGTT-ATTT-CA--TTA-TTGTTT
gi|121249 : TTA-AGA-T-TA-AACA--TTGCA-AT----GAAA---C-GG-TTGAGAAGT----C-AATCG---T-TCC---AAA-ATA-AAAATTGTT-A-TT-CA--TTA-TTGTTT
gi|121250 : AA-GCTT-AATA--TTGCA-AT----AAAA---T-GA-TTGTGAAGT----C-AATCA---T-T-C--------T----AATTGTT-A-TT-CA--GTA-TTGTTT
gi|121251 : AAA---T-GA-TTGTGAAGT----C-AATCA---T-TCC---AAA-AT--ATAATTGTT-A-TT-CA--TTG-TTGT