lowQualScore                  :     11  2  4     4  2222  1 2 11 222 1  1  2  1 1 1      1  2 1 0 2      8888     33   1    
lowQualScore                  :     ..  .  .     .  ....  . . .. ... .  .  .  . . .      .  . . . .      ....     ..   .    
lowQualScore                  :     99  8  1     0  7777  3 6 88 333 3  3  6  3 3 3      3  6 3 3 6      2222     88   4    
consensus                     : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTGATA----TTTTT--TTC-ATAT
Reference ( gi|57752 )        : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TGT-GTGATA----TTTTT--TTC-ATAT
gi|57751                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTGATA----TTTTT--TTC-ATAT
gi|57750                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTGATA----TTTTT--TTC-ATAT
gi|57754                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TGT-GTGATA----TTTTG--TTC-ATAT
gi|57758                      : TTAT--CA-CA-TATTTTAC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TGT-GTGATA----TTTTT--TTC-ATAT
gi|57753                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TA--GTGATA----TTTTT--TTC-ATAT
gi|57763                      : TCAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-CGT-GTGAT-----TTTTT--TTC-ATAT
gi|57760                      : TTAT--CA-CA-TATTT-GC----CC-CCT--T---T-AT-CC-AG-T-T-GATATC-AC-C-TAT-GTGATA----TTTTT--TTC-ATAT
gi|57759                      : TTAT--CA-CA-TATTT-GC----CC-C-T--T---T-AT-CC-AG-T-T-GATATA-AC-T-TAT-GTGATA----TCTTT--TTC-ATAT
gi|57761                      : TTAT--CA-CA-TATTT-AC----CC---T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTGATAT---TTTTT--TTC-ATAT
gi|57762                      : TTAT--CA-CA-TATTT-AC----CC-C-C--T---T-AT-CC-AG-T-T-GGTATC-AC-T-TAT-GTGATAT---TTTTT--TTT-ATAT
gi|57768                      : TTAT--CA-CA-TATTTTAC----CC-CCT--T---T-AT-CC-AG-T-T-GATATC-AC-T-TGTGGTGATA----TTCTT--TTT-ATAT
gi|57764                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-AC-AG-T-T-GATATC-AC-T-CAT-GTGATA-----ATTT--TTC-ATAT
gi|57771                      : TTGT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CG-AG-T-T-CATATC-AC-T-CGT-GTAATAT---TTTTT--TTC-ATAT
gi|57765                      : TTTT--CA-CAATATTTTAC----CC-A-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTGATA----TTTTT--TTC-ATA
gi|57766                      : TTAT--CA-CA-TATTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATAAC-AC-T-CAT-GTGATA----AATTG--TTC-ATAT
gi|57767                      : TTAT--CA-CA-TATTT-AC----CT-C-TTAT---C-AT-CC-AG-T-T-GATATCAAC-T-TAT-GTGATA----TTTTT--TTC--TAT
gi|57773                      : TTATTCCA-CA-TATTT-AC----CC-C-C--TAATT-AT-CC-AG-T-T-GATATC-AC-T-TGT-GTGATAGATTTTTTT--TTC-AAAT
gi|57770                      : TTAT--CA-CA-TGTTT-AC----CC-C-T--T---T-AT-CC-AG-T-T-GATAAC-AC-T-GAT-ATGATA----AATTT--TTC-ATAT
gi|57755                      : TTAT--CAACAATATTT-AC----CC-C-T--T---T-AT-CCCAG-T-T-GATATC--C-TATGT-GTGATA----TTTTTTGTTC-ATAT
gi|57772                      : TTAT--CA-CA-TATTT-ACTTACCC-C-T--T---T-AT-CC-AG-T-T-GATAAC-AC-T-CAT-ATGATA----AATTT--TTC-ATAT
gi|57756                      : TTAT--CA-CA-TA-TT-AC----CC-C-T--T---TAAT-CC-AGTT-T-GATATC-ACTT-TGT-GTTATA----TTTTG--TTC-AT
gi|57769                      : TTAT--AC-CA-TAATT-AC----CC-C-T--T---T-ATCCC-AG-T-T-GCTATC-AC-T-TATGGTGATA----TTTTT--TTC-AT
gi|57757                      : TTAT--CAACAATATT--------CC-C-T--T---T-AT-CCCAG-T-T-GATATG-AC-T-TGT-GTGATAT---TTTTT--TTC-ATAT
gi|57775                      : TTAT--CA-CA-TATTT-AC----CC------T---T-A--CC-A--T-T-GATATC-GCCT-TGT--TGATA----TTTTT--TTC-ATAT
gi|57774                      : TTAT---A-CA-TATTT-AC----CC-T-T--G---T-AT-CC-AG-TAT-ATTATC-AC-T-TAT-GTGATA----TTTTTCGTTCAATAT
gi|57777                      : TTAT--CA-CA--ATT--AC----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AG-T-CAT-G
gi|57776                      : TCAT--CA-TA-TATTT-AC----TC-C-T--C---T-AT-AC--G-T-T-GATATC-AC-T-CAT-ATGATA----ATTTG--TTC-ACAT
gi|57778                      :  TAT--TA-CA-T-TTT-AC----CC-C-T--T---T-AT-CC-AG-T-TGGATATC-AC---TGT-GTGATA-----TTTT--TTC-ATAT
gi|57779                      :  TAT--CA-CA--ATTT-AC----CCTC-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT-GTG-TA-----TTTT--TTC-ATAT
gi|57780                      :                  -AC----CC-C-T--T---T-AT-CC-AA-T-T-GATATC-AC-T-CAT-GTGATA----T
gi|57781                      :                     ----CC-C-T--T---T-AT-CC-AG-T-T-GATATC-AC-T-TAT--TGATA----TTTTT--TTC-ATAT





Alignments
lowQualScore                  :     11  2  4     3  2222  1 2  333 1  1  2  1 1 1       1  1   2  1 11   7777     33   1    
lowQualScore                  :     ..  .  .     .  ....  . .  ... .  .  .  . . .       .  .   .  . ..   ....     ..   .    
lowQualScore                  :     88  7  0     9  7777  2 5  999 2  2  5  2 2 2       2  2   5  3 88   9999     77   3    
consensus                     : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
Reference ( family-590 )      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57750                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57751                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57752                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57753                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TA--GT-G--ATA----TTTTT--TTC-ATAT
gi|57754                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTG--TTC-ATAT
gi|57755                      : TTAT--CAACAATATTT-AC----CC-C-TT---T-AT-CCCAG-T-T-GATATC--CTATGT-GT-G--ATA----TTTTTTGTTC-ATAT
gi|57756                      : TTAT--CA-CA-TA-TT-AC----CC-C-TT---TAAT-CC-AGTT-T-GATATCA-CT-T-T-GT-GTTATA----TTTTG--TTC-AT
gi|57757                      : TTAT--CAACAATATT--------CC-C-TT---T-AT-CCCAG-T-T-GATATGA-CT-TGT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57758                      : TTAT--CA-CA-TATTTTAC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57759                      : TTAT--CA-CA-TATTT-GC----CC-C-TT---T-AT-CC-AG-T-T-GATATAA-CT-TAT-GT-G--ATA----TCTTT--TTC-ATAT
gi|57760                      : TTAT--CA-CA-TATTT-GC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CC-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57761                      : TTAT--CA-CA-TATTT-AC----CC---TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57762                      : TTAT--CA-CA-TATTT-AC----CC-C-CT---T-AT-CC-AG-T-T-GGTATCA-CT-TAT-GT-G--ATAT---TTTTT--TTT-ATAT
gi|57763                      : TCAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-CGT-GT-G--AT-----TTTTT--TTC-ATAT
gi|57764                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-AC-AG-T-T-GATATCA-CT-CAT-GT-G--ATA-----ATTT--TTC-ATAT
gi|57765                      : TTTT--CA-CAATATTTTAC----CC-A-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATA
gi|57766                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-GT-G--ATA----AATTG--TTC-ATAT
gi|57767                      : TTAT--CA-CA-TATTT-AC----CT-C-TTAT-C-AT-CC-AG-T-T-GATATCAACT-TAT-GT-G--ATA----TTTTT--TTC--TAT
gi|57768                      : TTAT--CA-CA-TATTTTAC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CT-TGTGGT-G--ATA----TTCTT--TTT-ATAT
gi|57769                      : TTAT--AC-CA-TAATT-AC----CC-C-TT---T-ATCCC-AG-T-T-GCTATCA-CT-TATGGT-G--ATA----TTTTT--TTC-AT
gi|57770                      : TTAT--CA-CA-TGTTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-GAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57771                      : TTGT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CG-AG-T-T-CATATCA-CT-CGT-GT-A--ATAT---TTTTT--TTC-ATAT
gi|57772                      : TTAT--CA-CA-TATTT-ACTTACCC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57773                      : TTATTCCA-CA-TATTT-AC----CC-C-CTAATT-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATAGATTTTTTT--TTC-AAAT
gi|57774                      : TTAT---A-CA-TATTT-AC----CC-T-TG---T-AT-CC-AG-TAT-ATTATCA-CT-TAT-GT-G--ATA----TTTTTCGTTCAATAT
gi|57775                      : TTAT--CA-CA-TATTT-AC----CC----T---T-A--CC-A--T-T-GATATCG-CC-T-T-GTTG--ATA----TTTTT--TTC-ATAT
gi|57776                      : TCAT--CA-TA-TATTT-AC----TC-C-TC---T-AT-AC--G-T-T-GATATCA-CT-CAT-AT-G--ATA----ATTTG--TTC-ACAT
gi|57777                      : TTAT--CA-CA--ATT--AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-GT-CAT-G
gi|57778                      :  TAT--TA-CA-T-TTT-AC----CC-C-TT---T-AT-CC-AG-T-TGGATATCA-C--TGT-GT-G--ATA-----TTTT--TTC-ATAT
gi|57779                      :  TAT--CA-CA--ATTT-AC----CCTC-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G---TA-----TTTT--TTC-ATAT
gi|57780                      :                  -AC----CC-C-TT---T-AT-CC-AA-T-T-GATATCA-CT-CAT-GT-G--ATA----T
gi|57781                      :                     ----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT--T-G--ATA----TTTTT--TTC-ATAT





Alignments
lowQualScore                  :     11  2  4     3  2222  1 2  333 1  1  2  1 1 1       1  1   2  1 11   7777     33   1    
lowQualScore                  :     ..  .  .     .  ....  . .  ... .  .  .  . . .       .  .   .  . ..   ....     ..   .    
lowQualScore                  :     88  7  0     9  7777  2 5  999 2  2  5  2 2 2       2  2   5  3 88   9999     77   3    
consensus                     : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
Reference ( family-590 )      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57750                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57751                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57752                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57753                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TA--GT-G--ATA----TTTTT--TTC-ATAT
gi|57754                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTG--TTC-ATAT
gi|57755                      : TTAT--CAACAATATTT-AC----CC-C-TT---T-AT-CCCAG-T-T-GATATC--CTATGT-GT-G--ATA----TTTTTTGTTC-ATAT
gi|57756                      : TTAT--CA-CA-TA-TT-AC----CC-C-TT---TAAT-CC-AGTT-T-GATATCA-CT-T-T-GT-GTTATA----TTTTG--TTC-AT
gi|57757                      : TTAT--CAACAATATT--------CC-C-TT---T-AT-CCCAG-T-T-GATATGA-CT-TGT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57758                      : TTAT--CA-CA-TATTTTAC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57759                      : TTAT--CA-CA-TATTT-GC----CC-C-TT---T-AT-CC-AG-T-T-GATATAA-CT-TAT-GT-G--ATA----TCTTT--TTC-ATAT
gi|57760                      : TTAT--CA-CA-TATTT-GC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CC-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57761                      : TTAT--CA-CA-TATTT-AC----CC---TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57762                      : TTAT--CA-CA-TATTT-AC----CC-C-CT---T-AT-CC-AG-T-T-GGTATCA-CT-TAT-GT-G--ATAT---TTTTT--TTT-ATAT
gi|57763                      : TCAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-CGT-GT-G--AT-----TTTTT--TTC-ATAT
gi|57764                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-AC-AG-T-T-GATATCA-CT-CAT-GT-G--ATA-----ATTT--TTC-ATAT
gi|57765                      : TTTT--CA-CAATATTTTAC----CC-A-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATA
gi|57766                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-GT-G--ATA----AATTG--TTC-ATAT
gi|57767                      : TTAT--CA-CA-TATTT-AC----CT-C-TTAT-C-AT-CC-AG-T-T-GATATCAACT-TAT-GT-G--ATA----TTTTT--TTC--TAT
gi|57768                      : TTAT--CA-CA-TATTTTAC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CT-TGTGGT-G--ATA----TTCTT--TTT-ATAT
gi|57769                      : TTAT--AC-CA-TAATT-AC----CC-C-TT---T-ATCCC-AG-T-T-GCTATCA-CT-TATGGT-G--ATA----TTTTT--TTC-AT
gi|57770                      : TTAT--CA-CA-TGTTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-GAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57771                      : TTGT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CG-AG-T-T-CATATCA-CT-CGT-GT-A--ATAT---TTTTT--TTC-ATAT
gi|57772                      : TTAT--CA-CA-TATTT-ACTTACCC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57773                      : TTATTCCA-CA-TATTT-AC----CC-C-CTAATT-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATAGATTTTTTT--TTC-AAAT
gi|57774                      : TTAT---A-CA-TATTT-AC----CC-T-TG---T-AT-CC-AG-TAT-ATTATCA-CT-TAT-GT-G--ATA----TTTTTCGTTCAATAT
gi|57775                      : TTAT--CA-CA-TATTT-AC----CC----T---T-A--CC-A--T-T-GATATCG-CC-T-T-GTTG--ATA----TTTTT--TTC-ATAT
gi|57776                      : TCAT--CA-TA-TATTT-AC----TC-C-TC---T-AT-AC--G-T-T-GATATCA-CT-CAT-AT-G--ATA----ATTTG--TTC-ACAT
gi|57777                      : TTAT--CA-CA--ATT--AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-GT-CAT-G
gi|57778                      :  TAT--TA-CA-T-TTT-AC----CC-C-TT---T-AT-CC-AG-T-TGGATATCA-C--TGT-GT-G--ATA-----TTTT--TTC-ATAT
gi|57779                      :  TAT--CA-CA--ATTT-AC----CCTC-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G---TA-----TTTT--TTC-ATAT
gi|57780                      :                  -AC----CC-C-TT---T-AT-CC-AA-T-T-GATATCA-CT-CAT-GT-G--ATA----T
gi|57781                      :                     ----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT--T-G--ATA----TTTTT--TTC-ATAT


blockSeqs                     :     TC  A  A     T  TTAC  T C  AAT A  C  C  T A G       A  A   G  T TT   GATT     TG   A
blockSeqs                     :     .   A  A     T  .     . C  AT  .  .  C  . . .       .  .   G  . .    T        CG   .
blockSeqs                     :     .   .  A     T  .     . .  .   .  .  .  . . .       .  .   .  . .    T        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    T        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    T        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :     .   .  .     .  .     . .  .   .  .  .  . . .       .  .   .  . .    .        .    .
blockSeqs                     :                  .  .     . .  .   .  .  .  . . .       .  .   .  . .    .              
blockSeqs                     :                     .     . .  .   .  .  .  . . .       .  .   .                        


blockSeqCons                  : 
originalCons                  : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
finalCons                     : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT





Alignments
lowQualScore                  :     11  2  4     3  2222  1 2  333 1  1  2  1 1 1       1  1   2  1 11   7777     33   1    
lowQualScore                  :     ..  .  .     .  ....  . .  ... .  .  .  . . .       .  .   .  . ..   ....     ..   .    
lowQualScore                  :     88  7  0     9  7777  2 5  999 2  2  5  2 2 2       2  2   5  3 88   9999     77   3    
consensus                     : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
Reference ( family-590 )      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57750                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57751                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57752                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57753                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TA--GT-G--ATA----TTTTT--TTC-ATAT
gi|57754                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTG--TTC-ATAT
gi|57755                      : TTAT--CAACAATATTT-AC----CC-C-TT---T-AT-CCCAG-T-T-GATATC--CTATGT-GT-G--ATA----TTTTTTGTTC-ATAT
gi|57756                      : TTAT--CA-CA-TA-TT-AC----CC-C-TT---TAAT-CC-AGTT-T-GATATCA-CT-T-T-GT-GTTATA----TTTTG--TTC-AT
gi|57757                      : TTAT--CAACAATATT--------CC-C-TT---T-AT-CCCAG-T-T-GATATGA-CT-TGT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57758                      : TTAT--CA-CA-TATTTTAC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57759                      : TTAT--CA-CA-TATTT-GC----CC-C-TT---T-AT-CC-AG-T-T-GATATAA-CT-TAT-GT-G--ATA----TCTTT--TTC-ATAT
gi|57760                      : TTAT--CA-CA-TATTT-GC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CC-TAT-GT-G--ATA----TTTTT--TTC-ATAT
gi|57761                      : TTAT--CA-CA-TATTT-AC----CC---TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATAT---TTTTT--TTC-ATAT
gi|57762                      : TTAT--CA-CA-TATTT-AC----CC-C-CT---T-AT-CC-AG-T-T-GGTATCA-CT-TAT-GT-G--ATAT---TTTTT--TTT-ATAT
gi|57763                      : TCAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-CGT-GT-G--AT-----TTTTT--TTC-ATAT
gi|57764                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-AC-AG-T-T-GATATCA-CT-CAT-GT-G--ATA-----ATTT--TTC-ATAT
gi|57765                      : TTTT--CA-CAATATTTTAC----CC-A-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G--ATA----TTTTT--TTC-ATA
gi|57766                      : TTAT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-GT-G--ATA----AATTG--TTC-ATAT
gi|57767                      : TTAT--CA-CA-TATTT-AC----CT-C-TTAT-C-AT-CC-AG-T-T-GATATCAACT-TAT-GT-G--ATA----TTTTT--TTC--TAT
gi|57768                      : TTAT--CA-CA-TATTTTAC----CC-CCTT---T-AT-CC-AG-T-T-GATATCA-CT-TGTGGT-G--ATA----TTCTT--TTT-ATAT
gi|57769                      : TTAT--AC-CA-TAATT-AC----CC-C-TT---T-ATCCC-AG-T-T-GCTATCA-CT-TATGGT-G--ATA----TTTTT--TTC-AT
gi|57770                      : TTAT--CA-CA-TGTTT-AC----CC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-GAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57771                      : TTGT--CA-CA-TATTT-AC----CC-C-TT---T-AT-CG-AG-T-T-CATATCA-CT-CGT-GT-A--ATAT---TTTTT--TTC-ATAT
gi|57772                      : TTAT--CA-CA-TATTT-ACTTACCC-C-TT---T-AT-CC-AG-T-T-GATAACA-CT-CAT-AT-G--ATA----AATTT--TTC-ATAT
gi|57773                      : TTATTCCA-CA-TATTT-AC----CC-C-CTAATT-AT-CC-AG-T-T-GATATCA-CT-TGT-GT-G--ATAGATTTTTTT--TTC-AAAT
gi|57774                      : TTAT---A-CA-TATTT-AC----CC-T-TG---T-AT-CC-AG-TAT-ATTATCA-CT-TAT-GT-G--ATA----TTTTTCGTTCAATAT
gi|57775                      : TTAT--CA-CA-TATTT-AC----CC----T---T-A--CC-A--T-T-GATATCG-CC-T-T-GTTG--ATA----TTTTT--TTC-ATAT
gi|57776                      : TCAT--CA-TA-TATTT-AC----TC-C-TC---T-AT-AC--G-T-T-GATATCA-CT-CAT-AT-G--ATA----ATTTG--TTC-ACAT
gi|57777                      : TTAT--CA-CA--ATT--AC----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-GT-CAT-G
gi|57778                      :  TAT--TA-CA-T-TTT-AC----CC-C-TT---T-AT-CC-AG-T-TGGATATCA-C--TGT-GT-G--ATA-----TTTT--TTC-ATAT
gi|57779                      :  TAT--CA-CA--ATTT-AC----CCTC-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT-GT-G---TA-----TTTT--TTC-ATAT
gi|57780                      :                  -AC----CC-C-TT---T-AT-CC-AA-T-T-GATATCA-CT-CAT-GT-G--ATA----T
gi|57781                      :                     ----CC-C-TT---T-AT-CC-AG-T-T-GATATCA-CT-TAT--T-G--ATA----TTTTT--TTC-ATAT